Wall clock time and date at job start Tue Mar 31 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47688 * 2 1 4 4 C 1.53003 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46950 * 304.99571 * 4 3 2 6 6 C 1.53009 * 109.46969 * 185.00238 * 4 3 2 7 7 C 1.52998 * 109.46934 * 175.06604 * 6 4 3 8 8 S 1.81401 * 109.47022 * 65.00172 * 4 3 2 9 9 O 1.42094 * 109.46704 * 181.59864 * 8 4 3 10 10 C 1.81402 * 102.99987 * 65.21307 * 8 4 3 11 11 C 1.50696 * 109.47100 * 179.36570 * 10 8 4 12 12 C 1.38642 * 119.74845 * 269.72810 * 11 10 8 13 13 C 1.37618 * 120.24743 * 179.72120 * 12 11 10 14 14 C 1.40722 * 119.74200 * 0.56787 * 13 12 11 15 15 C 1.41389 * 120.24090 * 179.67857 * 14 13 12 16 16 H 1.08005 * 120.00173 * 205.70834 * 15 14 13 17 17 C 1.39948 * 120.00102 * 25.71387 * 15 14 13 18 18 N 1.30824 * 119.99703 * 16.08420 * 17 15 14 19 19 Si 1.86803 * 120.00017 * 196.07997 * 17 15 14 20 20 H 1.48500 * 109.46780 * 60.00229 * 19 17 15 21 21 H 1.48502 * 109.46859 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47035 * 300.00048 * 19 17 15 23 23 C 1.40714 * 119.51092 * 359.70639 * 14 13 12 24 24 C 1.37614 * 119.74617 * 359.97438 * 23 14 13 25 25 H 1.09009 * 109.46989 * 59.99673 * 1 2 3 26 26 H 1.08995 * 109.47666 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46896 * 300.00105 * 1 2 3 28 28 H 1.08999 * 109.46896 * 239.99895 * 2 1 3 29 29 H 1.08999 * 109.47005 * 120.00883 * 2 1 3 30 30 H 1.09007 * 109.46761 * 60.00023 * 3 2 1 31 31 H 1.08999 * 109.47619 * 300.00507 * 3 2 1 32 32 H 1.08998 * 109.46755 * 295.06615 * 6 4 3 33 33 H 1.09002 * 109.47231 * 55.06618 * 6 4 3 34 34 H 1.09005 * 109.47229 * 307.85731 * 7 6 4 35 35 H 1.08996 * 109.47350 * 67.85016 * 7 6 4 36 36 H 1.08995 * 109.46810 * 187.85765 * 7 6 4 37 37 H 1.09007 * 109.46899 * 59.36579 * 10 8 4 38 38 H 1.09001 * 109.47304 * 299.36665 * 10 8 4 39 39 H 1.08001 * 119.87394 * 359.97250 * 12 11 10 40 40 H 1.07995 * 120.12573 * 180.28001 * 13 12 11 41 41 H 0.97002 * 119.99639 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.12818 * 179.97438 * 23 14 13 43 43 H 1.08000 * 119.87499 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0801 2.8794 0.1264 7 6 5.6050 2.8702 0.2508 8 16 4.1754 0.7193 -1.5490 9 8 5.5958 0.6853 -1.5327 10 6 3.6133 1.9065 -2.8001 11 6 4.0593 1.4475 -4.1644 12 6 5.2851 1.8612 -4.6628 13 6 5.7050 1.4435 -5.9051 14 6 4.8796 0.6031 -6.6749 15 6 5.2976 0.1732 -7.9554 16 1 4.5640 -0.0988 -8.6999 17 6 6.6620 0.1000 -8.2581 18 7 7.5475 0.1183 -7.2952 19 14 7.2188 -0.0239 -10.0369 20 1 6.7483 1.1683 -10.7869 21 1 8.7016 -0.0870 -10.0882 22 1 6.6491 -1.2507 -10.6495 23 6 3.6351 0.1942 -6.1613 24 6 3.2385 0.6189 -4.9138 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.7911 3.4462 -0.7586 33 1 3.6461 3.3427 1.0125 34 1 5.9003 2.1913 1.0508 35 1 6.0443 2.5367 -0.6893 36 1 5.9569 3.8761 0.4797 37 1 4.0409 2.8867 -2.5888 38 1 2.5255 1.9718 -2.7763 39 1 5.9145 2.5103 -4.0723 40 1 6.6622 1.7633 -6.2895 41 1 8.4932 0.0679 -7.5051 42 1 2.9935 -0.4504 -6.7438 43 1 2.2838 0.3060 -4.5173 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359429756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:56 Heat of formation + Delta-G solvation = -70.279714 kcal Electronic energy + Delta-G solvation = -21449.152899 eV Core-core repulsion = 18390.672112 eV Total energy + Delta-G solvation = -3058.480787 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.46040 -37.55464 -36.74905 -35.80974 -34.21017 -32.95838 -31.18680 -29.77079 -29.23610 -25.78014 -25.07111 -22.89978 -22.42208 -21.94284 -21.79810 -19.21558 -18.27657 -17.45603 -17.13090 -16.21640 -16.00857 -15.82372 -15.53252 -15.44759 -15.23578 -14.52637 -14.34988 -14.09847 -13.91887 -13.82095 -13.48906 -13.30873 -13.22583 -13.04705 -12.87190 -12.78818 -12.67547 -12.43054 -12.23819 -12.11598 -11.97072 -11.73913 -11.54956 -11.33800 -11.28872 -11.26083 -11.12639 -10.73975 -9.39779 -9.25228 -8.83097 -8.61968 -6.32958 0.51500 1.11962 1.15332 1.36588 1.49164 1.55176 1.89674 2.19752 2.75110 3.01796 3.65774 3.75152 3.90936 4.03509 4.14413 4.25513 4.38166 4.43036 4.43210 4.47466 4.63179 4.68759 4.76143 4.86144 4.91265 4.95896 4.98505 5.08168 5.12389 5.15435 5.20405 5.26991 5.29667 5.36066 5.44021 5.51083 5.58316 5.69784 5.71059 5.95545 6.10591 6.19495 6.37768 6.70189 6.93267 7.04006 8.33680 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024160 B = 0.003759 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.664118 B = 7446.221045 C = 8179.210916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.142 4.142 3 C -0.086 4.086 4 C -0.403 4.403 5 H 0.116 0.884 6 C -0.116 4.116 7 C -0.177 4.177 8 S 1.250 4.750 9 O -0.908 6.908 10 C -0.360 4.360 11 C -0.190 4.190 12 C -0.108 4.108 13 C -0.192 4.192 14 C 0.077 3.923 15 C -0.499 4.499 16 H 0.083 0.917 17 C 0.029 3.971 18 N -0.834 5.834 19 Si 0.985 3.015 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.253 1.253 23 C -0.234 4.234 24 C -0.077 4.077 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.285 0.715 42 H 0.112 0.888 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 0.712 13.561 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C -0.125 4.125 4 C -0.522 4.522 5 H 0.134 0.866 6 C -0.154 4.154 7 C -0.235 4.235 8 S 1.454 4.546 9 O -0.903 6.903 10 C -0.497 4.497 11 C -0.193 4.193 12 C -0.128 4.128 13 C -0.212 4.212 14 C 0.075 3.925 15 C -0.529 4.529 16 H 0.101 0.899 17 C -0.185 4.185 18 N -0.460 5.460 19 Si 0.805 3.195 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.177 1.177 23 C -0.254 4.254 24 C -0.096 4.096 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.172 0.828 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.085 -0.151 13.549 18.837 hybrid contribution 2.173 2.150 -0.386 3.082 sum -10.912 1.999 13.163 17.215 Atomic orbital electron populations 1.21774 0.94900 1.02218 1.02196 1.21766 0.96824 0.95910 1.03458 1.21346 0.88486 0.98612 1.04021 1.27598 1.04892 1.03390 1.16306 0.86593 1.21598 0.94534 0.95579 1.03673 1.22096 0.97439 1.01902 1.02049 1.69702 0.92465 1.05774 0.86669 1.93019 1.30390 1.81673 1.85237 1.26276 1.09586 1.09936 1.03902 1.18745 0.96256 1.07697 0.96601 1.20722 0.96435 1.00079 0.95564 1.21211 1.01082 1.02468 0.96426 1.18017 0.92231 0.89115 0.93181 1.19894 0.92904 1.41214 0.98844 0.89858 1.26872 0.96425 0.91463 1.03721 1.69927 1.03455 1.36472 1.36186 0.85213 0.77456 0.80255 0.76542 1.18396 1.19739 1.17704 1.21319 0.99074 1.06909 0.98051 1.20911 0.99014 0.96173 0.93517 0.92077 0.92193 0.92664 0.90374 0.91161 0.90252 0.90166 0.91671 0.89523 0.92719 0.94085 0.91791 0.90894 0.82839 0.90796 0.89176 0.90439 0.87001 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.14 -1.62 5.76 30.59 0.18 -1.44 16 3 C -0.09 -1.13 4.63 30.59 0.14 -0.99 16 4 C -0.40 -8.02 2.38 30.60 0.07 -7.95 16 5 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 6 C -0.12 -2.57 5.26 30.60 0.16 -2.41 16 7 C -0.18 -5.09 9.30 71.98 0.67 -4.42 16 8 S 1.25 35.67 11.38 -56.49 -0.64 35.03 16 9 O -0.91 -39.66 15.48 -148.98 -2.31 -41.96 16 10 C -0.36 -10.89 5.14 71.23 0.37 -10.53 16 11 C -0.19 -7.96 5.16 -19.68 -0.10 -8.06 16 12 C -0.11 -5.58 9.67 22.22 0.21 -5.36 16 13 C -0.19 -10.97 8.69 22.73 0.20 -10.78 16 14 C 0.08 4.28 5.57 -21.29 -0.12 4.16 16 15 C -0.50 -27.50 9.06 23.46 0.21 -27.29 16 16 H 0.08 4.31 7.90 -2.91 -0.02 4.28 16 17 C 0.03 1.53 5.17 85.26 0.44 1.97 16 18 N -0.83 -46.93 10.93 21.83 0.24 -46.69 16 19 Si 0.99 39.59 29.59 68.60 2.03 41.62 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 23 C -0.23 -11.02 9.80 22.73 0.22 -10.80 16 24 C -0.08 -3.04 9.67 22.22 0.21 -2.83 16 25 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.83 7.14 -2.39 -0.02 0.81 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.08 0.92 6.75 -2.39 -0.02 0.90 16 32 H 0.06 1.46 6.22 -2.39 -0.01 1.44 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.52 8.13 -2.38 -0.02 1.50 16 35 H 0.04 1.52 5.79 -2.39 -0.01 1.50 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 2.33 6.67 -2.39 -0.02 2.31 16 38 H 0.15 3.16 6.99 -2.39 -0.02 3.15 16 39 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 40 H 0.09 5.50 6.19 -2.91 -0.02 5.48 16 41 H 0.29 14.69 8.30 -92.71 -0.77 13.92 16 42 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -75.10 353.21 3.87 -71.23 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.97 Total: 28.30 kcal Atomic # 6 Polarization: -91.10 SS G_CDS: 3.58 Total: -87.52 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.24 Total: -46.69 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -2.31 Total: -41.96 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Atomic # 16 Polarization: 35.67 SS G_CDS: -0.64 Total: 35.03 kcal Total: -75.10 3.87 -71.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359429756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.946 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds