Wall clock time and date at job start Tue Mar 31 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47198 * 2 1 4 4 C 1.52997 * 109.47288 * 119.99869 * 2 1 3 5 5 O 1.42904 * 109.47487 * 175.00159 * 4 2 1 6 6 C 1.42893 * 114.00069 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47335 * 180.02562 * 6 5 4 8 8 S 1.81397 * 109.47364 * 179.97438 * 7 6 5 9 9 C 1.81402 * 102.99865 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47089 * 179.97438 * 9 8 7 11 11 C 1.38632 * 119.75213 * 269.72353 * 10 9 8 12 12 C 1.37614 * 120.25123 * 179.71891 * 11 10 9 13 13 C 1.40719 * 119.74124 * 0.57305 * 12 11 10 14 14 C 1.41395 * 120.24246 * 179.67718 * 13 12 11 15 15 H 1.07998 * 119.99970 * 155.30784 * 14 13 12 16 16 C 1.39951 * 120.00207 * 335.31835 * 14 13 12 17 17 N 1.30818 * 119.99753 * 342.22830 * 16 14 13 18 18 Si 1.86797 * 120.00021 * 162.22875 * 16 14 13 19 19 H 1.48500 * 109.47048 * 94.66426 * 18 16 14 20 20 H 1.48498 * 109.47252 * 214.66382 * 18 16 14 21 21 H 1.48496 * 109.47461 * 334.66371 * 18 16 14 22 22 C 1.40704 * 119.51466 * 359.70404 * 13 12 11 23 23 C 1.37620 * 119.74516 * 359.97438 * 22 13 12 24 24 H 1.08990 * 109.47152 * 299.99942 * 1 2 3 25 25 H 1.08999 * 109.47094 * 60.00134 * 1 2 3 26 26 H 1.08997 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47411 * 240.00231 * 2 1 3 28 28 H 1.09000 * 109.47509 * 300.00007 * 3 2 1 29 29 H 1.09004 * 109.47171 * 59.99934 * 3 2 1 30 30 H 1.09001 * 109.47482 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47042 * 55.00105 * 4 2 1 32 32 H 1.08998 * 109.47320 * 295.00492 * 4 2 1 33 33 H 1.08993 * 109.47600 * 59.99781 * 6 5 4 34 34 H 1.09008 * 109.46760 * 299.99834 * 6 5 4 35 35 H 1.09002 * 109.47064 * 59.99525 * 7 6 5 36 36 H 1.09010 * 109.46610 * 299.99998 * 7 6 5 37 37 H 1.08998 * 109.47189 * 59.99915 * 9 8 7 38 38 H 1.09001 * 109.47280 * 299.99781 * 9 8 7 39 39 H 1.08005 * 119.87401 * 359.97438 * 11 10 9 40 40 H 1.07997 * 120.13194 * 180.28480 * 12 11 10 41 41 H 0.97004 * 119.99893 * 180.02562 * 17 16 14 42 42 H 1.08007 * 120.13445 * 179.97438 * 22 13 12 43 43 H 1.08000 * 119.87742 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4642 -0.8237 1.1921 6 6 4.0449 -1.4855 2.3175 7 6 5.5649 -1.5370 2.1505 8 16 6.3022 -2.3764 3.5796 9 6 8.0765 -2.3398 3.2037 10 6 8.8397 -3.0105 4.3166 11 6 9.2918 -2.2596 5.3907 12 6 9.9848 -2.8625 6.4154 13 6 10.2443 -4.2446 6.3642 14 6 10.9613 -4.8737 7.4079 15 1 10.8301 -5.9296 7.5931 16 6 11.8408 -4.1281 8.2012 17 7 12.2693 -2.9640 7.7859 18 14 12.4027 -4.7953 9.8530 19 1 13.6997 -5.4992 9.6872 20 1 12.5679 -3.6721 10.8102 21 1 11.3873 -5.7449 10.3747 22 6 9.7857 -4.9958 5.2664 23 6 9.0889 -4.3730 4.2562 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.6519 -2.4999 2.3852 34 1 3.7981 -0.9387 3.2276 35 1 5.9576 -0.5224 2.0831 36 1 5.8121 -2.0835 1.2403 37 1 8.4066 -1.3053 3.1092 38 1 8.2605 -2.8669 2.2675 39 1 9.0959 -1.1980 5.4253 40 1 10.3321 -2.2764 7.2534 41 1 12.8792 -2.4474 8.3355 42 1 9.9796 -6.0571 5.2167 43 1 8.7355 -4.9476 3.4128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409872449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:09 Heat of formation + Delta-G solvation = -71.629264 kcal Electronic energy + Delta-G solvation = -19702.963712 eV Core-core repulsion = 16644.424403 eV Total energy + Delta-G solvation = -3058.539308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.49299 -39.36561 -36.14836 -35.85751 -33.02641 -32.22888 -31.20950 -29.32770 -28.02136 -26.89797 -25.83431 -23.95220 -22.91965 -21.83324 -21.14384 -19.24767 -17.97725 -17.33913 -17.28093 -16.90053 -16.16288 -16.01103 -15.75533 -15.63711 -15.46364 -14.74357 -14.49303 -14.33355 -13.94535 -13.83787 -13.76143 -13.56278 -13.39421 -13.03171 -12.78669 -12.72123 -12.61689 -12.54576 -12.40841 -12.11053 -11.91095 -11.77082 -11.53868 -11.52562 -11.30457 -11.07026 -10.86072 -10.62890 -9.39396 -9.20497 -8.67590 -8.62555 -6.35171 0.32631 1.09313 1.15315 1.38314 1.48379 1.54053 1.81307 2.19941 2.72737 2.80771 3.73707 3.82533 3.86343 3.93242 4.05011 4.12938 4.14837 4.24881 4.36769 4.48939 4.51183 4.57528 4.58279 4.67987 4.69295 4.70560 4.79297 4.81053 5.00015 5.02862 5.04192 5.13337 5.21974 5.33053 5.38842 5.42177 5.42450 5.67727 5.91626 6.07695 6.16383 6.17084 6.34883 6.66678 6.90719 6.99702 8.29644 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.046133 B = 0.002059 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.798860 B =13597.221503 C =13668.967784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.144 4.144 4 C 0.060 3.940 5 O -0.400 6.400 6 C 0.087 3.913 7 C -0.082 4.082 8 S -0.294 6.294 9 C 0.005 3.995 10 C -0.202 4.202 11 C -0.084 4.084 12 C -0.192 4.192 13 C 0.084 3.916 14 C -0.496 4.496 15 H 0.077 0.923 16 C 0.035 3.965 17 N -0.821 5.821 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.265 1.265 21 H -0.259 1.259 22 C -0.244 4.244 23 C -0.070 4.070 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.290 0.710 42 H 0.099 0.901 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.045 6.346 -11.591 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.016 4.016 5 O -0.320 6.320 6 C 0.009 3.991 7 C -0.230 4.230 8 S -0.065 6.065 9 C -0.142 4.142 10 C -0.205 4.205 11 C -0.104 4.104 12 C -0.212 4.212 13 C 0.081 3.919 14 C -0.525 4.525 15 H 0.095 0.905 16 C -0.180 4.180 17 N -0.446 5.446 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.183 1.183 22 C -0.264 4.264 23 C -0.090 4.090 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.347 6.228 -10.866 21.395 hybrid contribution 1.112 0.149 0.006 1.122 sum -16.235 6.377 -10.860 20.547 Atomic orbital electron populations 1.21765 0.92782 1.02560 1.02886 1.21134 0.96662 0.96612 0.96990 1.21780 1.00911 0.95333 1.02080 1.22781 0.79808 0.99992 0.99019 1.87819 1.21522 1.79171 1.43473 1.21975 0.90877 0.97202 0.89017 1.23137 0.97421 1.03538 0.98903 1.87294 1.08318 1.77928 1.32953 1.21911 0.89929 1.03106 0.99227 1.18740 1.08981 0.93952 0.98835 1.20757 0.97358 0.98263 0.94016 1.21258 1.04089 0.95834 0.99974 1.18025 0.89617 0.92711 0.91590 1.19893 1.21858 0.97094 1.13657 0.90479 1.26794 0.94307 0.94485 1.02463 1.69870 1.24351 1.12786 1.37606 0.85186 0.79128 0.79053 0.76330 1.18560 1.18960 1.18308 1.21166 1.09530 0.99080 0.96614 1.20693 0.96873 0.93837 0.97574 0.92072 0.91136 0.92018 0.90933 0.91726 0.92611 0.93464 0.92605 0.92785 0.92249 0.92453 0.89324 0.89090 0.89695 0.89154 0.87622 0.88055 0.89970 0.88237 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 71.98 0.66 -0.76 16 2 C -0.10 -1.34 3.16 -10.79 -0.03 -1.37 16 3 C -0.14 -2.05 9.09 71.98 0.65 -1.40 16 4 C 0.06 1.01 5.32 71.98 0.38 1.39 16 5 O -0.40 -8.75 9.88 -148.98 -1.47 -10.22 16 6 C 0.09 1.92 5.95 71.98 0.43 2.35 16 7 C -0.08 -1.98 6.31 71.98 0.45 -1.52 16 8 S -0.29 -9.32 21.72 -56.49 -1.23 -10.55 16 9 C 0.01 0.17 6.06 71.24 0.43 0.60 16 10 C -0.20 -8.54 5.16 -19.67 -0.10 -8.64 16 11 C -0.08 -3.92 9.67 22.22 0.21 -3.70 16 12 C -0.19 -10.23 8.70 22.73 0.20 -10.03 16 13 C 0.08 4.57 5.57 -21.29 -0.12 4.46 16 14 C -0.50 -26.94 9.05 23.46 0.21 -26.73 16 15 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 16 C 0.04 1.77 5.14 85.26 0.44 2.21 16 17 N -0.82 -42.91 10.97 21.83 0.24 -42.67 16 18 Si 0.98 38.11 29.59 68.60 2.03 40.14 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 20 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.24 -12.12 9.80 22.73 0.22 -11.89 16 23 C -0.07 -3.07 9.67 22.22 0.21 -2.85 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.05 0.82 7.82 -2.39 -0.02 0.81 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.08 2.60 8.08 -2.39 -0.02 2.58 16 38 H 0.09 2.66 8.08 -2.39 -0.02 2.64 16 39 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 40 H 0.10 5.64 6.18 -2.91 -0.02 5.62 16 41 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 42 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -58.80 369.55 4.78 -54.02 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.95 Total: 27.18 kcal Atomic # 6 Polarization: -62.15 SS G_CDS: 4.26 Total: -57.89 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.24 Total: -42.67 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.47 Total: -10.22 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.23 Total: -10.55 kcal Total: -58.80 4.78 -54.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409872449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.606 kcal (2) G-P(sol) polarization free energy of solvation -58.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds