Wall clock time and date at job start Tue Mar 31 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46993 * 2 1 4 4 C 1.53001 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47027 * 54.99892 * 4 3 2 6 6 C 1.53005 * 109.47149 * 174.99753 * 4 3 2 7 7 C 1.53000 * 109.46837 * 295.93322 * 6 4 3 8 8 S 1.81397 * 109.47218 * 294.99867 * 4 3 2 9 9 O 1.42103 * 109.46882 * 69.04785 * 8 4 3 10 10 C 1.81397 * 103.00093 * 185.43859 * 8 4 3 11 11 C 1.50703 * 109.47037 * 178.03846 * 10 8 4 12 12 C 1.38628 * 119.75093 * 269.72864 * 11 10 8 13 13 C 1.37622 * 120.24991 * 179.72270 * 12 11 10 14 14 C 1.40711 * 119.74234 * 0.56822 * 13 12 11 15 15 C 1.41388 * 120.24619 * 179.67971 * 14 13 12 16 16 H 1.08005 * 120.00691 * 205.82148 * 15 14 13 17 17 C 1.39956 * 119.99863 * 25.82405 * 15 14 13 18 18 N 1.30815 * 119.99551 * 17.48883 * 17 15 14 19 19 Si 1.86804 * 120.00014 * 197.49196 * 17 15 14 20 20 H 1.48502 * 109.46957 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46835 * 119.99877 * 19 17 15 22 22 H 1.48500 * 109.46930 * 239.99807 * 19 17 15 23 23 C 1.40724 * 119.51103 * 359.70736 * 14 13 12 24 24 C 1.37612 * 119.74444 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47339 * 300.00568 * 1 2 3 27 27 H 1.09001 * 109.47430 * 59.99871 * 1 2 3 28 28 H 1.08992 * 109.46806 * 239.99657 * 2 1 3 29 29 H 1.08998 * 109.46713 * 119.99568 * 2 1 3 30 30 H 1.08997 * 109.47343 * 59.99469 * 3 2 1 31 31 H 1.09004 * 109.46723 * 299.99996 * 3 2 1 32 32 H 1.08991 * 109.47141 * 175.93060 * 6 4 3 33 33 H 1.08996 * 109.46899 * 55.92658 * 6 4 3 34 34 H 1.09001 * 109.47395 * 300.60900 * 7 6 4 35 35 H 1.08998 * 109.47579 * 60.61418 * 7 6 4 36 36 H 1.09000 * 109.46746 * 180.61313 * 7 6 4 37 37 H 1.09003 * 109.46825 * 298.04097 * 10 8 4 38 38 H 1.09001 * 109.47066 * 58.04024 * 10 8 4 39 39 H 1.08005 * 119.87365 * 359.97438 * 12 11 10 40 40 H 1.07993 * 120.12508 * 180.27353 * 13 12 11 41 41 H 0.97001 * 119.99609 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.12646 * 179.97438 * 23 14 13 43 43 H 1.08004 * 119.87307 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 6 4.0799 2.8796 -0.1264 7 6 3.6546 3.4551 -1.4788 8 16 4.1753 0.7195 1.5490 9 8 3.8815 -0.6706 1.5696 10 6 5.9702 0.9567 1.4362 11 6 6.6248 0.4419 2.6922 12 6 6.8168 1.2955 3.7674 13 6 7.4083 0.8348 4.9215 14 6 7.8297 -0.5053 5.0029 15 6 8.4447 -0.9881 6.1809 16 1 9.1228 -1.8272 6.1312 17 6 8.1749 -0.3785 7.4115 18 7 7.1250 0.3905 7.5442 19 14 9.3139 -0.6631 8.8645 20 1 10.4200 -1.5662 8.4569 21 1 9.8752 0.6357 9.3152 22 1 8.5515 -1.2855 9.9766 23 6 7.6349 -1.3613 3.9031 24 6 7.0352 -0.8806 2.7616 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 5.1674 2.8868 -0.0543 33 1 3.6586 3.4861 0.6752 34 1 4.0669 2.8423 -2.2804 35 1 2.5667 3.4580 -1.5465 36 1 4.0272 4.4751 -1.5729 37 1 6.3554 0.4101 0.5753 38 1 6.1899 2.0180 1.3208 39 1 6.4972 2.3251 3.7007 40 1 7.5529 1.5005 5.7595 41 1 6.9381 0.8133 8.3970 42 1 7.9548 -2.3915 3.9547 43 1 6.8843 -1.5358 1.9164 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359429758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:59 Heat of formation + Delta-G solvation = -70.406660 kcal Electronic energy + Delta-G solvation = -21118.754312 eV Core-core repulsion = 18060.268020 eV Total energy + Delta-G solvation = -3058.486292 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.47740 -37.68488 -36.70603 -35.82897 -34.13430 -32.94848 -31.19719 -29.40550 -29.31825 -26.22690 -25.23844 -22.93301 -22.41890 -21.94762 -21.58324 -19.23168 -18.28321 -17.30746 -17.18133 -16.46553 -15.82819 -15.67818 -15.58568 -15.41811 -15.15407 -14.63235 -14.43285 -14.28610 -14.02631 -13.80863 -13.55592 -13.41830 -13.22718 -13.02551 -12.76689 -12.72946 -12.50911 -12.40768 -12.36023 -12.12148 -12.08303 -11.72918 -11.57228 -11.49874 -11.32624 -11.23334 -11.05680 -10.59206 -9.38008 -9.31926 -8.87070 -8.63139 -6.32325 0.47281 1.06613 1.15105 1.40236 1.53165 1.55340 1.91396 2.23011 2.73506 2.98576 3.71180 3.72874 3.94528 4.07104 4.10518 4.25872 4.33028 4.38304 4.47483 4.54187 4.59629 4.64745 4.74567 4.85269 4.88212 4.91094 5.00777 5.04019 5.13643 5.16677 5.20921 5.28798 5.32754 5.33676 5.39960 5.44442 5.47481 5.55946 5.68609 5.94940 6.08369 6.16539 6.38236 6.68575 6.93334 7.01649 8.34476 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.003336 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.858780 B = 8390.850542 C = 8705.252416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.155 4.155 3 C -0.091 4.091 4 C -0.402 4.402 5 H 0.069 0.931 6 C -0.104 4.104 7 C -0.150 4.150 8 S 1.250 4.750 9 O -0.907 6.907 10 C -0.362 4.362 11 C -0.193 4.193 12 C -0.087 4.087 13 C -0.183 4.183 14 C 0.081 3.919 15 C -0.503 4.503 16 H 0.068 0.932 17 C 0.039 3.961 18 N -0.818 5.818 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.257 1.257 22 H -0.266 1.266 23 C -0.249 4.249 24 C -0.096 4.096 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.111 0.889 41 H 0.291 0.709 42 H 0.084 0.916 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.404 11.606 -11.031 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.193 4.193 3 C -0.129 4.129 4 C -0.521 4.521 5 H 0.087 0.913 6 C -0.142 4.142 7 C -0.209 4.209 8 S 1.455 4.545 9 O -0.902 6.902 10 C -0.499 4.499 11 C -0.195 4.195 12 C -0.106 4.106 13 C -0.202 4.202 14 C 0.079 3.921 15 C -0.533 4.533 16 H 0.086 0.914 17 C -0.177 4.177 18 N -0.443 5.443 19 Si 0.803 3.197 20 H -0.188 1.188 21 H -0.182 1.182 22 H -0.191 1.191 23 C -0.269 4.269 24 C -0.115 4.115 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.108 11.273 -10.166 18.238 hybrid contribution 1.567 -2.219 -1.278 3.002 sum -8.542 9.054 -11.444 16.909 Atomic orbital electron populations 1.21727 0.94000 1.01705 1.02881 1.21898 0.97751 0.98116 1.01566 1.21406 0.90529 0.95978 1.04977 1.27503 1.03684 1.05609 1.15330 0.91272 1.21395 1.01479 0.91089 1.00273 1.21825 1.02054 1.00898 0.96087 1.69820 0.87937 0.95886 1.00885 1.93005 1.79893 1.34362 1.82962 1.26278 1.16957 1.08236 0.98402 1.18723 1.10669 0.93933 0.96208 1.20979 0.98288 0.99316 0.92037 1.21352 1.05547 0.95320 0.98001 1.17991 0.89646 0.92264 0.92231 1.19836 1.25323 1.15513 0.92608 0.91370 1.26696 0.95543 0.92778 1.02678 1.69840 1.22433 1.24264 1.27797 0.85166 0.78546 0.79496 0.76510 1.18849 1.18168 1.19061 1.21092 1.10674 0.98280 0.96869 1.20634 0.98738 0.95776 0.96377 0.93496 0.91461 0.91319 0.94085 0.92823 0.88715 0.89019 0.90743 0.87702 0.94172 0.91699 0.91239 0.91232 0.82981 0.83918 0.87068 0.89771 0.89731 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.91 71.98 0.71 -2.04 16 2 C -0.16 -3.80 5.60 30.59 0.17 -3.63 16 3 C -0.09 -1.64 4.53 30.59 0.14 -1.51 16 4 C -0.40 -8.18 2.37 30.60 0.07 -8.11 16 5 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 6 C -0.10 -1.42 5.25 30.60 0.16 -1.26 16 7 C -0.15 -1.85 9.64 71.98 0.69 -1.16 16 8 S 1.25 35.84 12.32 -56.49 -0.70 35.14 16 9 O -0.91 -38.80 15.83 -148.98 -2.36 -41.16 16 10 C -0.36 -11.13 5.48 71.24 0.39 -10.73 16 11 C -0.19 -8.13 5.16 -19.68 -0.10 -8.23 16 12 C -0.09 -3.68 9.67 22.22 0.21 -3.47 16 13 C -0.18 -9.31 8.69 22.73 0.20 -9.12 16 14 C 0.08 4.54 5.56 -21.29 -0.12 4.42 16 15 C -0.50 -27.98 9.05 23.46 0.21 -27.77 16 16 H 0.07 3.74 7.90 -2.91 -0.02 3.72 16 17 C 0.04 1.95 5.14 85.26 0.44 2.39 16 18 N -0.82 -41.87 11.03 21.83 0.24 -41.63 16 19 Si 0.98 38.18 29.59 68.60 2.03 40.21 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 22 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 23 C -0.25 -13.48 9.80 22.73 0.22 -13.25 16 24 C -0.10 -4.72 9.67 22.22 0.21 -4.50 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.69 5.60 -2.39 -0.01 1.68 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.32 6.32 -2.38 -0.02 1.30 16 32 H 0.07 0.98 6.22 -2.39 -0.01 0.96 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.71 6.46 -2.39 -0.02 0.69 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 38 H 0.15 3.31 6.62 -2.39 -0.02 3.29 16 39 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 40 H 0.11 5.76 6.25 -2.91 -0.02 5.74 16 41 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 42 H 0.08 4.48 8.06 -2.91 -0.02 4.46 16 43 H 0.08 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -72.45 354.82 3.81 -68.64 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.97 Total: 26.78 kcal Atomic # 6 Polarization: -91.59 SS G_CDS: 3.62 Total: -87.97 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.24 Total: -41.63 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -2.36 Total: -41.16 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: 35.84 SS G_CDS: -0.70 Total: 35.14 kcal Total: -72.45 3.81 -68.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359429758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.763 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds