Wall clock time and date at job start Tue Mar 31 2020 07:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00483 * 2 1 4 4 C 1.52996 * 109.47314 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47182 * 64.99946 * 4 3 2 6 6 C 1.35428 * 117.00218 * 180.02562 * 5 4 3 7 7 N 1.32237 * 119.79461 * 359.97438 * 6 5 4 8 8 C 1.31886 * 121.79876 * 179.97438 * 7 6 5 9 9 C 1.38359 * 121.18215 * 0.02562 * 8 7 6 10 10 C 1.38339 * 119.46276 * 359.70003 * 9 8 7 11 11 C 1.39993 * 118.34268 * 0.56380 * 10 9 8 12 12 C 1.47528 * 120.59516 * 179.71414 * 11 10 9 13 13 O 1.21587 * 119.99964 * 179.71867 * 12 11 10 14 14 N 1.34780 * 119.99667 * 359.72199 * 12 11 10 15 15 C 1.46495 * 119.99388 * 180.02562 * 14 12 11 16 16 H 1.08993 * 109.47981 * 34.99768 * 15 14 12 17 17 C 1.53002 * 109.46950 * 274.99377 * 15 14 12 18 18 C 1.50707 * 109.46964 * 155.00106 * 15 14 12 19 19 H 1.07997 * 120.00412 * 34.99750 * 18 15 14 20 20 C 1.37878 * 119.99902 * 215.00059 * 18 15 14 21 21 N 1.31508 * 120.00170 * 184.90962 * 20 18 15 22 22 Si 1.86807 * 119.99876 * 4.91088 * 20 18 15 23 23 H 1.48503 * 109.47044 * 84.83582 * 22 20 18 24 24 H 1.48503 * 109.47110 * 204.83208 * 22 20 18 25 25 H 1.48499 * 109.47347 * 324.83521 * 22 20 18 26 26 H 1.08997 * 109.47772 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47126 * 300.00495 * 1 2 3 28 28 H 1.09004 * 109.46745 * 59.99738 * 1 2 3 29 29 H 1.09003 * 109.47220 * 59.99761 * 3 2 1 30 30 H 1.09008 * 109.46920 * 299.99977 * 3 2 1 31 31 H 1.09001 * 109.47235 * 304.99986 * 4 3 2 32 32 H 1.09000 * 109.47340 * 185.00058 * 4 3 2 33 33 H 1.07995 * 119.40832 * 180.02562 * 8 7 6 34 34 H 1.08003 * 120.26584 * 179.97438 * 9 8 7 35 35 H 1.07992 * 120.82968 * 180.27575 * 10 9 8 36 36 H 0.97000 * 120.00441 * 359.97438 * 14 12 11 37 37 H 1.09006 * 109.47034 * 175.03948 * 17 15 14 38 38 H 1.08993 * 109.47019 * 55.04390 * 17 15 14 39 39 H 1.09001 * 109.47478 * 295.03781 * 17 15 14 40 40 H 0.96999 * 120.00090 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.2972 0.3981 -1.3832 7 7 6.1320 0.7777 -0.4304 8 6 7.4363 0.6195 -0.5457 9 6 7.9913 0.0464 -1.6761 10 6 7.1639 -0.3743 -2.7018 11 6 5.7834 -0.1909 -2.5598 12 6 4.8559 -0.6154 -3.6257 13 8 3.6584 -0.4556 -3.4887 14 7 5.3361 -1.1803 -4.7512 15 6 4.4152 -1.6012 -5.8098 16 1 3.5778 -0.9055 -5.8609 17 6 3.8930 -3.0062 -5.5026 18 6 5.1401 -1.6127 -7.1311 19 1 6.1812 -1.8967 -7.1734 20 6 4.4742 -1.2605 -8.2858 21 7 5.0773 -1.3628 -9.4500 22 14 2.7152 -0.6380 -8.1968 23 1 2.7199 0.8210 -7.9197 24 1 2.0334 -0.8938 -9.4910 25 1 1.9939 -1.3461 -7.1088 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8463 -0.8901 31 1 3.8515 0.5680 0.8409 32 1 3.9786 2.1763 0.0889 33 1 8.0826 0.9432 0.2567 34 1 9.0615 -0.0756 -1.7550 35 1 7.5732 -0.8285 -3.5920 36 1 6.2915 -1.3074 -4.8606 37 1 3.1418 -3.2843 -6.2419 38 1 3.4462 -3.0183 -4.5085 39 1 4.7187 -3.7167 -5.5386 40 1 4.6087 -1.1154 -10.2624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338063664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:16 Heat of formation + Delta-G solvation = -80.448296 kcal Electronic energy + Delta-G solvation = -23702.268701 eV Core-core repulsion = 20097.053757 eV Total energy + Delta-G solvation = -3605.214945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.74607 -38.64942 -38.22843 -37.28325 -34.78914 -32.91839 -32.09234 -31.38208 -30.03495 -29.14218 -26.39838 -25.29326 -24.58192 -23.64969 -22.19789 -21.12904 -19.57928 -18.61392 -17.77397 -16.96642 -16.86352 -16.30685 -15.78970 -15.52726 -15.24261 -15.12276 -14.69377 -14.38536 -14.02407 -13.63261 -13.42163 -13.17279 -12.86830 -12.49777 -12.47216 -12.38043 -12.27550 -11.62687 -11.43608 -11.41517 -11.07206 -10.93078 -10.77843 -10.53305 -9.93775 -9.90482 -9.84714 -9.74065 -9.16675 -9.04823 -8.67701 -8.48079 -7.98655 -6.21848 -4.25254 0.80640 1.26072 3.01961 3.28345 3.34179 3.36215 3.44835 3.67497 3.89994 4.10843 4.30103 4.35153 4.75379 4.85354 4.90042 4.98993 5.09191 5.11825 5.20237 5.25152 5.31066 5.32310 5.41283 5.62446 5.63142 5.65409 5.88296 6.07347 6.32332 6.40674 6.59270 6.73291 6.99354 7.05225 7.23245 7.32849 7.42472 7.59950 7.75572 8.17421 8.60588 8.78829 9.05207 9.40846 10.89850 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.005040 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.288304 B = 5554.130694 C = 7226.286199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.063 3.937 4 C 0.068 3.932 5 O -0.257 6.257 6 C 0.368 3.632 7 N -0.551 5.551 8 C 0.155 3.845 9 C -0.222 4.222 10 C -0.010 4.010 11 C -0.196 4.196 12 C 0.546 3.454 13 O -0.529 6.529 14 N -0.701 5.701 15 C 0.233 3.767 16 H 0.050 0.950 17 C -0.147 4.147 18 C -0.529 4.529 19 H 0.079 0.921 20 C 0.082 3.918 21 N -0.890 5.890 22 Si 0.873 3.127 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.259 1.259 26 H 0.086 0.914 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.389 0.611 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.046 0.954 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 5.087 19.800 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.014 4.014 4 C -0.008 4.008 5 O -0.161 6.161 6 C 0.188 3.812 7 N -0.276 5.276 8 C -0.002 4.002 9 C -0.242 4.242 10 C -0.036 4.036 11 C -0.203 4.203 12 C 0.331 3.669 13 O -0.407 6.407 14 N -0.351 5.351 15 C 0.131 3.869 16 H 0.068 0.932 17 C -0.206 4.206 18 C -0.567 4.567 19 H 0.097 0.903 20 C -0.122 4.122 21 N -0.526 5.526 22 Si 0.700 3.300 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.184 1.184 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.223 0.777 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.301 5.360 20.220 20.920 hybrid contribution -0.071 0.261 -0.702 0.752 sum -0.371 5.620 19.518 20.314 Atomic orbital electron populations 1.22732 0.81043 1.02910 0.99708 1.87995 1.19653 1.26918 1.95332 1.22585 0.91748 0.85946 1.01134 1.22701 0.93016 0.98668 0.86430 1.86630 1.16527 1.74473 1.38438 1.19860 0.84497 0.88347 0.88522 1.67439 1.05592 1.24076 1.30456 1.22547 0.89582 0.91772 0.96305 1.21895 1.01478 1.05188 0.95672 1.21753 0.91163 0.92378 0.98350 1.20402 0.94781 1.08598 0.96489 1.17863 0.87811 0.79068 0.82163 1.90794 1.15048 1.55595 1.79264 1.46539 1.11013 1.60339 1.17223 1.19122 0.90142 0.92213 0.85455 0.93169 1.22213 1.00139 0.99295 0.98984 1.21011 0.99469 1.47219 0.89049 0.90334 1.24924 0.98060 0.94123 0.95137 1.69878 1.37825 1.46972 0.97925 0.86908 0.85173 0.80310 0.77635 1.19867 1.21210 1.18371 0.89580 0.94413 0.93834 0.91371 0.91985 0.90842 0.90191 0.82231 0.84100 0.83496 0.77654 0.92933 0.95074 0.93455 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.62 10.67 -40.08 -0.43 -6.05 16 3 C 0.06 0.76 6.32 37.16 0.23 1.00 16 4 C 0.07 0.90 5.69 37.16 0.21 1.11 16 5 O -0.26 -4.64 8.18 -43.73 -0.36 -5.00 16 6 C 0.37 6.23 7.51 -16.61 -0.12 6.10 16 7 N -0.55 -7.72 9.21 -12.98 -0.12 -7.84 16 8 C 0.15 1.66 11.17 -17.48 -0.20 1.47 16 9 C -0.22 -2.29 10.09 -39.50 -0.40 -2.69 16 10 C -0.01 -0.14 9.64 -38.89 -0.37 -0.51 16 11 C -0.20 -3.39 5.90 -104.69 -0.62 -4.01 16 12 C 0.55 11.59 7.74 -12.47 -0.10 11.50 16 13 O -0.53 -13.15 14.85 -16.48 -0.24 -13.39 16 14 N -0.70 -14.76 5.02 -55.98 -0.28 -15.04 16 15 C 0.23 5.70 2.22 -69.08 -0.15 5.55 16 16 H 0.05 1.35 4.73 -51.93 -0.25 1.10 16 17 C -0.15 -3.34 9.47 37.16 0.35 -2.99 16 18 C -0.53 -14.33 9.05 -34.44 -0.31 -14.65 16 19 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 20 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 21 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 22 Si 0.87 21.90 26.99 -169.99 -4.59 17.31 16 23 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.26 -6.45 6.82 56.52 0.39 -6.06 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 35 H 0.15 1.64 6.51 -52.49 -0.34 1.30 16 36 H 0.39 7.05 6.69 -40.82 -0.27 6.77 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -35.07 342.94 -6.04 -41.11 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.50 Total: 3.66 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -0.46 Total: 5.55 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.37 Total: -48.36 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -1.03 Total: -24.44 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.59 Total: 17.31 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.07 -6.04 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338063664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.339 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds