Wall clock time and date at job start Tue Mar 31 2020 07:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00483 * 2 1 4 4 C 1.52996 * 109.47314 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47182 * 64.99946 * 4 3 2 6 6 C 1.35428 * 117.00218 * 180.02562 * 5 4 3 7 7 N 1.32237 * 119.79461 * 359.97438 * 6 5 4 8 8 C 1.31886 * 121.79876 * 179.97438 * 7 6 5 9 9 C 1.38359 * 121.18215 * 0.02562 * 8 7 6 10 10 C 1.38339 * 119.46276 * 359.70003 * 9 8 7 11 11 C 1.39993 * 118.34268 * 0.56380 * 10 9 8 12 12 C 1.47528 * 120.59516 * 179.71414 * 11 10 9 13 13 O 1.21587 * 119.99964 * 179.71867 * 12 11 10 14 14 N 1.34780 * 119.99667 * 359.72199 * 12 11 10 15 15 C 1.46495 * 119.99388 * 180.02562 * 14 12 11 16 16 H 1.08993 * 109.47981 * 34.99768 * 15 14 12 17 17 C 1.53002 * 109.46950 * 274.99377 * 15 14 12 18 18 C 1.50707 * 109.46964 * 155.00106 * 15 14 12 19 19 H 1.07997 * 120.00412 * 34.99750 * 18 15 14 20 20 C 1.37878 * 119.99902 * 215.00059 * 18 15 14 21 21 N 1.31508 * 120.00170 * 184.90962 * 20 18 15 22 22 Si 1.86807 * 119.99876 * 4.91088 * 20 18 15 23 23 H 1.48503 * 109.47044 * 84.83582 * 22 20 18 24 24 H 1.48503 * 109.47110 * 204.83208 * 22 20 18 25 25 H 1.48499 * 109.47347 * 324.83521 * 22 20 18 26 26 H 1.08997 * 109.47772 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47126 * 300.00495 * 1 2 3 28 28 H 1.09004 * 109.46745 * 59.99738 * 1 2 3 29 29 H 1.09003 * 109.47220 * 59.99761 * 3 2 1 30 30 H 1.09008 * 109.46920 * 299.99977 * 3 2 1 31 31 H 1.09001 * 109.47235 * 304.99986 * 4 3 2 32 32 H 1.09000 * 109.47340 * 185.00058 * 4 3 2 33 33 H 1.07995 * 119.40832 * 180.02562 * 8 7 6 34 34 H 1.08003 * 120.26584 * 179.97438 * 9 8 7 35 35 H 1.07992 * 120.82968 * 180.27575 * 10 9 8 36 36 H 0.97000 * 120.00441 * 359.97438 * 14 12 11 37 37 H 1.09006 * 109.47034 * 175.03948 * 17 15 14 38 38 H 1.08993 * 109.47019 * 55.04390 * 17 15 14 39 39 H 1.09001 * 109.47478 * 295.03781 * 17 15 14 40 40 H 0.96999 * 120.00090 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.2972 0.3981 -1.3832 7 7 6.1320 0.7777 -0.4304 8 6 7.4363 0.6195 -0.5457 9 6 7.9913 0.0464 -1.6761 10 6 7.1639 -0.3743 -2.7018 11 6 5.7834 -0.1909 -2.5598 12 6 4.8559 -0.6154 -3.6257 13 8 3.6584 -0.4556 -3.4887 14 7 5.3361 -1.1803 -4.7512 15 6 4.4152 -1.6012 -5.8098 16 1 3.5778 -0.9055 -5.8609 17 6 3.8930 -3.0062 -5.5026 18 6 5.1401 -1.6127 -7.1311 19 1 6.1812 -1.8967 -7.1734 20 6 4.4742 -1.2605 -8.2858 21 7 5.0773 -1.3628 -9.4500 22 14 2.7152 -0.6380 -8.1968 23 1 2.7199 0.8210 -7.9197 24 1 2.0334 -0.8938 -9.4910 25 1 1.9939 -1.3461 -7.1088 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8463 -0.8901 31 1 3.8515 0.5680 0.8409 32 1 3.9786 2.1763 0.0889 33 1 8.0826 0.9432 0.2567 34 1 9.0615 -0.0756 -1.7550 35 1 7.5732 -0.8285 -3.5920 36 1 6.2915 -1.3074 -4.8606 37 1 3.1418 -3.2843 -6.2419 38 1 3.4462 -3.0183 -4.5085 39 1 4.7187 -3.7167 -5.5386 40 1 4.6087 -1.1154 -10.2624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338063664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:15 Heat of formation + Delta-G solvation = -107.361032 kcal Electronic energy + Delta-G solvation = -23703.435725 eV Core-core repulsion = 20097.053757 eV Total energy + Delta-G solvation = -3606.381968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88718 -40.16517 -39.34758 -38.32698 -36.67807 -34.53564 -33.72082 -32.38662 -31.48468 -30.47237 -27.34713 -27.29036 -25.74778 -24.76302 -23.21021 -22.77090 -21.33029 -19.85360 -19.37450 -18.15915 -17.97161 -17.90142 -17.01635 -16.76009 -16.52551 -16.22392 -15.96729 -15.74671 -15.61404 -15.23433 -14.60331 -14.48557 -14.33363 -14.18646 -14.06211 -13.40832 -13.29041 -13.26652 -13.05474 -12.80997 -12.55816 -12.45318 -12.40806 -11.91143 -11.89078 -11.25948 -11.07923 -10.98915 -10.86426 -10.72127 -10.51746 -9.86824 -9.46639 -8.40274 -6.45736 -0.28016 0.26333 1.27102 1.31628 1.43361 1.99158 1.99967 2.25863 2.36565 2.77738 2.86723 3.01644 3.30648 3.79007 3.83605 3.94769 4.01517 4.11533 4.22547 4.34576 4.41385 4.46035 4.48219 4.50839 4.57321 4.69902 4.72249 4.80110 4.81562 4.93383 5.08455 5.14146 5.34590 5.44092 5.46325 5.72815 6.11374 6.14751 6.29305 6.58185 6.73044 6.90483 7.20401 7.45488 8.74500 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.005040 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.288304 B = 5554.130694 C = 7226.286199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.061 3.939 4 C 0.064 3.936 5 O -0.294 6.294 6 C 0.349 3.651 7 N -0.556 5.556 8 C 0.164 3.836 9 C -0.204 4.204 10 C -0.009 4.009 11 C -0.235 4.235 12 C 0.545 3.455 13 O -0.575 6.575 14 N -0.699 5.699 15 C 0.236 3.764 16 H 0.027 0.973 17 C -0.140 4.140 18 C -0.524 4.524 19 H 0.062 0.938 20 C 0.038 3.962 21 N -0.926 5.926 22 Si 0.921 3.079 23 H -0.277 1.277 24 H -0.274 1.274 25 H -0.260 1.260 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.208 0.792 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.404 0.596 37 H 0.049 0.951 38 H 0.031 0.969 39 H 0.060 0.940 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 5.723 22.047 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C -0.015 4.015 4 C -0.011 4.011 5 O -0.199 6.199 6 C 0.170 3.830 7 N -0.281 5.281 8 C 0.007 3.993 9 C -0.223 4.223 10 C -0.034 4.034 11 C -0.241 4.241 12 C 0.333 3.667 13 O -0.457 6.457 14 N -0.350 5.350 15 C 0.132 3.868 16 H 0.044 0.956 17 C -0.199 4.199 18 C -0.562 4.562 19 H 0.080 0.920 20 C -0.163 4.163 21 N -0.565 5.565 22 Si 0.747 3.253 23 H -0.203 1.203 24 H -0.199 1.199 25 H -0.184 1.184 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.225 0.775 34 H 0.204 0.796 35 H 0.180 0.820 36 H 0.240 0.760 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.294 5.994 22.478 23.300 hybrid contribution -0.396 0.089 -1.257 1.321 sum 0.898 6.083 21.222 22.095 Atomic orbital electron populations 1.22896 0.79452 1.03612 1.00896 1.87936 1.21639 1.28589 1.95605 1.22764 0.91080 0.85287 1.02392 1.22942 0.93801 0.99238 0.85087 1.86582 1.17707 1.75171 1.40482 1.20014 0.84665 0.89137 0.89144 1.67554 1.06852 1.24246 1.29475 1.23489 0.88795 0.89490 0.97481 1.22382 1.03271 1.02703 0.93978 1.22031 0.89626 0.91934 0.99841 1.20155 0.95800 1.12144 0.95995 1.18430 0.87950 0.77809 0.82534 1.90753 1.17278 1.57370 1.80251 1.46239 1.11310 1.60648 1.16769 1.18885 0.89748 0.92698 0.85450 0.95552 1.22103 1.00488 0.98423 0.98857 1.21158 0.98817 1.46109 0.90165 0.91969 1.25515 1.01102 0.94629 0.95015 1.69955 1.39335 1.48627 0.98564 0.86140 0.81811 0.79439 0.77951 1.20257 1.19890 1.18438 0.89256 0.91489 0.94291 0.87398 0.93177 0.90732 0.88468 0.77506 0.79607 0.82046 0.76010 0.93246 0.94971 0.92064 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -12.52 10.67 -144.34 -1.54 -14.06 16 3 C 0.06 1.47 6.32 71.98 0.45 1.92 16 4 C 0.06 1.70 5.69 71.98 0.41 2.11 16 5 O -0.29 -10.92 8.18 -62.61 -0.51 -11.43 16 6 C 0.35 11.74 7.51 85.13 0.64 12.38 16 7 N -0.56 -14.34 9.21 -308.00 -2.84 -17.18 16 8 C 0.16 2.80 11.17 84.71 0.95 3.74 16 9 C -0.20 -3.27 10.09 22.32 0.23 -3.05 16 10 C -0.01 -0.20 9.64 22.72 0.22 0.02 16 11 C -0.23 -8.03 5.90 -19.91 -0.12 -8.15 16 12 C 0.55 23.67 7.74 86.69 0.67 24.34 16 13 O -0.58 -29.80 14.85 16.83 0.25 -29.55 16 14 N -0.70 -29.70 5.02 -449.28 -2.26 -31.96 16 15 C 0.24 11.69 2.22 44.25 0.10 11.79 16 16 H 0.03 1.45 4.73 -2.39 -0.01 1.44 16 17 C -0.14 -6.36 9.47 71.98 0.68 -5.68 16 18 C -0.52 -28.70 9.05 25.60 0.23 -28.47 16 19 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 20 C 0.04 2.17 5.47 84.66 0.46 2.64 16 21 N -0.93 -55.24 13.96 21.45 0.30 -54.94 16 22 Si 0.92 45.73 26.99 68.60 1.85 47.58 16 23 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 25 H -0.26 -12.83 6.82 99.48 0.68 -12.15 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 32 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 33 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.16 3.22 6.51 -2.91 -0.02 3.20 16 36 H 0.40 14.51 6.69 -92.71 -0.62 13.89 16 37 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -79.39 342.94 1.83 -77.56 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.41 Total: 18.53 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.17 Total: 15.44 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.79 Total: -104.07 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -1.80 Total: -55.04 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.85 Total: 47.58 kcal Total: -79.39 1.83 -77.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338063664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.802 kcal (2) G-P(sol) polarization free energy of solvation -79.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds