Wall clock time and date at job start Tue Mar 31 2020 06:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46967 * 2 1 4 4 H 1.08998 * 109.47293 * 305.69428 * 3 2 1 5 5 C 1.50695 * 109.47119 * 185.69047 * 3 2 1 6 6 H 1.08003 * 120.00323 * 275.00608 * 5 3 2 7 7 C 1.37879 * 120.00149 * 95.00410 * 5 3 2 8 8 N 1.31510 * 120.00394 * 184.83440 * 7 5 3 9 9 Si 1.86807 * 119.99697 * 4.82914 * 7 5 3 10 10 H 1.48500 * 109.46733 * 84.86025 * 9 7 5 11 11 H 1.48500 * 109.47182 * 204.85960 * 9 7 5 12 12 H 1.48497 * 109.47229 * 324.86305 * 9 7 5 13 13 N 1.46504 * 109.47005 * 65.69279 * 3 2 1 14 14 C 1.34776 * 119.99814 * 274.99657 * 13 3 2 15 15 O 1.21605 * 120.00132 * 0.02562 * 14 13 3 16 16 C 1.47403 * 119.99750 * 179.97438 * 14 13 3 17 17 C 1.41254 * 126.45603 * 359.97438 * 16 14 13 18 18 C 1.36441 * 107.00755 * 179.97438 * 17 16 14 19 19 C 1.46629 * 125.86022 * 179.97438 * 18 17 16 20 20 O 1.21600 * 119.99937 * 359.97438 * 19 18 17 21 21 O 1.34874 * 119.99821 * 180.02562 * 19 18 17 22 22 C 1.45203 * 117.00062 * 179.97438 * 21 19 18 23 23 N 1.37833 * 108.28103 * 359.97438 * 18 17 16 24 24 C 1.46492 * 125.39850 * 180.02562 * 23 18 17 25 25 C 1.34242 * 109.20777 * 0.26354 * 23 18 17 26 26 H 1.08997 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46869 * 299.99918 * 1 2 3 28 28 H 1.08996 * 109.47244 * 59.99863 * 1 2 3 29 29 H 1.08996 * 109.47139 * 240.00436 * 2 1 3 30 30 H 1.09003 * 109.47113 * 119.99765 * 2 1 3 31 31 H 0.97006 * 120.00278 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99701 * 94.99757 * 13 3 2 33 33 H 1.08005 * 126.49408 * 0.02562 * 17 16 14 34 34 H 1.09004 * 109.46469 * 60.00166 * 22 21 19 35 35 H 1.08998 * 109.47143 * 179.97438 * 22 21 19 36 36 H 1.08996 * 109.47437 * 300.00394 * 22 21 19 37 37 H 1.09000 * 109.47382 * 89.99669 * 24 23 18 38 38 H 1.09005 * 109.47096 * 329.99568 * 24 23 18 39 39 H 1.09005 * 109.47375 * 210.00294 * 24 23 18 40 40 H 1.07995 * 125.79411 * 179.73874 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5958 1.9850 -0.8346 5 6 3.5403 1.4450 -0.1409 6 1 4.1650 1.3334 0.7331 7 6 4.1157 1.5894 -1.3855 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9171 -2.8785 10 1 2.7753 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7332 13 7 1.6667 2.0925 1.2588 14 6 0.4508 2.6589 1.3901 15 8 -0.3366 2.6301 0.4638 16 6 0.0750 3.3123 2.6568 17 6 0.8771 3.4233 3.8142 18 6 0.1430 4.0985 4.7452 19 6 0.5820 4.4409 6.1017 20 8 1.6907 4.1172 6.4819 21 8 -0.2445 5.1139 6.9282 22 6 0.2562 5.4185 8.2567 23 7 -1.0819 4.4035 4.1919 24 6 -2.1619 5.1267 4.8675 25 6 -1.1305 3.9281 2.9373 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8252 1.5985 -2.3973 32 1 2.2947 2.1151 1.9978 33 1 1.8815 3.0460 3.9382 34 1 1.1528 6.0330 8.1749 35 1 -0.5057 5.9609 8.8166 36 1 0.4975 4.4909 8.7756 37 1 -2.0512 6.1961 4.6877 38 1 -2.1150 4.9317 5.9390 39 1 -3.1232 4.7904 4.4789 40 1 -1.9682 4.0144 2.2612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346717649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:51 Heat of formation + Delta-G solvation = -77.043620 kcal Electronic energy + Delta-G solvation = -23593.216257 eV Core-core repulsion = 19988.148950 eV Total energy + Delta-G solvation = -3605.067307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74543 -40.10187 -38.65254 -36.68390 -35.04408 -33.26207 -32.21440 -31.21905 -30.17500 -27.87218 -27.66537 -26.65111 -23.52653 -22.92735 -22.13178 -20.20616 -19.86880 -19.31715 -18.33586 -17.20635 -16.78189 -16.75374 -15.89007 -15.53808 -15.41759 -15.19001 -14.46359 -14.23744 -13.97747 -13.54737 -13.47066 -13.24753 -12.85061 -12.71067 -12.58459 -12.30951 -12.20858 -12.05285 -11.81630 -11.72415 -11.11552 -10.92921 -10.88402 -10.60810 -10.59013 -9.92950 -9.77789 -9.17619 -9.08729 -8.94717 -8.63428 -8.46052 -7.85869 -6.16934 -4.20042 1.08291 2.00913 2.32809 2.54774 2.89132 3.31910 3.39170 3.46991 4.08452 4.15936 4.38709 4.47110 4.57060 4.77154 4.86371 4.87528 4.90964 5.15437 5.18443 5.22194 5.27732 5.41657 5.73398 5.99030 6.05697 6.14515 6.17144 6.34225 6.44887 6.64697 6.75934 6.86931 6.90417 7.06626 7.10481 7.38107 7.46166 7.52237 7.66877 8.24172 8.69696 8.85286 9.12823 9.45720 10.94856 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.003773 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.180642 B = 7419.148735 C = 8046.429983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.238 3.762 4 H 0.051 0.949 5 C -0.529 4.529 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.258 1.258 13 N -0.697 5.697 14 C 0.575 3.425 15 O -0.561 6.561 16 C -0.223 4.223 17 C -0.056 4.056 18 C -0.060 4.060 19 C 0.538 3.462 20 O -0.496 6.496 21 O -0.365 6.365 22 C 0.037 3.963 23 N -0.417 5.417 24 C 0.064 3.936 25 C 0.101 3.899 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.393 0.607 33 H 0.160 0.840 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.521 7.893 16.733 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.136 3.864 4 H 0.069 0.931 5 C -0.567 4.567 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.344 5.344 14 C 0.361 3.639 15 O -0.443 6.443 16 C -0.232 4.232 17 C -0.082 4.082 18 C -0.167 4.167 19 C 0.384 3.616 20 O -0.383 6.383 21 O -0.283 6.283 22 C -0.057 4.057 23 N -0.091 5.091 24 C -0.076 4.076 25 C -0.040 4.040 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.227 0.773 33 H 0.177 0.823 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -15.777 7.975 16.326 24.064 hybrid contribution 0.013 0.295 -0.250 0.387 sum -15.764 8.270 16.077 23.987 Atomic orbital electron populations 1.21904 0.97431 0.98720 1.02122 1.22072 0.93700 0.99474 1.01178 1.19162 0.95422 0.89070 0.82779 0.93088 1.21039 0.88769 1.51476 0.95464 0.90310 1.24937 0.94852 0.93739 0.98784 1.69888 1.09774 1.48541 1.24416 0.86909 0.81325 0.79629 0.82189 1.19893 1.21328 1.18260 1.46429 1.14228 1.55586 1.18146 1.17322 0.82684 0.78354 0.85543 1.90722 1.51270 1.61316 1.40946 1.19974 0.95777 1.10908 0.96524 1.21333 0.99509 0.96650 0.90697 1.18896 0.89221 1.15472 0.93131 1.19824 0.82840 0.75007 0.83960 1.90926 1.20559 1.51452 1.75382 1.86575 1.46027 1.69380 1.26302 1.23276 1.00956 1.01627 0.79835 1.43764 1.12331 1.41392 1.11566 1.22353 0.88466 0.97210 0.99615 1.22412 0.99712 0.96723 0.85146 0.95249 0.92986 0.93132 0.92164 0.92998 0.92316 0.77344 0.82270 0.91666 0.88071 0.91693 0.90127 0.88188 0.89232 0.79666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.53 37.16 0.32 -2.61 16 2 C -0.13 -2.76 5.59 -26.73 -0.15 -2.91 16 3 C 0.24 5.72 1.89 -69.08 -0.13 5.58 16 4 H 0.05 1.33 4.73 -51.93 -0.25 1.09 16 5 C -0.53 -14.42 9.05 -34.44 -0.31 -14.73 16 6 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 7 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 8 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 9 Si 0.87 21.78 26.99 -169.99 -4.59 17.19 16 10 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.26 -6.32 6.82 56.52 0.39 -5.93 16 13 N -0.70 -14.49 5.02 -56.01 -0.28 -14.77 16 14 C 0.57 11.32 6.41 -12.53 -0.08 11.24 16 15 O -0.56 -12.43 14.04 5.27 0.07 -12.36 16 16 C -0.22 -3.52 6.13 -105.02 -0.64 -4.17 16 17 C -0.06 -0.82 10.03 -39.08 -0.39 -1.21 16 18 C -0.06 -0.79 6.82 -82.43 -0.56 -1.35 16 19 C 0.54 6.88 7.92 34.12 0.27 7.15 16 20 O -0.50 -7.64 16.65 -19.34 -0.32 -7.96 16 21 O -0.37 -3.49 7.91 -40.97 -0.32 -3.82 16 22 C 0.04 0.25 10.57 101.05 1.07 1.31 16 23 N -0.42 -4.53 3.13 -120.15 -0.38 -4.90 16 24 C 0.06 0.41 10.51 59.84 0.63 1.04 16 25 C 0.10 1.27 11.17 -16.50 -0.18 1.09 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.05 5.63 -51.92 -0.29 0.76 16 28 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.39 7.45 7.57 -40.82 -0.31 7.14 16 33 H 0.16 2.26 7.54 -52.48 -0.40 1.87 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.61 6.08 -51.93 -0.32 0.29 16 39 H 0.09 0.37 8.13 -51.93 -0.42 -0.05 16 40 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -34.13 337.78 -5.57 -39.69 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.35 Total: 4.94 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.27 Total: 2.63 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.12 Total: -45.42 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.57 Total: -24.14 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.59 Total: 17.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.13 -5.57 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346717649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.352 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds