Wall clock time and date at job start Tue Mar 31 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47688 * 2 1 4 4 C 1.53003 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46950 * 304.99571 * 4 3 2 6 6 C 1.53009 * 109.46969 * 185.00238 * 4 3 2 7 7 C 1.52998 * 109.46934 * 175.06604 * 6 4 3 8 8 S 1.81401 * 109.47022 * 65.00172 * 4 3 2 9 9 O 1.42094 * 109.46704 * 181.59864 * 8 4 3 10 10 C 1.81402 * 102.99987 * 65.21307 * 8 4 3 11 11 C 1.50696 * 109.47100 * 179.36570 * 10 8 4 12 12 C 1.38642 * 119.74845 * 269.72810 * 11 10 8 13 13 C 1.37618 * 120.24743 * 179.72120 * 12 11 10 14 14 C 1.40722 * 119.74200 * 0.56787 * 13 12 11 15 15 C 1.41389 * 120.24090 * 179.67857 * 14 13 12 16 16 H 1.08005 * 120.00173 * 205.70834 * 15 14 13 17 17 C 1.39948 * 120.00102 * 25.71387 * 15 14 13 18 18 N 1.30824 * 119.99703 * 16.08420 * 17 15 14 19 19 Si 1.86803 * 120.00017 * 196.07997 * 17 15 14 20 20 H 1.48500 * 109.46780 * 60.00229 * 19 17 15 21 21 H 1.48502 * 109.46859 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47035 * 300.00048 * 19 17 15 23 23 C 1.40714 * 119.51092 * 359.70639 * 14 13 12 24 24 C 1.37614 * 119.74617 * 359.97438 * 23 14 13 25 25 H 1.09009 * 109.46989 * 59.99673 * 1 2 3 26 26 H 1.08995 * 109.47666 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46896 * 300.00105 * 1 2 3 28 28 H 1.08999 * 109.46896 * 239.99895 * 2 1 3 29 29 H 1.08999 * 109.47005 * 120.00883 * 2 1 3 30 30 H 1.09007 * 109.46761 * 60.00023 * 3 2 1 31 31 H 1.08999 * 109.47619 * 300.00507 * 3 2 1 32 32 H 1.08998 * 109.46755 * 295.06615 * 6 4 3 33 33 H 1.09002 * 109.47231 * 55.06618 * 6 4 3 34 34 H 1.09005 * 109.47229 * 307.85731 * 7 6 4 35 35 H 1.08996 * 109.47350 * 67.85016 * 7 6 4 36 36 H 1.08995 * 109.46810 * 187.85765 * 7 6 4 37 37 H 1.09007 * 109.46899 * 59.36579 * 10 8 4 38 38 H 1.09001 * 109.47304 * 299.36665 * 10 8 4 39 39 H 1.08001 * 119.87394 * 359.97250 * 12 11 10 40 40 H 1.07995 * 120.12573 * 180.28001 * 13 12 11 41 41 H 0.97002 * 119.99639 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.12818 * 179.97438 * 23 14 13 43 43 H 1.08000 * 119.87499 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0801 2.8794 0.1264 7 6 5.6050 2.8702 0.2508 8 16 4.1754 0.7193 -1.5490 9 8 5.5958 0.6853 -1.5327 10 6 3.6133 1.9065 -2.8001 11 6 4.0593 1.4475 -4.1644 12 6 5.2851 1.8612 -4.6628 13 6 5.7050 1.4435 -5.9051 14 6 4.8796 0.6031 -6.6749 15 6 5.2976 0.1732 -7.9554 16 1 4.5640 -0.0988 -8.6999 17 6 6.6620 0.1000 -8.2581 18 7 7.5475 0.1183 -7.2952 19 14 7.2188 -0.0239 -10.0369 20 1 6.7483 1.1683 -10.7869 21 1 8.7016 -0.0870 -10.0882 22 1 6.6491 -1.2507 -10.6495 23 6 3.6351 0.1942 -6.1613 24 6 3.2385 0.6189 -4.9138 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.7911 3.4462 -0.7586 33 1 3.6461 3.3427 1.0125 34 1 5.9003 2.1913 1.0508 35 1 6.0443 2.5367 -0.6893 36 1 5.9569 3.8761 0.4797 37 1 4.0409 2.8867 -2.5888 38 1 2.5255 1.9718 -2.7763 39 1 5.9145 2.5103 -4.0723 40 1 6.6622 1.7633 -6.2895 41 1 8.4932 0.0679 -7.5051 42 1 2.9935 -0.4504 -6.7438 43 1 2.2838 0.3060 -4.5173 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359429756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:56 Heat of formation + Delta-G solvation = -52.741819 kcal Electronic energy + Delta-G solvation = -21448.392399 eV Core-core repulsion = 18390.672112 eV Total energy + Delta-G solvation = -3057.720287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -37.62337 -36.68920 -35.30388 -33.96968 -33.37062 -31.20344 -29.31125 -28.90131 -27.52325 -24.33382 -23.90437 -21.40189 -21.16423 -21.01222 -20.13358 -17.31033 -17.02166 -16.27439 -15.32986 -15.16513 -14.74949 -14.42894 -14.19887 -13.88487 -13.73228 -13.64978 -13.03856 -12.64901 -12.49664 -12.47943 -12.31240 -11.97516 -11.92782 -11.64222 -11.57507 -11.35324 -11.17796 -11.11648 -11.02004 -10.87482 -10.72110 -10.63254 -10.48634 -10.36565 -9.78682 -9.48944 -9.38381 -9.09129 -7.83694 -7.46257 -7.17107 -6.75506 -4.36061 1.85649 2.79145 3.02863 3.05998 3.07734 3.09652 3.29909 3.92210 4.23718 4.56218 4.63195 4.85854 4.92899 5.09380 5.16839 5.30040 5.44420 5.54807 5.64253 5.66444 5.67927 5.73781 5.74942 5.83912 5.88810 5.97302 6.04001 6.09686 6.18391 6.22581 6.28633 6.36895 6.40324 6.48203 6.94443 7.05648 7.24586 7.33110 7.59079 7.81125 8.03382 8.07065 8.26837 8.62074 8.87027 8.94935 10.18226 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024160 B = 0.003759 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.664118 B = 7446.221045 C = 8179.210916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C -0.088 4.088 4 C -0.424 4.424 5 H 0.106 0.894 6 C -0.113 4.113 7 C -0.174 4.174 8 S 1.222 4.778 9 O -0.836 6.836 10 C -0.356 4.356 11 C -0.204 4.204 12 C -0.086 4.086 13 C -0.161 4.161 14 C 0.113 3.887 15 C -0.460 4.460 16 H 0.079 0.921 17 C 0.074 3.926 18 N -0.790 5.790 19 Si 0.910 3.090 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.225 4.225 24 C -0.083 4.083 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.282 0.718 42 H 0.095 0.905 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.535 0.805 12.022 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C -0.126 4.126 4 C -0.539 4.539 5 H 0.124 0.876 6 C -0.151 4.151 7 C -0.232 4.232 8 S 1.422 4.578 9 O -0.832 6.832 10 C -0.493 4.493 11 C -0.207 4.207 12 C -0.106 4.106 13 C -0.181 4.181 14 C 0.110 3.890 15 C -0.490 4.490 16 H 0.097 0.903 17 C -0.144 4.144 18 N -0.415 5.415 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.245 4.245 24 C -0.103 4.103 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.735 -0.050 12.050 15.491 hybrid contribution 1.279 2.043 -0.238 2.422 sum -8.456 1.994 11.812 14.663 Atomic orbital electron populations 1.21771 0.95710 1.01753 1.01795 1.21682 0.96068 0.96644 1.02872 1.21263 0.91398 0.97387 1.02597 1.27796 1.02736 1.04060 1.19333 0.87567 1.21526 0.96312 0.94941 1.02299 1.22092 0.95518 1.01342 1.04203 1.70589 0.94926 1.06728 0.85512 1.93095 1.26675 1.80079 1.83312 1.26185 1.06650 1.10011 1.06463 1.18281 0.98138 1.09750 0.94563 1.20550 0.94629 0.99346 0.96056 1.21304 1.01337 1.00541 0.94916 1.17655 0.90632 0.88281 0.92439 1.19600 0.91874 1.39292 0.98246 0.90324 1.25947 0.96765 0.92477 0.99225 1.69825 1.03087 1.34734 1.33821 0.86348 0.77836 0.79940 0.82487 1.18837 1.20333 1.18928 1.20968 0.99981 1.06906 0.96635 1.20374 0.97195 0.97763 0.94938 0.92398 0.92585 0.93091 0.90746 0.91706 0.91914 0.91263 0.91765 0.92240 0.92762 0.90156 0.92978 0.90427 0.87577 0.89839 0.86435 0.90693 0.88670 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.07 5.76 -26.74 -0.15 -1.22 16 3 C -0.09 -0.80 4.63 -26.73 -0.12 -0.92 16 4 C -0.42 -4.96 2.38 -26.73 -0.06 -5.02 16 5 H 0.11 1.21 8.14 -51.92 -0.42 0.78 16 6 C -0.11 -1.43 5.26 -26.73 -0.14 -1.57 16 7 C -0.17 -2.57 9.30 37.16 0.35 -2.22 16 8 S 1.22 18.52 11.38 -107.50 -1.22 17.30 16 9 O -0.84 -17.90 15.48 -35.23 -0.55 -18.45 16 10 C -0.36 -5.85 5.14 36.00 0.18 -5.67 16 11 C -0.20 -4.37 5.16 -104.33 -0.54 -4.90 16 12 C -0.09 -2.12 9.67 -39.66 -0.38 -2.51 16 13 C -0.16 -4.33 8.69 -38.87 -0.34 -4.67 16 14 C 0.11 3.01 5.57 -106.83 -0.59 2.42 16 15 C -0.46 -12.18 9.06 -37.74 -0.34 -12.52 16 16 H 0.08 1.97 7.90 -52.48 -0.41 1.55 16 17 C 0.07 1.88 5.17 -17.34 -0.09 1.79 16 18 N -0.79 -20.91 10.93 55.55 0.61 -20.30 16 19 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.23 -5.35 9.80 -38.87 -0.38 -5.73 16 24 C -0.08 -1.74 9.67 -39.66 -0.38 -2.13 16 25 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.56 7.14 -51.93 -0.37 0.19 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.07 0.60 6.75 -51.93 -0.35 0.25 16 32 H 0.06 0.82 6.22 -51.93 -0.32 0.50 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.08 1.46 5.79 -51.93 -0.30 1.15 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.31 6.67 -51.92 -0.35 0.96 16 38 H 0.11 1.39 6.99 -51.92 -0.36 1.03 16 39 H 0.08 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.12 3.28 6.19 -52.49 -0.32 2.95 16 41 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 42 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 43 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -31.54 353.21 -10.50 -42.04 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.00 Total: 5.99 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: -2.63 Total: -45.58 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.61 Total: -20.30 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.55 Total: -18.45 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: 18.52 SS G_CDS: -1.22 Total: 17.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.54 -10.50 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359429756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.702 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds