Wall clock time and date at job start Tue Mar 31 2020 06:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46967 * 2 1 4 4 H 1.08998 * 109.47293 * 305.69428 * 3 2 1 5 5 C 1.50695 * 109.47119 * 185.69047 * 3 2 1 6 6 H 1.08003 * 120.00323 * 275.00608 * 5 3 2 7 7 C 1.37879 * 120.00149 * 95.00410 * 5 3 2 8 8 N 1.31510 * 120.00394 * 184.83440 * 7 5 3 9 9 Si 1.86807 * 119.99697 * 4.82914 * 7 5 3 10 10 H 1.48500 * 109.46733 * 84.86025 * 9 7 5 11 11 H 1.48500 * 109.47182 * 204.85960 * 9 7 5 12 12 H 1.48497 * 109.47229 * 324.86305 * 9 7 5 13 13 N 1.46504 * 109.47005 * 65.69279 * 3 2 1 14 14 C 1.34776 * 119.99814 * 274.99657 * 13 3 2 15 15 O 1.21605 * 120.00132 * 0.02562 * 14 13 3 16 16 C 1.47403 * 119.99750 * 179.97438 * 14 13 3 17 17 C 1.41254 * 126.45603 * 359.97438 * 16 14 13 18 18 C 1.36441 * 107.00755 * 179.97438 * 17 16 14 19 19 C 1.46629 * 125.86022 * 179.97438 * 18 17 16 20 20 O 1.21600 * 119.99937 * 359.97438 * 19 18 17 21 21 O 1.34874 * 119.99821 * 180.02562 * 19 18 17 22 22 C 1.45203 * 117.00062 * 179.97438 * 21 19 18 23 23 N 1.37833 * 108.28103 * 359.97438 * 18 17 16 24 24 C 1.46492 * 125.39850 * 180.02562 * 23 18 17 25 25 C 1.34242 * 109.20777 * 0.26354 * 23 18 17 26 26 H 1.08997 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46869 * 299.99918 * 1 2 3 28 28 H 1.08996 * 109.47244 * 59.99863 * 1 2 3 29 29 H 1.08996 * 109.47139 * 240.00436 * 2 1 3 30 30 H 1.09003 * 109.47113 * 119.99765 * 2 1 3 31 31 H 0.97006 * 120.00278 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99701 * 94.99757 * 13 3 2 33 33 H 1.08005 * 126.49408 * 0.02562 * 17 16 14 34 34 H 1.09004 * 109.46469 * 60.00166 * 22 21 19 35 35 H 1.08998 * 109.47143 * 179.97438 * 22 21 19 36 36 H 1.08996 * 109.47437 * 300.00394 * 22 21 19 37 37 H 1.09000 * 109.47382 * 89.99669 * 24 23 18 38 38 H 1.09005 * 109.47096 * 329.99568 * 24 23 18 39 39 H 1.09005 * 109.47375 * 210.00294 * 24 23 18 40 40 H 1.07995 * 125.79411 * 179.73874 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5958 1.9850 -0.8346 5 6 3.5403 1.4450 -0.1409 6 1 4.1650 1.3334 0.7331 7 6 4.1157 1.5894 -1.3855 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9171 -2.8785 10 1 2.7753 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7332 13 7 1.6667 2.0925 1.2588 14 6 0.4508 2.6589 1.3901 15 8 -0.3366 2.6301 0.4638 16 6 0.0750 3.3123 2.6568 17 6 0.8771 3.4233 3.8142 18 6 0.1430 4.0985 4.7452 19 6 0.5820 4.4409 6.1017 20 8 1.6907 4.1172 6.4819 21 8 -0.2445 5.1139 6.9282 22 6 0.2562 5.4185 8.2567 23 7 -1.0819 4.4035 4.1919 24 6 -2.1619 5.1267 4.8675 25 6 -1.1305 3.9281 2.9373 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8252 1.5985 -2.3973 32 1 2.2947 2.1151 1.9978 33 1 1.8815 3.0460 3.9382 34 1 1.1528 6.0330 8.1749 35 1 -0.5057 5.9609 8.8166 36 1 0.4975 4.4909 8.7756 37 1 -2.0512 6.1961 4.6877 38 1 -2.1150 4.9317 5.9390 39 1 -3.1232 4.7904 4.4789 40 1 -1.9682 4.0144 2.2612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346717649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:51 Heat of formation + Delta-G solvation = -100.083466 kcal Electronic energy + Delta-G solvation = -23594.215340 eV Core-core repulsion = 19988.148950 eV Total energy + Delta-G solvation = -3606.066389 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.75127 -41.07842 -40.20711 -37.60311 -36.84447 -34.45628 -34.13501 -32.78931 -31.17628 -29.52788 -28.45888 -27.66189 -24.88445 -24.39210 -23.44503 -21.63980 -20.95584 -20.87105 -19.66438 -18.58050 -18.11262 -17.61606 -17.25753 -17.03716 -16.45727 -16.36060 -15.90090 -15.85369 -15.09584 -14.76239 -14.72226 -14.39540 -14.33514 -13.93400 -13.76605 -13.62212 -13.52905 -13.21076 -13.09867 -12.89073 -12.85334 -12.51310 -12.30621 -11.93951 -11.87440 -11.83604 -11.64019 -11.17174 -10.81500 -10.72959 -9.98095 -9.68092 -9.42932 -8.36190 -6.42219 0.08893 0.80810 1.32316 1.35548 1.45804 1.47484 1.72545 1.86153 2.30131 2.61614 2.67341 3.08301 3.60900 3.84897 3.94347 4.16619 4.27714 4.33693 4.34303 4.38027 4.47286 4.47502 4.58907 4.66369 4.72800 4.82569 4.85843 4.92611 5.15677 5.16905 5.30854 5.33226 5.34317 5.46165 5.61018 5.65681 5.84881 6.02016 6.18446 6.58172 6.62973 7.01458 7.23986 7.56413 8.79144 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.003773 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.180642 B = 7419.148735 C = 8046.429983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.244 3.756 4 H 0.034 0.966 5 C -0.529 4.529 6 H 0.051 0.949 7 C 0.031 3.969 8 N -0.932 5.932 9 Si 0.928 3.072 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.251 1.251 13 N -0.703 5.703 14 C 0.577 3.423 15 O -0.587 6.587 16 C -0.256 4.256 17 C -0.071 4.071 18 C -0.064 4.064 19 C 0.543 3.457 20 O -0.530 6.530 21 O -0.353 6.353 22 C 0.029 3.971 23 N -0.401 5.401 24 C 0.054 3.946 25 C 0.125 3.875 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.270 0.730 32 H 0.399 0.601 33 H 0.151 0.849 34 H 0.060 0.940 35 H 0.141 0.859 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.693 8.943 17.891 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.140 3.860 4 H 0.052 0.948 5 C -0.567 4.567 6 H 0.069 0.931 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.753 3.247 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.175 1.175 13 N -0.351 5.351 14 C 0.366 3.634 15 O -0.471 6.471 16 C -0.265 4.265 17 C -0.097 4.097 18 C -0.172 4.172 19 C 0.390 3.610 20 O -0.420 6.420 21 O -0.270 6.270 22 C -0.064 4.064 23 N -0.073 5.073 24 C -0.084 4.084 25 C -0.019 4.019 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.234 0.766 33 H 0.169 0.831 34 H 0.079 0.921 35 H 0.159 0.841 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -18.985 9.050 17.542 27.387 hybrid contribution 0.943 0.048 -0.408 1.029 sum -18.042 9.099 17.134 26.493 Atomic orbital electron populations 1.21762 0.95537 1.00286 1.01379 1.21987 0.95315 0.97902 1.01076 1.18905 0.93041 0.90343 0.83698 0.94846 1.21247 0.90507 1.50417 0.94509 0.93060 1.25644 0.95838 0.93876 1.01531 1.69994 1.11376 1.50480 1.25263 0.86022 0.80045 0.79346 0.79308 1.19967 1.20333 1.17466 1.46214 1.15323 1.56249 1.17280 1.17722 0.81594 0.77504 0.86589 1.90691 1.51762 1.62343 1.42277 1.19626 0.97948 1.13613 0.95278 1.21314 0.99615 0.97582 0.91174 1.18892 0.89973 1.15119 0.93240 1.19779 0.82506 0.74660 0.84093 1.90913 1.22077 1.52952 1.76060 1.86570 1.45004 1.68228 1.27195 1.23627 1.02363 1.01948 0.78455 1.44045 1.12319 1.40024 1.10914 1.22775 0.88116 0.97765 0.99749 1.22696 0.98909 0.94610 0.85724 0.92472 0.93117 0.94419 0.93008 0.92375 0.92083 0.76633 0.83120 0.92083 0.84145 0.91916 0.88436 0.87613 0.86233 0.77046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.53 71.98 0.61 -4.56 16 2 C -0.12 -5.43 5.59 30.60 0.17 -5.26 16 3 C 0.24 11.85 1.89 44.25 0.08 11.93 16 4 H 0.03 1.76 4.73 -2.39 -0.01 1.74 16 5 C -0.53 -29.64 9.05 25.60 0.23 -29.41 16 6 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 7 C 0.03 1.80 5.47 84.66 0.46 2.27 16 8 N -0.93 -57.05 13.96 21.45 0.30 -56.75 16 9 Si 0.93 45.45 26.99 68.60 1.85 47.31 16 10 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.25 -11.88 6.82 99.48 0.68 -11.20 16 13 N -0.70 -29.75 5.02 -449.39 -2.26 -32.01 16 14 C 0.58 22.64 6.41 86.66 0.56 23.20 16 15 O -0.59 -25.66 14.04 -4.05 -0.06 -25.71 16 16 C -0.26 -7.89 6.13 -20.12 -0.12 -8.01 16 17 C -0.07 -2.09 10.03 22.59 0.23 -1.86 16 18 C -0.06 -1.60 6.82 39.97 0.27 -1.33 16 19 C 0.54 13.21 7.92 70.01 0.55 13.77 16 20 O -0.53 -16.29 16.65 19.51 0.32 -15.96 16 21 O -0.35 -5.86 7.91 -57.87 -0.46 -6.31 16 22 C 0.03 0.31 10.57 113.37 1.20 1.51 16 23 N -0.40 -7.51 3.13 -534.05 -1.67 -9.18 16 24 C 0.05 0.46 10.51 127.77 1.34 1.80 16 25 C 0.12 2.80 11.17 84.33 0.94 3.75 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.98 5.63 -2.38 -0.01 1.97 16 28 H 0.04 1.55 7.88 -2.39 -0.02 1.53 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 32 H 0.40 15.75 7.57 -92.70 -0.70 15.05 16 33 H 0.15 4.51 7.54 -2.91 -0.02 4.49 16 34 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 0.84 6.08 -2.38 -0.01 0.83 16 39 H 0.12 0.38 8.13 -2.38 -0.02 0.36 16 40 H 0.21 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -75.58 337.78 4.91 -70.67 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.34 Total: 20.14 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 6.53 Total: 7.80 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -3.63 Total: -97.93 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.19 Total: -47.99 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.85 Total: 47.31 kcal Total: -75.58 4.91 -70.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346717649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.409 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds