Wall clock time and date at job start Tue Mar 31 2020 07:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99537 * 2 1 4 4 C 1.53005 * 109.46701 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47310 * 65.00087 * 4 3 2 6 6 C 1.35425 * 117.00238 * 179.97438 * 5 4 3 7 7 N 1.32237 * 119.79796 * 359.97438 * 6 5 4 8 8 C 1.31878 * 121.80101 * 180.02562 * 7 6 5 9 9 C 1.38359 * 121.18342 * 0.02562 * 8 7 6 10 10 C 1.38337 * 119.46115 * 359.70199 * 9 8 7 11 11 C 1.39992 * 118.34301 * 0.56392 * 10 9 8 12 12 C 1.47526 * 120.59559 * 179.71542 * 11 10 9 13 13 O 1.21589 * 120.00330 * 179.72385 * 12 11 10 14 14 N 1.34779 * 119.99854 * 359.71729 * 12 11 10 15 15 C 1.46496 * 119.99965 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.47464 * 325.00834 * 15 14 12 17 17 C 1.53006 * 109.46995 * 85.00573 * 15 14 12 18 18 C 1.50699 * 109.47248 * 205.00258 * 15 14 12 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99908 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00364 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99946 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47324 * 59.99539 * 22 20 18 24 24 H 1.48494 * 109.47376 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46921 * 299.99915 * 22 20 18 26 26 H 1.08999 * 109.47104 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47112 * 299.99644 * 1 2 3 28 28 H 1.09000 * 109.47394 * 59.99479 * 1 2 3 29 29 H 1.08993 * 109.47447 * 60.00929 * 3 2 1 30 30 H 1.09000 * 109.47439 * 299.99892 * 3 2 1 31 31 H 1.09005 * 109.47062 * 305.00437 * 4 3 2 32 32 H 1.08998 * 109.47215 * 185.00362 * 4 3 2 33 33 H 1.08001 * 119.40968 * 179.97438 * 8 7 6 34 34 H 1.08001 * 120.26937 * 179.97438 * 9 8 7 35 35 H 1.07993 * 120.82866 * 180.27906 * 10 9 8 36 36 H 0.97003 * 120.00044 * 0.02562 * 14 12 11 37 37 H 1.09001 * 109.47002 * 299.99701 * 17 15 14 38 38 H 1.08993 * 109.46955 * 60.00138 * 17 15 14 39 39 H 1.09000 * 109.47050 * 179.97438 * 17 15 14 40 40 H 0.96999 * 120.00396 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5798 -1.2220 6 6 5.2973 0.3995 -1.3836 7 7 6.1322 0.7799 -0.4313 8 6 7.4365 0.6238 -0.5474 9 6 7.9917 0.0518 -1.6783 10 6 7.1643 -0.3697 -2.7037 11 6 5.7835 -0.1884 -2.5607 12 6 4.8561 -0.6138 -3.6262 13 8 3.6584 -0.4558 -3.4885 14 7 5.3364 -1.1776 -4.7522 15 6 4.4154 -1.5996 -5.8105 16 1 3.4931 -1.9702 -5.3631 17 6 4.0996 -0.4080 -6.7168 18 6 5.0541 -2.6948 -6.6251 19 1 6.0467 -3.0421 -6.3788 20 6 4.3714 -3.2534 -7.6847 21 7 3.1626 -2.8309 -7.9843 22 14 5.1629 -4.6115 -8.6940 23 1 5.4684 -5.7682 -7.8142 24 1 4.2294 -5.0392 -9.7668 25 1 6.4199 -4.1072 -9.3030 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6887 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1766 0.0890 33 1 8.0830 0.9489 0.2543 34 1 9.0620 -0.0686 -1.7580 35 1 7.5736 -0.8231 -3.5943 36 1 6.2918 -1.3040 -4.8620 37 1 3.6376 0.3842 -6.1276 38 1 5.0218 -0.0374 -7.1642 39 1 3.4148 -0.7220 -7.5045 40 1 2.6821 -3.2241 -8.7295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338063663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:12 Heat of formation + Delta-G solvation = -106.074006 kcal Electronic energy + Delta-G solvation = -23583.217386 eV Core-core repulsion = 19976.891227 eV Total energy + Delta-G solvation = -3606.326159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87114 -40.10778 -39.33687 -38.32404 -36.67196 -34.53374 -33.53316 -32.37088 -31.10336 -30.25588 -27.34843 -27.28917 -25.73114 -24.76366 -23.20422 -22.94774 -21.26454 -19.81149 -19.16243 -18.02647 -17.88842 -17.69643 -17.00953 -16.71649 -16.55691 -16.22873 -15.96246 -15.73654 -15.62678 -15.13293 -14.51693 -14.45735 -14.24738 -14.01408 -13.67523 -13.39611 -13.28286 -12.98622 -12.86219 -12.72981 -12.55177 -12.40130 -12.26569 -12.14203 -11.90732 -11.13445 -11.05891 -10.97940 -10.71833 -10.60333 -10.48180 -9.80941 -9.44793 -8.16269 -6.34604 -0.26406 0.27031 1.45814 1.48832 1.56480 2.00787 2.03570 2.33462 2.56092 2.78584 2.88498 3.14005 3.31436 3.79628 3.85931 3.95297 4.02459 4.12231 4.24020 4.34469 4.44883 4.47961 4.51011 4.54965 4.70367 4.75613 4.80411 4.90365 4.95137 5.08594 5.13914 5.42657 5.47115 5.60549 5.67937 5.90949 6.09025 6.15212 6.30781 6.71783 6.74944 6.97285 7.32592 7.55442 8.90278 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.004332 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.949383 B = 6462.629657 C = 8022.841981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.060 3.940 4 C 0.064 3.936 5 O -0.296 6.296 6 C 0.348 3.652 7 N -0.556 5.556 8 C 0.163 3.837 9 C -0.203 4.203 10 C -0.008 4.008 11 C -0.234 4.234 12 C 0.542 3.458 13 O -0.579 6.579 14 N -0.700 5.700 15 C 0.273 3.727 16 H -0.006 1.006 17 C -0.132 4.132 18 C -0.548 4.548 19 H 0.076 0.924 20 C 0.014 3.986 21 N -0.919 5.919 22 Si 0.976 3.024 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.261 1.261 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.209 0.791 34 H 0.189 0.811 35 H 0.164 0.836 36 H 0.403 0.597 37 H 0.007 0.993 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 8.904 16.836 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.016 4.016 4 C -0.011 4.011 5 O -0.201 6.201 6 C 0.169 3.831 7 N -0.281 5.281 8 C 0.006 3.994 9 C -0.222 4.222 10 C -0.034 4.034 11 C -0.240 4.240 12 C 0.329 3.671 13 O -0.460 6.460 14 N -0.350 5.350 15 C 0.169 3.831 16 H 0.012 0.988 17 C -0.190 4.190 18 C -0.586 4.586 19 H 0.094 0.906 20 C -0.186 4.186 21 N -0.557 5.557 22 Si 0.800 3.200 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.185 1.185 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.226 0.774 34 H 0.206 0.794 35 H 0.181 0.819 36 H 0.239 0.761 37 H 0.026 0.974 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.392 9.129 17.349 20.951 hybrid contribution 0.130 -0.818 -1.416 1.641 sum 7.522 8.310 15.932 19.481 Atomic orbital electron populations 1.22894 0.79450 1.03556 1.00942 1.87945 1.21674 1.28702 1.95609 1.22779 0.91127 0.85242 1.02418 1.22952 0.93804 0.99265 0.85051 1.86598 1.17826 1.75187 1.40503 1.20031 0.84635 0.89237 0.89196 1.67549 1.06890 1.24262 1.29391 1.23508 0.88755 0.89591 0.97526 1.22388 1.03287 1.02635 0.93890 1.22031 0.89443 0.91905 1.00036 1.20173 0.95869 1.12014 0.95950 1.18475 0.87932 0.78072 0.82570 1.90763 1.17605 1.57068 1.80539 1.46121 1.11209 1.60381 1.17324 1.18343 0.88540 0.92406 0.83763 0.98810 1.21886 1.00372 0.96554 1.00227 1.21503 1.03234 1.19561 1.14270 0.90573 1.25847 0.95208 0.99378 0.98209 1.70060 1.12951 1.43219 1.29474 0.85342 0.78330 0.78590 0.77723 1.19604 1.21230 1.18520 0.89439 0.91287 0.94310 0.87253 0.93194 0.90815 0.88272 0.77435 0.79403 0.81873 0.76108 0.97384 0.93842 0.91347 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.42 -13.57 10.67 -144.35 -1.54 -15.11 16 3 C 0.06 1.56 6.32 71.98 0.45 2.01 16 4 C 0.06 1.80 5.69 71.98 0.41 2.21 16 5 O -0.30 -11.60 8.18 -62.58 -0.51 -12.11 16 6 C 0.35 12.21 7.51 85.13 0.64 12.85 16 7 N -0.56 -14.82 9.21 -308.00 -2.84 -17.66 16 8 C 0.16 2.84 11.17 84.71 0.95 3.79 16 9 C -0.20 -3.26 10.09 22.32 0.23 -3.04 16 10 C -0.01 -0.20 9.64 22.72 0.22 0.02 16 11 C -0.23 -8.35 5.90 -19.91 -0.12 -8.47 16 12 C 0.54 25.14 7.74 86.69 0.67 25.81 16 13 O -0.58 -32.56 14.85 16.82 0.25 -32.31 16 14 N -0.70 -31.50 5.02 -449.28 -2.26 -33.75 16 15 C 0.27 14.94 2.56 44.25 0.11 15.06 16 16 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 17 C -0.13 -7.01 9.26 71.98 0.67 -6.35 16 18 C -0.55 -29.69 8.73 25.60 0.22 -29.47 16 19 H 0.08 3.79 7.74 -2.91 -0.02 3.76 16 20 C 0.01 0.74 5.30 84.66 0.45 1.19 16 21 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 22 Si 0.98 42.36 29.54 68.60 2.03 44.39 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.99 8.11 -2.38 -0.02 1.97 16 32 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 33 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.16 3.21 6.51 -2.91 -0.02 3.19 16 36 H 0.40 14.75 6.64 -92.71 -0.62 14.13 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 40 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -81.81 343.19 1.96 -79.84 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.44 Total: 22.91 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.15 Total: 17.52 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.85 Total: -105.14 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -1.80 Total: -59.53 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -81.81 1.96 -79.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338063663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.229 kcal (2) G-P(sol) polarization free energy of solvation -81.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds