Wall clock time and date at job start Tue Mar 31 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99664 * 2 1 4 4 C 1.38618 * 120.01923 * 0.27293 * 3 2 1 5 5 C 1.38789 * 119.87260 * 180.22897 * 4 3 2 6 6 N 1.39670 * 120.04599 * 179.79209 * 5 4 3 7 7 C 1.46499 * 119.99908 * 179.72787 * 6 5 4 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99500 * 8 7 6 10 10 C 1.52996 * 109.47328 * 59.99969 * 8 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00025 * 15 13 11 18 18 H 1.48498 * 109.46942 * 239.99938 * 15 13 11 19 19 C 1.38972 * 119.90812 * 359.52172 * 5 4 3 20 20 C 1.38117 * 120.03185 * 0.22516 * 19 5 4 21 21 C 1.38206 * 120.13150 * 0.02562 * 20 19 5 22 22 N 1.48003 * 119.95650 * 179.97438 * 21 20 19 23 23 O 1.21802 * 120.00033 * 0.02562 * 22 21 20 24 24 O 1.21800 * 120.00418 * 179.97438 * 22 21 20 25 25 H 1.09002 * 109.47311 * 60.00579 * 1 2 3 26 26 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47419 * 299.99931 * 1 2 3 28 28 H 1.08003 * 120.06321 * 0.02697 * 4 3 2 29 29 H 0.97000 * 119.99671 * 359.72157 * 6 5 4 30 30 H 1.09002 * 109.47391 * 59.99812 * 7 6 5 31 31 H 1.09001 * 109.46813 * 299.99868 * 7 6 5 32 32 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 33 33 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 35 35 H 1.08992 * 109.47554 * 59.99639 * 10 8 7 36 36 H 1.09004 * 109.47108 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.46870 * 299.99783 * 10 8 7 38 38 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 39 39 H 1.07995 * 119.98500 * 180.25486 * 19 5 4 40 40 H 1.08008 * 119.93016 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3737 0.0057 5 6 1.9244 3.6087 0.0009 6 7 1.1676 4.7826 0.0022 7 6 1.8370 6.0857 0.0032 8 6 0.7868 7.1984 0.0052 9 6 -0.0887 7.0758 -1.2436 10 6 -0.0868 7.0729 1.2549 11 6 1.4755 8.5389 0.0055 12 1 2.5542 8.5919 0.0048 13 6 0.7283 9.6977 0.0067 14 7 -0.5852 9.6333 0.0071 15 14 1.5819 11.3593 0.0079 16 1 3.0534 11.1599 0.0066 17 1 1.1849 12.1205 -1.2039 18 1 1.1857 12.1185 1.2211 19 6 3.3125 3.6758 0.0004 20 6 4.0607 2.5148 0.0000 21 6 3.4317 1.2841 -0.0004 22 7 4.2372 0.0425 -0.0014 23 8 5.4536 0.1057 -0.0014 24 8 3.6838 -1.0425 -0.0013 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2126 2.3186 0.0106 29 1 0.1987 4.7350 0.0025 30 1 2.4598 6.1749 -0.8870 31 1 2.4603 6.1732 0.8930 32 1 -0.5867 6.1062 -1.2443 33 1 -0.8365 7.8687 -1.2424 34 1 0.5338 7.1651 -2.1339 35 1 0.5368 7.1603 2.1445 36 1 -0.8346 7.8660 1.2566 37 1 -0.5848 6.1034 1.2542 38 1 -1.1109 10.4485 0.0076 39 1 3.8065 4.6361 0.0008 40 1 5.1394 2.5688 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413415146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:01 Heat of formation + Delta-G solvation = -22.542504 kcal Electronic energy + Delta-G solvation = -23564.946401 eV Core-core repulsion = 19962.242440 eV Total energy + Delta-G solvation = -3602.703961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.80889 -40.28072 -38.52642 -36.81475 -36.05613 -34.29886 -31.71468 -30.55685 -29.83707 -27.69687 -26.07050 -25.95599 -25.56583 -24.52844 -22.57372 -21.71433 -19.27876 -19.05851 -18.40004 -17.83269 -17.18957 -16.92496 -16.18673 -15.94794 -15.59005 -14.94608 -14.70690 -14.44039 -14.26944 -13.70440 -13.27181 -12.96350 -12.92540 -12.47857 -11.94043 -11.92444 -11.71139 -11.42183 -11.34876 -11.16683 -11.06266 -10.82069 -10.76029 -10.71703 -10.67367 -10.36727 -10.22739 -9.78220 -9.60748 -9.01638 -8.78121 -8.57779 -7.70413 -6.20963 -4.32655 0.32192 1.12107 1.73785 1.84941 2.85285 3.14686 3.24242 3.26197 3.43036 3.44712 4.24144 4.42833 4.69458 4.90013 4.92213 4.92468 5.05349 5.06522 5.26107 5.30601 5.53877 5.75860 5.87237 5.91639 5.99814 6.19209 6.23285 6.47491 6.58830 6.65638 6.67954 6.75802 6.96302 7.04605 7.24941 7.32218 7.49260 7.64646 7.78410 7.92948 8.09027 8.16601 8.67682 9.34786 10.80478 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.003274 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.188850 B = 8548.930962 C = 9341.749778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.285 6.285 3 C 0.241 3.759 4 C -0.308 4.308 5 C 0.309 3.691 6 N -0.702 5.702 7 C 0.121 3.879 8 C 0.058 3.942 9 C -0.132 4.132 10 C -0.132 4.132 11 C -0.512 4.512 12 H 0.059 0.941 13 C 0.068 3.932 14 N -0.884 5.884 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.228 4.228 20 C 0.024 3.976 21 C -0.153 4.153 22 N 0.055 4.945 23 O -0.207 6.207 24 O -0.168 6.168 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.144 0.856 29 H 0.406 0.594 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.005 0.995 33 H 0.087 0.913 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.005 0.995 38 H 0.261 0.739 39 H 0.147 0.853 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 -11.980 -0.009 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.195 6.195 3 C 0.191 3.809 4 C -0.332 4.332 5 C 0.193 3.807 6 N -0.322 5.322 7 C -0.001 4.001 8 C 0.057 3.943 9 C -0.190 4.190 10 C -0.190 4.190 11 C -0.550 4.550 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.522 5.522 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.251 4.251 20 C 0.004 3.996 21 C -0.242 4.242 22 N 0.565 4.435 23 O -0.411 6.411 24 O -0.383 6.383 25 H 0.079 0.921 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.162 0.838 29 H 0.243 0.757 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.106 0.894 37 H 0.024 0.976 38 H 0.072 0.928 39 H 0.165 0.835 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.092 -11.218 -0.009 11.218 hybrid contribution -0.090 0.818 -0.003 0.823 sum -0.182 -10.399 -0.012 10.401 Atomic orbital electron populations 1.23239 0.77642 1.04629 1.01894 1.86387 1.21960 1.24909 1.86237 1.18223 0.89063 0.85408 0.88256 1.20491 1.00361 0.89778 1.22614 1.18000 0.91280 0.86620 0.84793 1.45726 1.09190 1.03784 1.73528 1.22044 0.97206 0.80503 1.00379 1.18344 0.91314 0.91628 0.92993 1.21850 1.00871 0.98781 0.97496 1.21847 1.00868 0.98778 0.97499 1.20959 0.92922 0.89484 1.51635 0.92287 1.24884 0.94845 0.99187 0.94496 1.69794 1.04364 1.27992 1.50014 0.86494 0.79846 0.83736 0.77698 1.19698 1.20950 1.20944 1.20641 0.91646 0.98818 1.13971 1.20544 1.01292 0.88449 0.89349 1.20062 0.87746 0.85148 1.31260 1.43237 1.00912 1.02487 0.96884 1.94476 0.96191 1.94104 1.56345 1.94527 1.74216 1.15606 1.53925 0.92071 0.87531 0.92063 0.83845 0.75698 0.92206 0.92210 0.97593 0.89409 0.95295 0.95293 0.89422 0.97582 0.92848 0.83540 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -3.70 8.50 -41.59 -0.35 -4.05 16 3 C 0.24 3.29 6.67 -39.24 -0.26 3.03 16 4 C -0.31 -3.76 8.88 -39.24 -0.35 -4.11 16 5 C 0.31 4.11 6.65 -83.81 -0.56 3.55 16 6 N -0.70 -9.97 5.13 -58.65 -0.30 -10.28 16 7 C 0.12 2.03 3.74 -4.04 -0.02 2.02 16 8 C 0.06 1.18 0.50 -155.66 -0.08 1.10 16 9 C -0.13 -2.69 8.08 37.16 0.30 -2.39 16 10 C -0.13 -2.69 8.08 37.16 0.30 -2.39 16 11 C -0.51 -12.10 8.01 -34.44 -0.28 -12.37 16 12 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 13 C 0.07 1.66 5.15 -17.82 -0.09 1.56 16 14 N -0.88 -22.10 9.35 55.43 0.52 -21.58 16 15 Si 0.89 19.37 29.54 -169.99 -5.02 14.35 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 C -0.23 -2.93 9.31 -39.35 -0.37 -3.30 16 20 C 0.02 0.31 9.54 -39.64 -0.38 -0.07 16 21 C -0.15 -2.28 6.87 -79.77 -0.55 -2.83 16 22 N 0.05 0.92 4.45 34.05 0.15 1.07 16 23 O -0.21 -3.52 18.44 -29.46 -0.54 -4.07 16 24 O -0.17 -2.95 17.23 -36.50 -0.63 -3.58 16 25 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 26 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 28 H 0.14 1.43 6.30 -52.48 -0.33 1.10 16 29 H 0.41 5.56 6.17 -40.82 -0.25 5.31 16 30 H 0.06 1.01 7.95 -51.93 -0.41 0.59 16 31 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 32 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 33 H 0.09 2.03 6.07 -51.93 -0.32 1.72 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 2.03 6.07 -51.93 -0.32 1.72 16 37 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 38 H 0.26 6.34 8.31 -40.82 -0.34 6.00 16 39 H 0.15 1.76 6.73 -52.49 -0.35 1.41 16 40 H 0.15 1.72 7.60 -52.48 -0.40 1.33 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -26.75 329.61 -7.65 -34.39 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.11 Total: 3.80 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -1.33 Total: -15.03 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.37 Total: -30.79 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.53 Total: -11.70 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.75 -7.65 -34.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.852 kcal (2) G-P(sol) polarization free energy of solvation -26.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds