Wall clock time and date at job start Tue Mar 31 2020 06:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47198 * 2 1 4 4 C 1.52997 * 109.47288 * 119.99869 * 2 1 3 5 5 O 1.42904 * 109.47487 * 175.00159 * 4 2 1 6 6 C 1.42893 * 114.00069 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47335 * 180.02562 * 6 5 4 8 8 S 1.81397 * 109.47364 * 179.97438 * 7 6 5 9 9 C 1.81402 * 102.99865 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47089 * 179.97438 * 9 8 7 11 11 C 1.38632 * 119.75213 * 269.72353 * 10 9 8 12 12 C 1.37614 * 120.25123 * 179.71891 * 11 10 9 13 13 C 1.40719 * 119.74124 * 0.57305 * 12 11 10 14 14 C 1.41395 * 120.24246 * 179.67718 * 13 12 11 15 15 H 1.07998 * 119.99970 * 155.30784 * 14 13 12 16 16 C 1.39951 * 120.00207 * 335.31835 * 14 13 12 17 17 N 1.30818 * 119.99753 * 342.22830 * 16 14 13 18 18 Si 1.86797 * 120.00021 * 162.22875 * 16 14 13 19 19 H 1.48500 * 109.47048 * 94.66426 * 18 16 14 20 20 H 1.48498 * 109.47252 * 214.66382 * 18 16 14 21 21 H 1.48496 * 109.47461 * 334.66371 * 18 16 14 22 22 C 1.40704 * 119.51466 * 359.70404 * 13 12 11 23 23 C 1.37620 * 119.74516 * 359.97438 * 22 13 12 24 24 H 1.08990 * 109.47152 * 299.99942 * 1 2 3 25 25 H 1.08999 * 109.47094 * 60.00134 * 1 2 3 26 26 H 1.08997 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47411 * 240.00231 * 2 1 3 28 28 H 1.09000 * 109.47509 * 300.00007 * 3 2 1 29 29 H 1.09004 * 109.47171 * 59.99934 * 3 2 1 30 30 H 1.09001 * 109.47482 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47042 * 55.00105 * 4 2 1 32 32 H 1.08998 * 109.47320 * 295.00492 * 4 2 1 33 33 H 1.08993 * 109.47600 * 59.99781 * 6 5 4 34 34 H 1.09008 * 109.46760 * 299.99834 * 6 5 4 35 35 H 1.09002 * 109.47064 * 59.99525 * 7 6 5 36 36 H 1.09010 * 109.46610 * 299.99998 * 7 6 5 37 37 H 1.08998 * 109.47189 * 59.99915 * 9 8 7 38 38 H 1.09001 * 109.47280 * 299.99781 * 9 8 7 39 39 H 1.08005 * 119.87401 * 359.97438 * 11 10 9 40 40 H 1.07997 * 120.13194 * 180.28480 * 12 11 10 41 41 H 0.97004 * 119.99893 * 180.02562 * 17 16 14 42 42 H 1.08007 * 120.13445 * 179.97438 * 22 13 12 43 43 H 1.08000 * 119.87742 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4642 -0.8237 1.1921 6 6 4.0449 -1.4855 2.3175 7 6 5.5649 -1.5370 2.1505 8 16 6.3022 -2.3764 3.5796 9 6 8.0765 -2.3398 3.2037 10 6 8.8397 -3.0105 4.3166 11 6 9.2918 -2.2596 5.3907 12 6 9.9848 -2.8625 6.4154 13 6 10.2443 -4.2446 6.3642 14 6 10.9613 -4.8737 7.4079 15 1 10.8301 -5.9296 7.5931 16 6 11.8408 -4.1281 8.2012 17 7 12.2693 -2.9640 7.7859 18 14 12.4027 -4.7953 9.8530 19 1 13.6997 -5.4992 9.6872 20 1 12.5679 -3.6721 10.8102 21 1 11.3873 -5.7449 10.3747 22 6 9.7857 -4.9958 5.2664 23 6 9.0889 -4.3730 4.2562 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.6519 -2.4999 2.3852 34 1 3.7981 -0.9387 3.2276 35 1 5.9576 -0.5224 2.0831 36 1 5.8121 -2.0835 1.2403 37 1 8.4066 -1.3053 3.1092 38 1 8.2605 -2.8669 2.2675 39 1 9.0959 -1.1980 5.4253 40 1 10.3321 -2.2764 7.2534 41 1 12.8792 -2.4474 8.3355 42 1 9.9796 -6.0571 5.2167 43 1 8.7355 -4.9476 3.4128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409872449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:10 Heat of formation + Delta-G solvation = -61.003811 kcal Electronic energy + Delta-G solvation = -19702.502957 eV Core-core repulsion = 16644.424403 eV Total energy + Delta-G solvation = -3058.078554 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.54555 -37.65429 -35.46299 -34.03844 -31.29049 -31.21559 -29.34818 -27.59264 -27.46561 -26.17112 -24.13932 -22.85405 -21.05331 -20.54323 -20.01656 -17.36492 -17.07538 -16.47416 -15.73497 -15.36467 -15.27838 -14.79332 -14.38216 -14.07043 -13.87538 -13.75536 -13.42287 -13.09484 -12.87566 -12.52793 -12.50023 -12.19891 -11.99648 -11.76928 -11.70689 -11.60664 -11.33488 -11.14270 -11.08432 -10.96214 -10.85917 -10.71623 -10.39557 -9.78733 -9.77091 -9.59163 -9.45369 -9.15908 -7.53223 -7.34949 -7.27131 -6.84771 -4.41605 1.71456 2.69239 2.97321 3.02807 3.04704 3.09314 3.35623 3.64179 3.87425 4.52470 4.57046 4.58394 4.78235 4.86816 5.00920 5.16798 5.18163 5.28679 5.34017 5.40753 5.53942 5.56863 5.61185 5.61436 5.68723 5.73277 5.76284 5.77155 5.96222 6.04205 6.14520 6.29766 6.34654 6.89946 6.99466 7.00595 7.20601 7.28771 7.54682 7.77434 7.98412 8.03504 8.21840 8.56293 8.80988 8.89421 10.09021 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.046133 B = 0.002059 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.798860 B =13597.221503 C =13668.967784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.067 3.933 5 O -0.387 6.387 6 C 0.083 3.917 7 C -0.098 4.098 8 S -0.271 6.271 9 C 0.003 3.997 10 C -0.212 4.212 11 C -0.077 4.077 12 C -0.168 4.168 13 C 0.117 3.883 14 C -0.455 4.455 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.787 5.787 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.228 4.228 23 C -0.066 4.066 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.282 0.718 42 H 0.094 0.906 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.519 5.900 -10.466 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.010 4.010 5 O -0.307 6.307 6 C 0.006 3.994 7 C -0.246 4.246 8 S -0.041 6.041 9 C -0.143 4.143 10 C -0.216 4.216 11 C -0.097 4.097 12 C -0.187 4.187 13 C 0.113 3.887 14 C -0.485 4.485 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.411 5.411 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.248 4.248 23 C -0.086 4.086 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.829 5.788 -9.736 19.464 hybrid contribution 0.827 0.192 -0.123 0.857 sum -15.003 5.980 -9.859 18.922 Atomic orbital electron populations 1.21787 0.94337 1.02006 1.02228 1.21105 0.95429 0.96986 0.97916 1.21791 1.02027 0.95035 1.01353 1.22569 0.81180 0.99212 0.98060 1.87842 1.19948 1.79202 1.43733 1.22087 0.91696 0.96894 0.88756 1.23189 0.96834 1.03763 1.00829 1.87278 1.09210 1.77035 1.30560 1.21984 0.89755 1.02460 1.00149 1.18377 1.10296 0.94110 0.98829 1.20521 0.97875 0.97235 0.94116 1.21287 1.02438 0.95769 0.99251 1.17680 0.88504 0.92002 0.90468 1.19670 1.20110 0.96787 1.11889 0.90211 1.25962 0.94795 0.94351 0.99243 1.69824 1.23618 1.11569 1.36138 0.86287 0.79589 0.79638 0.81202 1.19485 1.19939 1.18316 1.20953 1.08892 0.98627 0.96307 1.20376 0.97631 0.93212 0.97394 0.92469 0.92027 0.92492 0.90393 0.92847 0.92889 0.91793 0.93360 0.93301 0.92525 0.92513 0.89947 0.89964 0.91037 0.91116 0.89274 0.86335 0.90692 0.88780 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.10 -0.76 3.16 -90.62 -0.29 -1.05 16 3 C -0.14 -1.15 9.09 37.16 0.34 -0.81 16 4 C 0.07 0.62 5.32 37.16 0.20 0.82 16 5 O -0.39 -4.63 9.88 -35.23 -0.35 -4.98 16 6 C 0.08 1.01 5.95 37.16 0.22 1.23 16 7 C -0.10 -1.32 6.31 37.16 0.23 -1.08 16 8 S -0.27 -4.60 21.72 -107.50 -2.33 -6.94 16 9 C 0.00 0.05 6.06 36.00 0.22 0.27 16 10 C -0.21 -4.61 5.16 -104.33 -0.54 -5.15 16 11 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 12 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 13 C 0.12 3.09 5.57 -106.83 -0.60 2.49 16 14 C -0.46 -11.88 9.05 -37.74 -0.34 -12.22 16 15 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 16 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 17 N -0.79 -19.93 10.97 55.55 0.61 -19.32 16 18 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 22 C -0.23 -5.56 9.80 -38.88 -0.38 -5.94 16 23 C -0.07 -1.47 9.67 -39.66 -0.38 -1.86 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.07 1.20 8.08 -51.92 -0.42 0.78 16 38 H 0.07 1.16 8.08 -51.92 -0.42 0.74 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.12 3.14 6.18 -52.49 -0.32 2.82 16 41 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 42 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -26.82 369.55 -10.78 -37.61 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.46 Total: 3.77 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: -1.79 Total: -28.93 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.61 Total: -19.32 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.35 Total: -4.98 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -2.33 Total: -6.94 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -26.82 -10.78 -37.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409872449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.397 kcal (2) G-P(sol) polarization free energy of solvation -26.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds