Wall clock time and date at job start Tue Mar 31 2020 08:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46511 * 109.47125 * 2 1 4 4 C 1.46499 * 119.99562 * 267.72239 * 3 2 1 5 5 C 1.50700 * 109.46799 * 263.57168 * 4 3 2 6 6 H 1.07995 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99566 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00280 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99733 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46901 * 90.00605 * 9 7 5 11 11 H 1.48503 * 109.47120 * 210.00226 * 9 7 5 12 12 H 1.48495 * 109.47350 * 330.00607 * 9 7 5 13 13 C 1.34770 * 120.00084 * 87.71695 * 3 2 1 14 14 O 1.21614 * 119.99874 * 4.29677 * 13 3 2 15 15 C 1.47417 * 120.00199 * 184.29335 * 13 3 2 16 16 N 1.36067 * 126.44824 * 354.35508 * 15 13 3 17 17 C 1.29934 * 108.47979 * 180.02562 * 16 15 13 18 18 O 1.34055 * 109.23880 * 0.02562 * 17 16 15 19 19 C 1.34251 * 108.23116 * 359.97438 * 18 17 16 20 20 C 1.50696 * 126.52809 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.82601 * 195.67950 * 20 19 18 22 22 C 1.54387 * 109.82693 * 74.79536 * 20 19 18 23 23 C 1.55452 * 102.18608 * 219.18276 * 22 20 19 24 24 C 1.54945 * 100.98935 * 34.04054 * 23 22 20 25 25 O 1.43238 * 109.83158 * 316.57345 * 20 19 18 26 26 H 1.09000 * 109.47446 * 299.99786 * 1 2 3 27 27 H 1.09001 * 109.47381 * 59.99951 * 1 2 3 28 28 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47446 * 240.00214 * 2 1 3 30 30 H 1.08996 * 109.47554 * 119.99622 * 2 1 3 31 31 H 1.08996 * 109.47689 * 23.58132 * 4 3 2 32 32 H 1.09004 * 109.46923 * 143.58089 * 4 3 2 33 33 H 0.97001 * 120.00320 * 179.97438 * 8 7 5 34 34 H 1.07993 * 125.38270 * 179.97438 * 17 16 15 35 35 H 1.09000 * 110.84764 * 337.32250 * 22 20 19 36 36 H 1.09006 * 110.84600 * 100.94372 * 22 20 19 37 37 H 1.09001 * 111.05667 * 276.12492 * 23 22 20 38 38 H 1.08995 * 111.18130 * 152.01034 * 23 22 20 39 39 H 1.09001 * 110.31000 * 204.69350 * 24 23 22 40 40 H 1.08997 * 110.31114 * 82.51801 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3100 2.0550 -1.2678 5 6 3.7830 1.9467 -1.5668 6 1 4.4364 1.4275 -0.8814 7 6 4.2964 2.5104 -2.7156 8 7 3.5009 3.1429 -3.5501 9 14 6.1222 2.3755 -3.0867 10 1 6.3774 1.1428 -3.8747 11 1 6.5575 3.5611 -3.8678 12 1 6.8832 2.3151 -1.8130 13 6 2.1991 2.0321 1.1662 14 8 2.0321 1.4489 2.2202 15 6 2.5993 3.4509 1.1642 16 7 2.9245 4.1976 0.0742 17 6 3.2219 5.3985 0.4714 18 8 3.1015 5.4652 1.8048 19 6 2.7141 4.2602 2.2524 20 6 2.4554 3.8767 3.6866 21 1 2.4283 2.7911 3.7799 22 6 1.1119 4.4763 4.1547 23 6 1.4368 4.9122 5.6110 24 6 2.9203 5.3360 5.4685 25 8 3.4857 4.4111 4.5260 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.7408 1.5838 -2.0691 32 1 2.0308 3.1061 -1.1933 33 1 3.8621 3.5398 -4.3581 34 1 3.5199 6.2138 -0.1711 35 1 0.8375 5.3368 3.5445 36 1 0.3247 3.7223 4.1405 37 1 1.3317 4.0764 6.3027 38 1 0.8156 5.7536 5.9181 39 1 3.4303 5.2569 6.4286 40 1 2.9878 6.3544 5.0861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343792780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:28 Heat of formation + Delta-G solvation = -66.174231 kcal Electronic energy + Delta-G solvation = -24740.762882 eV Core-core repulsion = 21136.166907 eV Total energy + Delta-G solvation = -3604.595975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.34153 -40.63546 -40.34150 -36.99158 -35.72959 -34.59116 -33.35659 -32.54018 -31.93495 -29.26806 -28.68245 -25.75587 -24.88702 -24.29744 -23.47120 -22.70568 -21.97388 -20.49593 -18.79175 -18.21347 -17.84334 -17.69474 -17.47419 -17.23707 -16.73329 -16.31111 -16.06513 -15.75594 -15.09113 -14.72862 -14.54029 -14.39566 -14.22095 -14.08984 -13.66657 -13.37668 -13.11572 -12.86871 -12.81503 -12.69399 -12.61378 -12.23361 -12.19420 -12.14712 -11.91836 -11.82216 -11.65966 -11.21327 -10.88069 -10.80648 -10.34524 -9.95325 -9.39564 -8.06252 -6.13624 0.06683 1.25175 1.38573 1.40399 1.49533 1.63627 2.22387 2.36009 2.48277 2.81764 3.25553 3.27524 3.41191 3.47744 3.81187 3.87317 4.10335 4.19196 4.22926 4.36551 4.38774 4.53408 4.55621 4.68433 4.76299 4.81515 4.85136 4.91413 4.96105 5.00536 5.06542 5.17476 5.20224 5.28511 5.54596 5.87219 5.87467 5.92515 6.25178 6.49555 6.68229 6.94898 7.23284 7.51546 9.01061 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.005761 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.227517 B = 4858.805424 C = 5953.365596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.105 3.895 3 N -0.584 5.584 4 C 0.243 3.757 5 C -0.513 4.513 6 H 0.029 0.971 7 C 0.034 3.966 8 N -0.913 5.913 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.286 1.286 13 C 0.589 3.411 14 O -0.580 6.580 15 C -0.079 4.079 16 N -0.443 5.443 17 C 0.166 3.834 18 O -0.193 6.193 19 C 0.014 3.986 20 C 0.157 3.843 21 H 0.122 0.878 22 C -0.142 4.142 23 C -0.140 4.140 24 C 0.035 3.965 25 O -0.394 6.394 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.263 0.737 34 H 0.289 0.711 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 5.684 14.328 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 N -0.312 5.312 4 C 0.122 3.878 5 C -0.552 4.552 6 H 0.047 0.953 7 C -0.165 4.165 8 N -0.553 5.553 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.211 1.211 13 C 0.378 3.622 14 O -0.463 6.463 15 C -0.198 4.198 16 N -0.170 5.170 17 C -0.062 4.062 18 O -0.080 6.080 19 C -0.044 4.044 20 C 0.099 3.901 21 H 0.140 0.860 22 C -0.180 4.180 23 C -0.177 4.177 24 C -0.040 4.040 25 O -0.314 6.314 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.028 0.972 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.304 0.696 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.002 5.211 13.995 16.094 hybrid contribution 1.176 0.220 -0.415 1.266 sum -4.826 5.431 13.579 15.401 Atomic orbital electron populations 1.22007 0.94145 1.03315 1.01348 1.21543 0.95591 0.81911 1.02653 1.48213 1.61429 1.14234 1.07362 1.19585 0.94868 0.94883 0.78445 1.21283 0.93869 1.34487 1.05595 0.95294 1.25301 1.00569 0.94795 0.95869 1.69999 1.36008 1.37012 1.12276 0.85834 0.81842 0.77916 0.77555 1.20168 1.20145 1.21144 1.17007 0.76985 0.84385 0.83847 1.90588 1.56333 1.68173 1.31252 1.21578 1.11725 0.96798 0.89728 1.71436 1.13576 1.02969 1.29040 1.29196 0.99894 0.98311 0.78804 1.84342 1.65339 1.32482 1.25811 1.24364 0.99544 0.82676 0.97784 1.21708 0.89219 1.00007 0.79174 0.86044 1.23216 0.94970 1.01887 0.97882 1.23322 0.95776 1.03662 0.94944 1.23772 0.94343 0.92822 0.93061 1.88519 1.33245 1.61270 1.48358 0.93406 0.93103 0.88914 0.90348 0.90879 0.97222 0.91223 0.92814 0.69578 0.90161 0.88357 0.88873 0.86726 0.87274 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 10.23 71.98 0.74 -3.93 16 2 C 0.11 4.02 6.11 86.37 0.53 4.55 16 3 N -0.58 -26.93 2.48 -830.05 -2.06 -28.99 16 4 C 0.24 12.59 4.75 85.63 0.41 13.00 16 5 C -0.51 -28.81 8.45 25.60 0.22 -28.59 16 6 H 0.03 1.71 7.81 -2.91 -0.02 1.69 16 7 C 0.03 1.90 5.46 84.66 0.46 2.36 16 8 N -0.91 -51.71 13.29 21.45 0.28 -51.43 16 9 Si 0.94 44.43 29.54 68.60 2.03 46.46 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 C 0.59 27.16 7.60 86.66 0.66 27.82 16 14 O -0.58 -26.30 14.16 -4.07 -0.06 -26.35 16 15 C -0.08 -3.45 6.65 40.41 0.27 -3.18 16 16 N -0.44 -19.63 7.16 -305.15 -2.19 -21.82 16 17 C 0.17 5.66 13.19 130.52 1.72 7.38 16 18 O -0.19 -6.54 10.73 0.44 0.00 -6.53 16 19 C 0.01 0.53 6.19 25.19 0.16 0.69 16 20 C 0.16 4.98 3.81 30.32 0.12 5.09 16 21 H 0.12 4.37 5.79 -2.39 -0.01 4.36 16 22 C -0.14 -3.20 6.55 31.91 0.21 -2.99 16 23 C -0.14 -2.18 7.16 32.10 0.23 -1.95 16 24 C 0.04 0.69 7.78 72.65 0.57 1.26 16 25 O -0.39 -12.08 11.00 -148.93 -1.64 -13.72 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.95 8.05 -2.39 -0.02 2.94 16 30 H 0.07 2.75 7.43 -2.39 -0.02 2.73 16 31 H 0.01 0.53 8.02 -2.39 -0.02 0.51 16 32 H 0.07 3.80 5.26 -2.38 -0.01 3.79 16 33 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.29 6.71 8.06 -2.91 -0.02 6.68 16 35 H 0.08 1.78 7.84 -2.39 -0.02 1.77 16 36 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -71.01 335.31 3.70 -67.31 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.05 Total: 13.60 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 6.27 Total: 21.48 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -3.96 Total: -102.24 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -1.69 Total: -46.61 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.01 3.70 -67.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343792780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.137 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds