Wall clock time and date at job start Tue Mar 31 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46993 * 2 1 4 4 C 1.53001 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47027 * 54.99892 * 4 3 2 6 6 C 1.53005 * 109.47149 * 174.99753 * 4 3 2 7 7 C 1.53000 * 109.46837 * 295.93322 * 6 4 3 8 8 S 1.81397 * 109.47218 * 294.99867 * 4 3 2 9 9 O 1.42103 * 109.46882 * 69.04785 * 8 4 3 10 10 C 1.81397 * 103.00093 * 185.43859 * 8 4 3 11 11 C 1.50703 * 109.47037 * 178.03846 * 10 8 4 12 12 C 1.38628 * 119.75093 * 269.72864 * 11 10 8 13 13 C 1.37622 * 120.24991 * 179.72270 * 12 11 10 14 14 C 1.40711 * 119.74234 * 0.56822 * 13 12 11 15 15 C 1.41388 * 120.24619 * 179.67971 * 14 13 12 16 16 H 1.08005 * 120.00691 * 205.82148 * 15 14 13 17 17 C 1.39956 * 119.99863 * 25.82405 * 15 14 13 18 18 N 1.30815 * 119.99551 * 17.48883 * 17 15 14 19 19 Si 1.86804 * 120.00014 * 197.49196 * 17 15 14 20 20 H 1.48502 * 109.46957 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46835 * 119.99877 * 19 17 15 22 22 H 1.48500 * 109.46930 * 239.99807 * 19 17 15 23 23 C 1.40724 * 119.51103 * 359.70736 * 14 13 12 24 24 C 1.37612 * 119.74444 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47339 * 300.00568 * 1 2 3 27 27 H 1.09001 * 109.47430 * 59.99871 * 1 2 3 28 28 H 1.08992 * 109.46806 * 239.99657 * 2 1 3 29 29 H 1.08998 * 109.46713 * 119.99568 * 2 1 3 30 30 H 1.08997 * 109.47343 * 59.99469 * 3 2 1 31 31 H 1.09004 * 109.46723 * 299.99996 * 3 2 1 32 32 H 1.08991 * 109.47141 * 175.93060 * 6 4 3 33 33 H 1.08996 * 109.46899 * 55.92658 * 6 4 3 34 34 H 1.09001 * 109.47395 * 300.60900 * 7 6 4 35 35 H 1.08998 * 109.47579 * 60.61418 * 7 6 4 36 36 H 1.09000 * 109.46746 * 180.61313 * 7 6 4 37 37 H 1.09003 * 109.46825 * 298.04097 * 10 8 4 38 38 H 1.09001 * 109.47066 * 58.04024 * 10 8 4 39 39 H 1.08005 * 119.87365 * 359.97438 * 12 11 10 40 40 H 1.07993 * 120.12508 * 180.27353 * 13 12 11 41 41 H 0.97001 * 119.99609 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.12646 * 179.97438 * 23 14 13 43 43 H 1.08004 * 119.87307 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 6 4.0799 2.8796 -0.1264 7 6 3.6546 3.4551 -1.4788 8 16 4.1753 0.7195 1.5490 9 8 3.8815 -0.6706 1.5696 10 6 5.9702 0.9567 1.4362 11 6 6.6248 0.4419 2.6922 12 6 6.8168 1.2955 3.7674 13 6 7.4083 0.8348 4.9215 14 6 7.8297 -0.5053 5.0029 15 6 8.4447 -0.9881 6.1809 16 1 9.1228 -1.8272 6.1312 17 6 8.1749 -0.3785 7.4115 18 7 7.1250 0.3905 7.5442 19 14 9.3139 -0.6631 8.8645 20 1 10.4200 -1.5662 8.4569 21 1 9.8752 0.6357 9.3152 22 1 8.5515 -1.2855 9.9766 23 6 7.6349 -1.3613 3.9031 24 6 7.0352 -0.8806 2.7616 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 5.1674 2.8868 -0.0543 33 1 3.6586 3.4861 0.6752 34 1 4.0669 2.8423 -2.2804 35 1 2.5667 3.4580 -1.5465 36 1 4.0272 4.4751 -1.5729 37 1 6.3554 0.4101 0.5753 38 1 6.1899 2.0180 1.3208 39 1 6.4972 2.3251 3.7007 40 1 7.5529 1.5005 5.7595 41 1 6.9381 0.8133 8.3970 42 1 7.9548 -2.3915 3.9547 43 1 6.8843 -1.5358 1.9164 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359429758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:59 Heat of formation + Delta-G solvation = -53.654203 kcal Electronic energy + Delta-G solvation = -21118.027871 eV Core-core repulsion = 18060.268020 eV Total energy + Delta-G solvation = -3057.759851 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -37.63510 -36.80237 -35.26861 -34.01386 -33.24595 -31.22020 -29.32792 -28.60718 -27.61460 -25.07761 -23.76888 -21.51700 -21.08436 -20.82411 -20.01819 -17.32510 -17.06144 -16.18977 -15.42358 -15.14751 -14.60992 -14.41178 -14.12399 -14.01983 -13.71608 -13.54096 -13.31524 -12.99588 -12.55048 -12.49341 -12.25868 -11.98714 -11.89219 -11.71213 -11.54850 -11.41215 -11.22409 -11.06871 -10.99557 -10.89958 -10.71398 -10.60442 -10.47671 -10.41699 -9.76020 -9.43597 -9.38349 -9.07796 -7.87500 -7.49590 -7.18587 -6.79990 -4.36951 1.80000 2.75397 3.03594 3.05595 3.06636 3.11972 3.28542 3.91278 4.20057 4.59456 4.60561 4.83250 5.01312 5.11921 5.19869 5.26375 5.41629 5.51788 5.56467 5.61658 5.65912 5.72788 5.76587 5.80339 5.90644 5.93803 6.00757 6.11004 6.14092 6.27966 6.30066 6.33306 6.37922 6.44185 6.92027 7.04529 7.22089 7.31338 7.57643 7.80991 8.01469 8.03713 8.26066 8.59591 8.85514 8.92984 10.14925 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.003336 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.858780 B = 8390.850542 C = 8705.252416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C -0.089 4.089 4 C -0.424 4.424 5 H 0.082 0.918 6 C -0.100 4.100 7 C -0.150 4.150 8 S 1.223 4.777 9 O -0.840 6.840 10 C -0.357 4.357 11 C -0.205 4.205 12 C -0.092 4.092 13 C -0.164 4.164 14 C 0.114 3.886 15 C -0.460 4.460 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.789 5.789 19 Si 0.908 3.092 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.223 4.223 24 C -0.076 4.076 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.281 0.719 42 H 0.092 0.908 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 8.320 -10.170 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C -0.127 4.127 4 C -0.539 4.539 5 H 0.100 0.900 6 C -0.138 4.138 7 C -0.208 4.208 8 S 1.425 4.575 9 O -0.835 6.835 10 C -0.494 4.494 11 C -0.209 4.209 12 C -0.112 4.112 13 C -0.183 4.183 14 C 0.111 3.889 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.414 5.414 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.196 1.196 22 H -0.200 1.200 23 C -0.243 4.243 24 C -0.095 4.095 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.943 8.010 -9.330 15.204 hybrid contribution 1.356 -1.268 -1.281 2.256 sum -7.587 6.742 -10.610 14.683 Atomic orbital electron populations 1.21737 0.95889 1.01514 1.01419 1.21888 0.95937 0.97006 1.03939 1.21289 0.91639 0.97116 1.02669 1.27710 1.02861 1.04319 1.19055 0.89958 1.21235 1.00957 0.93064 0.98537 1.21816 1.01504 1.00313 0.97194 1.70721 0.90048 0.98046 0.98716 1.93078 1.79215 1.31169 1.80073 1.26177 1.16142 1.05786 1.01312 1.18269 1.12915 0.95194 0.94489 1.20539 1.00063 0.97093 0.93491 1.21271 1.04265 0.96003 0.96783 1.17661 0.88450 0.91090 0.91729 1.19658 1.23811 1.14262 0.91197 0.90354 1.25917 0.94373 0.93372 1.00551 1.69823 1.21483 1.23690 1.26449 0.86269 0.80991 0.79233 0.80301 1.18429 1.19635 1.19951 1.20974 1.09150 0.98318 0.95817 1.20403 0.98158 0.94135 0.96819 0.92898 0.92580 0.93210 0.92563 0.89472 0.91043 0.91441 0.91259 0.90448 0.93234 0.92478 0.92732 0.90875 0.87371 0.88700 0.86290 0.90801 0.88946 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.15 -1.91 5.60 -26.73 -0.15 -2.06 16 3 C -0.09 -0.95 4.53 -26.73 -0.12 -1.07 16 4 C -0.42 -4.94 2.37 -26.73 -0.06 -5.00 16 5 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.10 -0.92 5.25 -26.73 -0.14 -1.06 16 7 C -0.15 -1.26 9.64 37.16 0.36 -0.90 16 8 S 1.22 18.48 12.32 -107.50 -1.32 17.15 16 9 O -0.84 -17.62 15.83 -35.23 -0.56 -18.18 16 10 C -0.36 -5.90 5.48 36.01 0.20 -5.70 16 11 C -0.21 -4.41 5.16 -104.33 -0.54 -4.94 16 12 C -0.09 -2.01 9.67 -39.66 -0.38 -2.40 16 13 C -0.16 -4.10 8.69 -38.87 -0.34 -4.44 16 14 C 0.11 3.03 5.56 -106.83 -0.59 2.43 16 15 C -0.46 -12.14 9.05 -37.74 -0.34 -12.48 16 16 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 17 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 18 N -0.79 -19.87 11.03 55.55 0.61 -19.26 16 19 Si 0.91 18.34 29.59 -169.99 -5.03 13.31 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.22 -5.68 9.80 -38.87 -0.38 -6.06 16 24 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.36 5.60 -51.93 -0.29 1.07 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.64 6.32 -51.93 -0.33 0.31 16 32 H 0.07 0.63 6.22 -51.93 -0.32 0.31 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.45 6.46 -51.93 -0.34 0.11 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.23 8.08 -51.92 -0.42 0.81 16 38 H 0.11 1.44 6.62 -51.92 -0.34 1.09 16 39 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.12 3.03 6.25 -52.49 -0.33 2.70 16 41 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 42 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.08 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -30.97 354.82 -10.54 -41.51 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.99 Total: 5.37 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: -2.60 Total: -45.25 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.61 Total: -19.26 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.56 Total: -18.18 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 16 Polarization: 18.48 SS G_CDS: -1.32 Total: 17.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.97 -10.54 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359429758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.144 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds