Wall clock time and date at job start Tue Mar 31 2020 08:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46511 * 109.47125 * 2 1 4 4 C 1.46499 * 119.99562 * 267.72239 * 3 2 1 5 5 C 1.50700 * 109.46799 * 263.57168 * 4 3 2 6 6 H 1.07995 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99566 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00280 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99733 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46901 * 90.00605 * 9 7 5 11 11 H 1.48503 * 109.47120 * 210.00226 * 9 7 5 12 12 H 1.48495 * 109.47350 * 330.00607 * 9 7 5 13 13 C 1.34770 * 120.00084 * 87.71695 * 3 2 1 14 14 O 1.21614 * 119.99874 * 4.29677 * 13 3 2 15 15 C 1.47417 * 120.00199 * 184.29335 * 13 3 2 16 16 N 1.36067 * 126.44824 * 354.35508 * 15 13 3 17 17 C 1.29934 * 108.47979 * 180.02562 * 16 15 13 18 18 O 1.34055 * 109.23880 * 0.02562 * 17 16 15 19 19 C 1.34251 * 108.23116 * 359.97438 * 18 17 16 20 20 C 1.50696 * 126.52809 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.82601 * 195.67950 * 20 19 18 22 22 C 1.54387 * 109.82693 * 74.79536 * 20 19 18 23 23 C 1.55452 * 102.18608 * 219.18276 * 22 20 19 24 24 C 1.54945 * 100.98935 * 34.04054 * 23 22 20 25 25 O 1.43238 * 109.83158 * 316.57345 * 20 19 18 26 26 H 1.09000 * 109.47446 * 299.99786 * 1 2 3 27 27 H 1.09001 * 109.47381 * 59.99951 * 1 2 3 28 28 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47446 * 240.00214 * 2 1 3 30 30 H 1.08996 * 109.47554 * 119.99622 * 2 1 3 31 31 H 1.08996 * 109.47689 * 23.58132 * 4 3 2 32 32 H 1.09004 * 109.46923 * 143.58089 * 4 3 2 33 33 H 0.97001 * 120.00320 * 179.97438 * 8 7 5 34 34 H 1.07993 * 125.38270 * 179.97438 * 17 16 15 35 35 H 1.09000 * 110.84764 * 337.32250 * 22 20 19 36 36 H 1.09006 * 110.84600 * 100.94372 * 22 20 19 37 37 H 1.09001 * 111.05667 * 276.12492 * 23 22 20 38 38 H 1.08995 * 111.18130 * 152.01034 * 23 22 20 39 39 H 1.09001 * 110.31000 * 204.69350 * 24 23 22 40 40 H 1.08997 * 110.31114 * 82.51801 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3100 2.0550 -1.2678 5 6 3.7830 1.9467 -1.5668 6 1 4.4364 1.4275 -0.8814 7 6 4.2964 2.5104 -2.7156 8 7 3.5009 3.1429 -3.5501 9 14 6.1222 2.3755 -3.0867 10 1 6.3774 1.1428 -3.8747 11 1 6.5575 3.5611 -3.8678 12 1 6.8832 2.3151 -1.8130 13 6 2.1991 2.0321 1.1662 14 8 2.0321 1.4489 2.2202 15 6 2.5993 3.4509 1.1642 16 7 2.9245 4.1976 0.0742 17 6 3.2219 5.3985 0.4714 18 8 3.1015 5.4652 1.8048 19 6 2.7141 4.2602 2.2524 20 6 2.4554 3.8767 3.6866 21 1 2.4283 2.7911 3.7799 22 6 1.1119 4.4763 4.1547 23 6 1.4368 4.9122 5.6110 24 6 2.9203 5.3360 5.4685 25 8 3.4857 4.4111 4.5260 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.7408 1.5838 -2.0691 32 1 2.0308 3.1061 -1.1933 33 1 3.8621 3.5398 -4.3581 34 1 3.5199 6.2138 -0.1711 35 1 0.8375 5.3368 3.5445 36 1 0.3247 3.7223 4.1405 37 1 1.3317 4.0764 6.3027 38 1 0.8156 5.7536 5.9181 39 1 3.4303 5.2569 6.4286 40 1 2.9878 6.3544 5.0861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343792780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:29 Heat of formation + Delta-G solvation = -44.129186 kcal Electronic energy + Delta-G solvation = -24739.806937 eV Core-core repulsion = 21136.166907 eV Total energy + Delta-G solvation = -3603.640030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.88278 -39.32513 -38.89483 -35.24542 -34.22315 -32.55916 -32.29242 -31.31479 -30.38756 -27.91862 -26.81797 -24.29190 -23.10447 -22.86754 -22.02219 -21.78316 -20.61386 -18.91693 -17.04171 -16.74622 -16.45355 -16.24530 -16.01787 -15.67776 -15.36872 -14.79803 -14.28982 -14.15238 -13.72588 -13.62948 -13.21029 -13.09650 -12.71795 -12.34117 -11.95337 -11.89438 -11.81889 -11.59542 -11.44988 -11.33668 -11.01448 -10.86381 -10.81420 -10.58749 -10.45654 -10.08736 -9.86810 -9.62641 -9.35051 -9.17185 -8.46763 -8.28220 -7.61753 -5.95409 -3.96095 1.54538 2.78138 3.02563 3.32557 3.39013 3.44467 3.75221 3.89664 4.07744 4.38434 4.49393 4.55241 4.73154 4.78086 5.08896 5.14860 5.34640 5.40291 5.49343 5.55405 5.58746 5.64147 5.71917 5.80402 5.81259 5.89116 5.95551 6.04559 6.25434 6.34765 6.37755 6.61126 6.66338 6.89603 6.91974 7.55583 7.80138 7.96006 8.14757 8.33472 8.38010 8.91466 9.07603 9.65715 11.12978 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.005761 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.227517 B = 4858.805424 C = 5953.365596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.575 5.575 4 C 0.225 3.775 5 C -0.506 4.506 6 H 0.050 0.950 7 C 0.070 3.930 8 N -0.891 5.891 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.596 3.404 14 O -0.574 6.574 15 C -0.038 4.038 16 N -0.392 5.392 17 C 0.149 3.851 18 O -0.201 6.201 19 C -0.001 4.001 20 C 0.160 3.840 21 H 0.144 0.856 22 C -0.146 4.146 23 C -0.154 4.154 24 C 0.047 3.953 25 O -0.369 6.369 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.080 0.920 33 H 0.259 0.741 34 H 0.247 0.753 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 4.646 13.174 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.303 5.303 4 C 0.106 3.894 5 C -0.545 4.545 6 H 0.068 0.932 7 C -0.131 4.131 8 N -0.531 5.531 9 Si 0.715 3.285 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.384 3.616 14 O -0.457 6.457 15 C -0.159 4.159 16 N -0.119 5.119 17 C -0.079 4.079 18 O -0.088 6.088 19 C -0.058 4.058 20 C 0.103 3.897 21 H 0.161 0.839 22 C -0.184 4.184 23 C -0.192 4.192 24 C -0.030 4.030 25 O -0.287 6.287 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.839 4.191 12.830 14.706 hybrid contribution 1.101 0.499 -0.129 1.215 sum -4.738 4.691 12.701 14.345 Atomic orbital electron populations 1.22112 0.96681 1.01316 1.01989 1.21323 0.93485 0.83525 1.02725 1.48197 1.60889 1.13051 1.08183 1.19990 0.96354 0.95271 0.77807 1.21252 0.93038 1.34487 1.05764 0.93158 1.24737 0.97150 0.95142 0.96093 1.69924 1.34576 1.36625 1.11977 0.86694 0.86212 0.77444 0.78189 1.20856 1.21264 1.20205 1.16767 0.77176 0.83690 0.83985 1.90612 1.55971 1.67734 1.31400 1.21564 1.09033 0.96722 0.88599 1.71576 1.11349 1.01137 1.27866 1.28353 1.02327 0.98567 0.78617 1.84307 1.65637 1.33108 1.25751 1.23881 1.01784 0.83026 0.97089 1.21711 0.86951 1.00816 0.80262 0.83923 1.23212 0.97186 1.01936 0.96016 1.23313 0.96724 1.02254 0.96865 1.23438 0.93016 0.93413 0.93115 1.88549 1.32366 1.60207 1.47626 0.92847 0.92510 0.92267 0.90233 0.90944 0.95519 0.90299 0.93126 0.73678 0.90289 0.88885 0.89932 0.89690 0.89455 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.23 37.15 0.38 -2.19 16 2 C 0.11 2.12 6.11 -4.04 -0.02 2.09 16 3 N -0.58 -12.87 2.48 -176.33 -0.44 -13.31 16 4 C 0.22 5.66 4.75 -5.19 -0.02 5.64 16 5 C -0.51 -13.90 8.45 -34.44 -0.29 -14.19 16 6 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 8 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.60 13.34 7.60 -12.53 -0.10 13.25 16 14 O -0.57 -12.71 14.16 5.27 0.07 -12.63 16 15 C -0.04 -0.82 6.65 -83.02 -0.55 -1.37 16 16 N -0.39 -8.58 7.16 -11.48 -0.08 -8.66 16 17 C 0.15 2.61 13.19 51.96 0.69 3.29 16 18 O -0.20 -3.50 10.73 6.46 0.07 -3.43 16 19 C 0.00 -0.01 6.19 -35.08 -0.22 -0.23 16 20 C 0.16 2.57 3.81 -27.16 -0.10 2.46 16 21 H 0.14 2.51 5.79 -51.93 -0.30 2.21 16 22 C -0.15 -1.76 6.55 -24.70 -0.16 -1.92 16 23 C -0.15 -1.44 7.16 -24.40 -0.17 -1.61 16 24 C 0.05 0.51 7.78 38.18 0.30 0.81 16 25 O -0.37 -5.82 11.00 -35.29 -0.39 -6.21 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 30 H 0.07 1.34 7.43 -51.93 -0.39 0.96 16 31 H 0.03 0.70 8.02 -51.93 -0.42 0.28 16 32 H 0.08 2.08 5.26 -51.93 -0.27 1.81 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.25 3.14 8.06 -52.49 -0.42 2.72 16 35 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -32.41 335.31 -5.93 -38.34 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.55 Total: 0.85 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.38 Total: 7.86 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.22 Total: -46.43 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.24 Total: -22.28 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.41 -5.93 -38.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343792780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.790 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds