Wall clock time and date at job start Tue Mar 31 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99664 * 2 1 4 4 C 1.38618 * 120.01923 * 0.27293 * 3 2 1 5 5 C 1.38789 * 119.87260 * 180.22897 * 4 3 2 6 6 N 1.39670 * 120.04599 * 179.79209 * 5 4 3 7 7 C 1.46499 * 119.99908 * 179.72787 * 6 5 4 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99500 * 8 7 6 10 10 C 1.52996 * 109.47328 * 59.99969 * 8 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00025 * 15 13 11 18 18 H 1.48498 * 109.46942 * 239.99938 * 15 13 11 19 19 C 1.38972 * 119.90812 * 359.52172 * 5 4 3 20 20 C 1.38117 * 120.03185 * 0.22516 * 19 5 4 21 21 C 1.38206 * 120.13150 * 0.02562 * 20 19 5 22 22 N 1.48003 * 119.95650 * 179.97438 * 21 20 19 23 23 O 1.21802 * 120.00033 * 0.02562 * 22 21 20 24 24 O 1.21800 * 120.00418 * 179.97438 * 22 21 20 25 25 H 1.09002 * 109.47311 * 60.00579 * 1 2 3 26 26 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47419 * 299.99931 * 1 2 3 28 28 H 1.08003 * 120.06321 * 0.02697 * 4 3 2 29 29 H 0.97000 * 119.99671 * 359.72157 * 6 5 4 30 30 H 1.09002 * 109.47391 * 59.99812 * 7 6 5 31 31 H 1.09001 * 109.46813 * 299.99868 * 7 6 5 32 32 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 33 33 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 35 35 H 1.08992 * 109.47554 * 59.99639 * 10 8 7 36 36 H 1.09004 * 109.47108 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.46870 * 299.99783 * 10 8 7 38 38 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 39 39 H 1.07995 * 119.98500 * 180.25486 * 19 5 4 40 40 H 1.08008 * 119.93016 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3737 0.0057 5 6 1.9244 3.6087 0.0009 6 7 1.1676 4.7826 0.0022 7 6 1.8370 6.0857 0.0032 8 6 0.7868 7.1984 0.0052 9 6 -0.0887 7.0758 -1.2436 10 6 -0.0868 7.0729 1.2549 11 6 1.4755 8.5389 0.0055 12 1 2.5542 8.5919 0.0048 13 6 0.7283 9.6977 0.0067 14 7 -0.5852 9.6333 0.0071 15 14 1.5819 11.3593 0.0079 16 1 3.0534 11.1599 0.0066 17 1 1.1849 12.1205 -1.2039 18 1 1.1857 12.1185 1.2211 19 6 3.3125 3.6758 0.0004 20 6 4.0607 2.5148 0.0000 21 6 3.4317 1.2841 -0.0004 22 7 4.2372 0.0425 -0.0014 23 8 5.4536 0.1057 -0.0014 24 8 3.6838 -1.0425 -0.0013 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2126 2.3186 0.0106 29 1 0.1987 4.7350 0.0025 30 1 2.4598 6.1749 -0.8870 31 1 2.4603 6.1732 0.8930 32 1 -0.5867 6.1062 -1.2443 33 1 -0.8365 7.8687 -1.2424 34 1 0.5338 7.1651 -2.1339 35 1 0.5368 7.1603 2.1445 36 1 -0.8346 7.8660 1.2566 37 1 -0.5848 6.1034 1.2542 38 1 -1.1109 10.4485 0.0076 39 1 3.8065 4.6361 0.0008 40 1 5.1394 2.5688 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413415146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:00 Heat of formation + Delta-G solvation = -35.269875 kcal Electronic energy + Delta-G solvation = -23565.498301 eV Core-core repulsion = 19962.242440 eV Total energy + Delta-G solvation = -3603.255861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.01068 -41.31263 -39.61599 -38.14382 -37.32274 -35.64940 -33.30423 -31.57125 -31.05446 -28.47799 -27.58499 -27.49844 -27.08700 -25.86063 -23.58506 -22.84989 -20.59972 -20.36891 -19.62732 -18.99133 -18.41182 -18.08649 -17.67636 -16.84665 -16.80468 -16.44943 -15.76272 -15.58543 -15.51803 -14.87225 -14.63375 -14.24601 -14.06211 -13.83553 -13.29947 -13.15845 -12.85151 -12.77260 -12.55747 -12.53299 -12.46074 -12.43504 -12.16393 -12.13183 -12.07027 -11.93572 -11.58135 -11.20677 -11.20313 -10.70455 -10.39649 -9.74470 -8.81822 -8.03551 -6.19114 -0.87066 0.14112 0.57075 0.69629 1.41531 1.47725 1.54489 1.98696 2.27339 2.42004 2.48584 3.21869 3.46044 3.76908 3.94674 3.99217 4.17931 4.30107 4.36512 4.45297 4.51350 4.55816 4.69443 4.74007 4.85604 4.96569 4.96986 5.03329 5.09190 5.18216 5.24019 5.44091 5.50234 5.65008 5.67779 5.97878 6.08015 6.13193 6.20867 6.40888 6.59255 6.79495 6.88345 7.49924 8.95247 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.003274 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.188850 B = 8548.930962 C = 9341.749778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.305 6.305 3 C 0.237 3.763 4 C -0.296 4.296 5 C 0.307 3.693 6 N -0.699 5.699 7 C 0.136 3.864 8 C 0.051 3.949 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.027 3.973 14 N -0.902 5.902 15 Si 0.941 3.059 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.287 1.287 19 C -0.227 4.227 20 C 0.027 3.973 21 C -0.170 4.170 22 N 0.056 4.944 23 O -0.219 6.219 24 O -0.195 6.195 25 H 0.074 0.926 26 H 0.125 0.875 27 H 0.074 0.926 28 H 0.170 0.830 29 H 0.410 0.590 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.056 0.944 37 H 0.033 0.967 38 H 0.258 0.742 39 H 0.156 0.844 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.052 -12.495 -0.007 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.215 6.215 3 C 0.186 3.814 4 C -0.320 4.320 5 C 0.192 3.808 6 N -0.321 5.321 7 C 0.013 3.987 8 C 0.050 3.950 9 C -0.181 4.181 10 C -0.181 4.181 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.173 4.173 14 N -0.541 5.541 15 Si 0.769 3.231 16 H -0.193 1.193 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.250 4.250 20 C 0.007 3.993 21 C -0.260 4.260 22 N 0.560 4.440 23 O -0.422 6.422 24 O -0.404 6.404 25 H 0.093 0.907 26 H 0.143 0.857 27 H 0.093 0.907 28 H 0.187 0.813 29 H 0.248 0.752 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.174 0.826 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.395 -11.794 -0.007 11.800 hybrid contribution -0.049 0.968 -0.004 0.970 sum -0.444 -10.825 -0.011 10.835 Atomic orbital electron populations 1.23594 0.75221 1.06432 1.03153 1.86383 1.24515 1.24752 1.85853 1.18352 0.88805 0.86214 0.88012 1.20658 1.01540 0.88657 1.21179 1.18091 0.91396 0.86542 0.84734 1.45444 1.09271 1.03078 1.74297 1.21646 0.95955 0.80538 1.00548 1.18340 0.92062 0.91651 0.92939 1.21694 1.00062 0.99179 0.97187 1.21692 1.00058 0.99175 0.97191 1.21339 0.92964 0.91208 1.50625 0.92680 1.25451 0.95350 1.01597 0.94921 1.69922 1.05053 1.28115 1.50969 0.85763 0.79185 0.81054 0.77127 1.19339 1.21319 1.21309 1.20772 0.91688 0.99054 1.13467 1.20696 1.02085 0.87802 0.88764 1.20385 0.88400 0.84622 1.32574 1.43523 1.00957 1.03032 0.96504 1.94449 0.96796 1.94282 1.56679 1.94509 1.74191 1.16541 1.55175 0.90734 0.85697 0.90720 0.81282 0.75188 0.92115 0.92118 0.94801 0.92446 0.95912 0.95904 0.92461 0.94789 0.93271 0.82644 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.30 -7.35 8.50 -71.24 -0.61 -7.95 16 3 C 0.24 5.99 6.67 22.49 0.15 6.14 16 4 C -0.30 -6.29 8.88 22.49 0.20 -6.09 16 5 C 0.31 7.21 6.65 38.20 0.25 7.47 16 6 N -0.70 -17.61 5.13 -339.47 -1.74 -19.35 16 7 C 0.14 4.25 3.74 86.38 0.32 4.58 16 8 C 0.05 1.99 0.50 -52.93 -0.03 1.96 16 9 C -0.12 -4.84 8.08 71.98 0.58 -4.26 16 10 C -0.12 -4.84 8.08 71.98 0.58 -4.26 16 11 C -0.52 -24.33 8.01 25.60 0.21 -24.13 16 12 H 0.05 2.55 7.74 -2.91 -0.02 2.52 16 13 C 0.03 1.29 5.15 84.66 0.44 1.72 16 14 N -0.90 -45.35 9.35 21.45 0.20 -45.15 16 15 Si 0.94 39.60 29.54 68.60 2.03 41.63 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 19 C -0.23 -5.26 9.31 22.42 0.21 -5.05 16 20 C 0.03 0.65 9.54 22.23 0.21 0.86 16 21 C -0.17 -4.83 6.87 36.50 0.25 -4.58 16 22 N 0.06 1.85 4.45 -46.19 -0.21 1.64 16 23 O -0.22 -7.40 18.44 18.88 0.35 -7.05 16 24 O -0.19 -6.84 17.23 25.62 0.44 -6.40 16 25 H 0.07 0.81 7.67 -2.39 -0.02 0.80 16 26 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 0.81 7.65 -2.39 -0.02 0.80 16 28 H 0.17 2.65 6.30 -2.91 -0.02 2.63 16 29 H 0.41 9.70 6.17 -92.71 -0.57 9.12 16 30 H 0.06 1.89 7.95 -2.39 -0.02 1.87 16 31 H 0.06 1.89 7.95 -2.39 -0.02 1.87 16 32 H 0.03 1.10 6.86 -2.39 -0.02 1.08 16 33 H 0.06 2.63 6.07 -2.39 -0.01 2.62 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 2.62 6.07 -2.38 -0.01 2.61 16 37 H 0.03 1.10 6.86 -2.39 -0.02 1.09 16 38 H 0.26 12.65 8.31 -92.71 -0.77 11.87 16 39 H 0.16 3.33 6.73 -2.91 -0.02 3.31 16 40 H 0.17 3.47 7.60 -2.91 -0.02 3.45 16 Total: -1.00 -57.16 329.61 5.45 -51.71 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.50 Total: 15.34 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 4.49 Total: -24.40 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -1.75 Total: -62.86 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.18 Total: -21.41 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -57.16 5.45 -51.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.437 kcal (2) G-P(sol) polarization free energy of solvation -57.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds