Wall clock time and date at job start Tue Mar 31 2020 06:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 N 1.46497 * 109.47475 * 180.02562 * 16 14 13 18 18 C 1.34776 * 120.00240 * 180.02562 * 17 16 14 19 19 O 1.21608 * 119.99951 * 359.97438 * 18 17 16 20 20 C 1.47378 * 119.99967 * 180.02562 * 18 17 16 21 21 C 1.47027 * 127.19407 * 359.67744 * 20 18 17 22 22 C 1.34172 * 105.95447 * 179.89411 * 21 20 18 23 23 O 1.34221 * 109.12791 * 0.37735 * 22 21 20 24 24 C 1.33660 * 110.90236 * 359.74779 * 23 22 21 25 25 C 1.50694 * 125.79668 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 28 28 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 29 29 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 30 30 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 31 31 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 32 32 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 33 33 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 34 34 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 35 35 H 0.97006 * 119.99714 * 359.97438 * 17 16 14 36 36 H 1.07995 * 127.01954 * 0.02562 * 21 20 18 37 37 H 1.07996 * 125.44048 * 180.12278 * 22 21 20 38 38 H 1.09007 * 109.47193 * 269.99612 * 25 24 23 39 39 H 1.09003 * 109.47635 * 29.99664 * 25 24 23 40 40 H 1.09001 * 109.47175 * 149.99765 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 7 -1.2994 3.8616 2.5657 18 6 -1.8597 4.5067 3.6080 19 8 -1.2365 4.6462 4.6429 20 6 -3.2281 5.0420 3.4940 21 6 -4.1165 4.9688 2.3247 22 6 -5.2523 5.5853 2.6855 23 8 -5.1315 6.0268 3.9472 24 6 -3.9329 5.7141 4.4491 25 6 -3.4435 6.0470 5.8350 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.9548 0.8552 -0.5318 32 1 2.2902 2.1166 1.9978 33 1 0.0991 2.6017 3.4901 34 1 0.7539 4.1436 2.8885 35 1 -1.7964 3.7506 1.7400 36 1 -3.8999 4.5105 1.3712 37 1 -6.1232 5.7103 2.0591 38 1 -2.9477 7.0177 5.8218 39 1 -4.2899 6.0807 6.5210 40 1 -2.7388 5.2836 6.1646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358422606.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:44 Heat of formation + Delta-G solvation = -92.799661 kcal Electronic energy + Delta-G solvation = -23259.196574 eV Core-core repulsion = 19653.446034 eV Total energy + Delta-G solvation = -3605.750540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.55314 -41.22487 -40.13694 -37.24096 -35.53506 -34.50330 -34.05946 -33.24326 -32.77004 -29.91600 -28.67139 -27.42316 -24.47128 -24.04690 -22.53295 -21.82770 -21.35196 -21.02993 -19.84450 -19.05355 -17.66134 -17.53812 -17.39394 -17.02851 -16.74744 -16.45043 -15.85139 -15.58532 -15.31857 -14.71045 -14.59326 -14.42189 -14.36479 -14.13249 -14.03518 -13.83116 -13.76143 -13.73459 -13.28992 -12.68930 -12.67999 -12.48388 -12.29004 -11.79086 -11.41120 -11.20900 -11.13141 -10.88097 -10.87110 -10.48584 -10.29139 -9.86208 -9.54776 -8.80146 -6.45228 0.28930 1.09995 1.45746 1.50814 1.60289 1.68298 1.73511 2.00672 2.24958 2.42013 2.58277 3.01165 3.58915 3.66678 3.82182 3.88782 4.28259 4.30661 4.32969 4.37753 4.41403 4.54525 4.62957 4.63504 4.75294 4.84383 4.88229 5.11438 5.13961 5.20601 5.25173 5.30068 5.36322 5.54761 5.59516 5.67587 6.00110 6.01026 6.42135 6.51547 6.73057 7.07808 7.24126 7.34667 8.59690 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030529 B = 0.003085 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.944062 B = 9075.348153 C = 9533.831735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C 0.253 3.747 4 H 0.027 0.973 5 C -0.614 4.614 6 H 0.040 0.960 7 C -0.007 4.007 8 N -0.930 5.930 9 Si 1.072 2.928 10 H -0.285 1.285 11 H -0.242 1.242 12 H -0.273 1.273 13 N -0.697 5.697 14 C 0.502 3.498 15 O -0.570 6.570 16 C 0.109 3.891 17 N -0.706 5.706 18 C 0.590 3.410 19 O -0.571 6.571 20 C -0.274 4.274 21 C -0.203 4.203 22 C -0.026 4.026 23 O -0.179 6.179 24 C 0.074 3.926 25 C -0.082 4.082 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.258 0.742 32 H 0.406 0.594 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.414 0.586 36 H 0.169 0.831 37 H 0.250 0.750 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.715 8.507 10.214 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.148 3.852 4 H 0.045 0.955 5 C -0.652 4.652 6 H 0.058 0.942 7 C -0.207 4.207 8 N -0.565 5.565 9 Si 0.894 3.106 10 H -0.211 1.211 11 H -0.166 1.166 12 H -0.198 1.198 13 N -0.345 5.345 14 C 0.288 3.712 15 O -0.451 6.451 16 C -0.018 4.018 17 N -0.359 5.359 18 C 0.380 3.620 19 O -0.453 6.453 20 C -0.279 4.279 21 C -0.223 4.223 22 C -0.091 4.091 23 O -0.075 6.075 24 C 0.021 3.979 25 C -0.138 4.138 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.241 0.759 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.253 0.747 36 H 0.187 0.813 37 H 0.266 0.734 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.938 8.183 8.846 25.030 hybrid contribution 1.021 0.308 1.261 1.651 sum -20.918 8.491 10.107 24.734 Atomic orbital electron populations 1.21766 0.95323 1.00426 1.01532 1.22266 0.95536 0.98242 1.01598 1.18782 0.93390 0.89772 0.83244 0.95501 1.22305 0.91624 1.48107 1.03206 0.94223 1.26849 0.97694 0.92086 1.04085 1.70976 1.08146 1.43325 1.34040 0.83718 0.75186 0.78709 0.72958 1.21131 1.16602 1.19812 1.46010 1.15246 1.55740 1.17528 1.20708 0.82169 0.78666 0.89654 1.90636 1.51342 1.60944 1.42137 1.21046 0.85232 1.00220 0.95339 1.45474 1.15715 1.57283 1.17475 1.17408 0.85140 0.76902 0.82555 1.90729 1.64414 1.60445 1.29739 1.21157 0.96604 1.12388 0.97739 1.23154 0.93895 1.05635 0.99570 1.24648 1.01631 0.99917 0.82896 1.83803 1.32694 1.62958 1.28076 1.23157 0.82722 0.95026 0.96996 1.20657 1.02324 1.04332 0.86442 0.92668 0.93189 0.93776 0.92282 0.92753 0.93305 0.75944 0.87149 0.87635 0.74719 0.81348 0.73437 0.88450 0.88075 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.53 71.98 0.61 -4.19 16 2 C -0.14 -5.70 5.28 30.59 0.16 -5.54 16 3 C 0.25 11.34 1.82 44.24 0.08 11.42 16 4 H 0.03 1.32 6.26 -2.39 -0.01 1.30 16 5 C -0.61 -32.54 9.01 25.60 0.23 -32.31 16 6 H 0.04 2.23 7.96 -2.91 -0.02 2.21 16 7 C -0.01 -0.36 5.32 84.66 0.45 0.09 16 8 N -0.93 -55.67 13.69 21.45 0.29 -55.37 16 9 Si 1.07 48.95 26.27 68.60 1.80 50.76 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.24 -9.92 5.67 99.48 0.56 -9.35 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.70 -25.63 5.03 -446.11 -2.24 -27.87 16 14 C 0.50 16.75 6.49 87.66 0.57 17.32 16 15 O -0.57 -21.61 12.81 -3.03 -0.04 -21.65 16 16 C 0.11 2.90 6.15 85.63 0.53 3.43 16 17 N -0.71 -18.65 5.52 -470.16 -2.60 -21.25 16 18 C 0.59 16.20 7.81 86.65 0.68 16.88 16 19 O -0.57 -17.91 14.84 -4.06 -0.06 -17.97 16 20 C -0.27 -6.42 6.31 -18.99 -0.12 -6.54 16 21 C -0.20 -3.68 10.60 23.65 0.25 -3.43 16 22 C -0.03 -0.36 12.03 66.89 0.80 0.45 16 23 O -0.18 -3.16 10.52 4.34 0.05 -3.11 16 24 C 0.07 1.52 7.37 25.26 0.19 1.70 16 25 C -0.08 -1.30 9.89 71.23 0.70 -0.60 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.76 5.63 -2.38 -0.01 1.75 16 28 H 0.04 1.65 7.88 -2.39 -0.02 1.63 16 29 H 0.06 2.57 4.74 -2.38 -0.01 2.55 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.26 15.48 8.73 -92.71 -0.81 14.67 16 32 H 0.41 13.37 8.53 -92.71 -0.79 12.58 16 33 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.41 10.68 6.61 -92.70 -0.61 10.07 16 36 H 0.17 2.59 7.74 -2.91 -0.02 2.57 16 37 H 0.25 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.83 6.49 -2.39 -0.02 1.82 16 Total: -1.00 -68.95 332.64 1.84 -67.11 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.49 Total: 30.68 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 5.14 Total: -1.31 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -4.55 Total: -104.50 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.05 Total: -42.74 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.80 Total: 50.76 kcal Total: -68.95 1.84 -67.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358422606.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.693 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds