Wall clock time and date at job start Tue Mar 31 2020 06:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 N 1.46497 * 109.47475 * 180.02562 * 16 14 13 18 18 C 1.34776 * 120.00240 * 180.02562 * 17 16 14 19 19 O 1.21608 * 119.99951 * 359.97438 * 18 17 16 20 20 C 1.47378 * 119.99967 * 180.02562 * 18 17 16 21 21 C 1.47027 * 127.19407 * 359.67744 * 20 18 17 22 22 C 1.34172 * 105.95447 * 179.89411 * 21 20 18 23 23 O 1.34221 * 109.12791 * 0.37735 * 22 21 20 24 24 C 1.33660 * 110.90236 * 359.74779 * 23 22 21 25 25 C 1.50694 * 125.79668 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 28 28 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 29 29 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 30 30 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 31 31 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 32 32 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 33 33 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 34 34 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 35 35 H 0.97006 * 119.99714 * 359.97438 * 17 16 14 36 36 H 1.07995 * 127.01954 * 0.02562 * 21 20 18 37 37 H 1.07996 * 125.44048 * 180.12278 * 22 21 20 38 38 H 1.09007 * 109.47193 * 269.99612 * 25 24 23 39 39 H 1.09003 * 109.47635 * 29.99664 * 25 24 23 40 40 H 1.09001 * 109.47175 * 149.99765 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 7 -1.2994 3.8616 2.5657 18 6 -1.8597 4.5067 3.6080 19 8 -1.2365 4.6462 4.6429 20 6 -3.2281 5.0420 3.4940 21 6 -4.1165 4.9688 2.3247 22 6 -5.2523 5.5853 2.6855 23 8 -5.1315 6.0268 3.9472 24 6 -3.9329 5.7141 4.4491 25 6 -3.4435 6.0470 5.8350 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.9548 0.8552 -0.5318 32 1 2.2902 2.1166 1.9978 33 1 0.0991 2.6017 3.4901 34 1 0.7539 4.1436 2.8885 35 1 -1.7964 3.7506 1.7400 36 1 -3.8999 4.5105 1.3712 37 1 -6.1232 5.7103 2.0591 38 1 -2.9477 7.0177 5.8218 39 1 -4.2899 6.0807 6.5210 40 1 -2.7388 5.2836 6.1646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358422606.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:44 Heat of formation + Delta-G solvation = -69.102187 kcal Electronic energy + Delta-G solvation = -23258.168975 eV Core-core repulsion = 19653.446034 eV Total energy + Delta-G solvation = -3604.722940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.80184 -39.90263 -38.86614 -35.58516 -34.32366 -33.24433 -32.54519 -32.08873 -31.57696 -28.56628 -27.26956 -26.38120 -23.33590 -22.39153 -21.39588 -20.60153 -20.09907 -19.64009 -18.41260 -17.67797 -16.59902 -16.41131 -16.21695 -15.75327 -15.50167 -15.17252 -14.68336 -14.36841 -13.78447 -13.53403 -13.33345 -13.23228 -13.14219 -12.99268 -12.85831 -12.59965 -12.45957 -12.15766 -11.98634 -11.68768 -10.97630 -10.76511 -10.49822 -10.12350 -10.06127 -9.95412 -9.68893 -9.38736 -9.20561 -9.10309 -8.79302 -8.39747 -8.22523 -6.63154 -4.27691 1.15089 1.81748 2.53885 3.01108 3.04044 3.25025 3.33983 3.40189 3.55026 3.92360 4.26614 4.37028 4.62434 4.63333 5.00812 5.11134 5.16115 5.25742 5.31168 5.37284 5.41931 5.48294 5.60392 5.89637 6.00120 6.03056 6.04081 6.19232 6.29310 6.61060 6.72263 6.76040 6.86035 6.95952 7.24958 7.30360 7.48712 7.56188 8.12093 8.18149 8.33188 8.60179 8.81923 9.41778 10.77781 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030529 B = 0.003085 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.944062 B = 9075.348153 C = 9533.831735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.248 3.752 4 H 0.043 0.957 5 C -0.619 4.619 6 H 0.062 0.938 7 C 0.039 3.961 8 N -0.897 5.897 9 Si 1.041 2.959 10 H -0.283 1.283 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.693 5.693 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.098 3.902 17 N -0.706 5.706 18 C 0.591 3.409 19 O -0.547 6.547 20 C -0.244 4.244 21 C -0.185 4.185 22 C -0.041 4.041 23 O -0.177 6.177 24 C 0.077 3.923 25 C -0.082 4.082 26 H 0.031 0.969 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.396 0.604 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.412 0.588 36 H 0.160 0.840 37 H 0.208 0.792 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.909 8.152 10.007 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C 0.144 3.856 4 H 0.060 0.940 5 C -0.657 4.657 6 H 0.080 0.920 7 C -0.168 4.168 8 N -0.530 5.530 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.341 5.341 14 C 0.281 3.719 15 O -0.430 6.430 16 C -0.029 4.029 17 N -0.360 5.360 18 C 0.380 3.620 19 O -0.427 6.427 20 C -0.249 4.249 21 C -0.204 4.204 22 C -0.107 4.107 23 O -0.074 6.074 24 C 0.024 3.976 25 C -0.138 4.138 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.230 0.770 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.251 0.749 36 H 0.177 0.823 37 H 0.225 0.775 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.110 7.820 8.608 22.370 hybrid contribution 0.178 0.347 1.256 1.315 sum -18.932 8.167 9.864 22.856 Atomic orbital electron populations 1.21882 0.97393 0.98962 1.01820 1.22373 0.93784 0.99713 1.02019 1.19096 0.95937 0.88578 0.81951 0.93955 1.22091 0.89606 1.49731 1.04248 0.91957 1.25686 0.97548 0.92328 1.01198 1.70869 1.07070 1.40693 1.34353 0.84106 0.75493 0.77674 0.75880 1.20889 1.19502 1.20629 1.46197 1.14183 1.55297 1.18416 1.20304 0.83206 0.79527 0.88857 1.90646 1.50903 1.60407 1.41050 1.21137 0.84725 0.99848 0.97192 1.45475 1.15950 1.57246 1.17330 1.17128 0.84483 0.77353 0.83063 1.90748 1.63590 1.59438 1.28958 1.21096 0.96978 1.10835 0.95974 1.22966 0.93543 1.04318 0.99577 1.23854 1.01090 1.02111 0.83601 1.83771 1.33273 1.63049 1.27268 1.22816 0.82599 0.95678 0.96471 1.20619 1.01707 1.04586 0.86937 0.95011 0.93415 0.93005 0.91170 0.92972 0.92032 0.77043 0.88690 0.88596 0.74948 0.82275 0.77498 0.89300 0.90436 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.53 37.15 0.32 -2.44 16 2 C -0.14 -3.01 5.28 -26.73 -0.14 -3.15 16 3 C 0.25 5.65 1.82 -69.08 -0.13 5.53 16 4 H 0.04 1.05 6.26 -51.93 -0.32 0.73 16 5 C -0.62 -16.25 9.01 -34.44 -0.31 -16.56 16 6 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.30 13.69 55.43 0.76 -25.54 16 9 Si 1.04 24.50 26.27 -169.99 -4.47 20.03 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -5.88 5.67 56.52 0.32 -5.56 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.69 -13.09 5.03 -54.94 -0.28 -13.36 16 14 C 0.50 8.64 6.49 -10.99 -0.07 8.57 16 15 O -0.55 -10.84 12.81 5.56 0.07 -10.77 16 16 C 0.10 1.38 6.15 -5.20 -0.03 1.35 16 17 N -0.71 -9.75 5.52 -62.58 -0.35 -10.09 16 18 C 0.59 8.35 7.81 -12.54 -0.10 8.25 16 19 O -0.55 -8.72 14.84 5.27 0.08 -8.64 16 20 C -0.24 -2.99 6.31 -103.27 -0.65 -3.64 16 21 C -0.18 -1.84 10.60 -37.45 -0.40 -2.24 16 22 C -0.04 -0.34 12.03 29.30 0.35 0.01 16 23 O -0.18 -1.77 10.52 7.62 0.08 -1.69 16 24 C 0.08 0.85 7.37 -34.97 -0.26 0.59 16 25 C -0.08 -0.71 9.89 36.00 0.36 -0.35 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.90 5.63 -51.92 -0.29 0.61 16 28 H 0.05 1.03 7.88 -51.93 -0.41 0.63 16 29 H 0.07 1.59 4.74 -51.92 -0.25 1.34 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.27 7.82 8.73 -40.82 -0.36 7.47 16 32 H 0.40 6.67 8.53 -40.82 -0.35 6.32 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.41 5.56 6.61 -40.82 -0.27 5.29 16 36 H 0.16 1.36 7.74 -52.49 -0.41 0.96 16 37 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 1.09 6.49 -51.93 -0.34 0.76 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -31.97 332.64 -5.48 -37.45 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.24 Total: 10.72 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.15 Total: -3.11 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.14 Total: -49.00 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.23 Total: -21.11 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.47 Total: 20.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.97 -5.48 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358422606.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.648 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds