Wall clock time and date at job start Tue Mar 31 2020 07:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99908 * 2 1 4 4 C 1.38754 * 120.05542 * 359.97263 * 3 2 1 5 5 C 1.38124 * 119.94671 * 180.02562 * 4 3 2 6 6 N 1.48001 * 119.97541 * 180.02562 * 5 4 3 7 7 O 1.21800 * 119.99969 * 359.97438 * 6 5 4 8 8 O 1.21798 * 120.00089 * 180.02562 * 6 5 4 9 9 C 1.38296 * 120.05291 * 0.02562 * 5 4 3 10 10 C 1.38247 * 120.11174 * 359.72980 * 9 5 4 11 11 C 1.38167 * 120.05049 * 0.54593 * 10 9 5 12 12 C 1.50699 * 120.02387 * 179.72525 * 11 10 9 13 13 N 1.46906 * 109.47140 * 259.72693 * 12 11 10 14 14 C 1.46900 * 110.99728 * 66.04805 * 13 12 11 15 15 C 1.46905 * 111.00051 * 189.99841 * 13 12 11 16 16 H 1.09002 * 109.46483 * 55.00005 * 15 13 12 17 17 C 1.52995 * 109.47200 * 295.00351 * 15 13 12 18 18 C 1.50697 * 109.46827 * 175.00101 * 15 13 12 19 19 H 1.08000 * 120.00189 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99554 * 180.02562 * 18 15 13 21 21 N 1.31516 * 120.00095 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99601 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47413 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47023 * 120.00059 * 22 20 18 25 25 H 1.48495 * 109.47178 * 239.99631 * 22 20 18 26 26 H 1.09006 * 109.47212 * 300.00189 * 1 2 3 27 27 H 1.09003 * 109.47122 * 59.99984 * 1 2 3 28 28 H 1.08998 * 109.47262 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.03298 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.94197 * 180.02562 * 9 5 4 31 31 H 1.07990 * 119.97200 * 180.27530 * 10 9 5 32 32 H 1.09004 * 109.47103 * 139.72794 * 12 11 10 33 33 H 1.09000 * 109.47247 * 19.72672 * 12 11 10 34 34 H 1.08996 * 109.47030 * 59.99921 * 14 13 12 35 35 H 1.08999 * 109.46702 * 180.02562 * 14 13 12 36 36 H 1.08996 * 109.46890 * 299.99929 * 14 13 12 37 37 H 1.09001 * 109.47209 * 180.02562 * 17 15 13 38 38 H 1.09002 * 109.46927 * 300.00025 * 17 15 13 39 39 H 1.08999 * 109.47343 * 59.99642 * 17 15 13 40 40 H 0.96999 * 119.99537 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0006 5 6 1.9207 3.6048 -0.0011 6 7 1.1165 4.8472 -0.0011 7 8 -0.1000 4.7853 -0.0012 8 8 1.6710 5.9317 -0.0021 9 6 3.3019 3.6759 -0.0016 10 6 4.0560 2.5172 0.0041 11 6 3.4310 1.2850 -0.0011 12 6 4.2537 0.0223 -0.0012 13 7 4.3190 -0.5195 -1.3651 14 6 5.0628 0.3822 -2.2547 15 6 4.9067 -1.8659 -1.3692 16 1 4.3481 -2.5081 -0.6882 17 6 6.3654 -1.7870 -0.9145 18 6 4.8449 -2.4367 -2.7625 19 1 4.4127 -1.8572 -3.5648 20 6 5.3402 -3.6989 -3.0129 21 7 5.8660 -4.4048 -2.0358 22 14 5.2630 -4.4067 -4.7399 23 1 4.6290 -3.4205 -5.6512 24 1 6.6381 -4.7057 -5.2143 25 1 4.4612 -5.6566 -4.7272 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2127 2.3204 -0.0006 30 1 3.7921 4.6382 -0.0016 31 1 5.1343 2.5753 0.0082 32 1 3.7927 -0.7118 0.6597 33 1 5.2613 0.2451 0.3498 34 1 6.0784 0.5068 -1.8792 35 1 5.0955 -0.0427 -3.2580 36 1 4.5659 1.3518 -2.2872 37 1 6.8016 -2.7859 -0.9180 38 1 6.9239 -1.1446 -1.5954 39 1 6.4101 -1.3740 0.0932 40 1 6.2148 -5.2926 -2.2121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430217226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:40 Heat of formation + Delta-G solvation = -2.735465 kcal Electronic energy + Delta-G solvation = -23934.351758 eV Core-core repulsion = 20332.506695 eV Total energy + Delta-G solvation = -3601.845063 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.24661 -40.51567 -37.92368 -37.07636 -36.61440 -33.40019 -31.99293 -30.65657 -28.86893 -27.89883 -27.44518 -25.65428 -25.23067 -23.45253 -22.68414 -21.57067 -19.71281 -19.32131 -18.77319 -17.59754 -16.97827 -16.42874 -16.35332 -15.96801 -15.67099 -15.13536 -14.48888 -14.31704 -13.99403 -13.54493 -13.40141 -12.97656 -12.68234 -12.17276 -12.13240 -11.78254 -11.60014 -11.50555 -11.43324 -11.22297 -11.21529 -11.15734 -11.09325 -10.86234 -10.72345 -10.52375 -10.10621 -9.93434 -9.49536 -8.96018 -8.56622 -8.45535 -7.28620 -6.07684 -4.11328 -0.23196 0.92229 1.33059 1.33941 3.07477 3.21107 3.25388 3.33845 3.38069 4.27878 4.35647 4.42006 4.53680 4.68598 4.92525 5.04649 5.09826 5.11869 5.21358 5.25365 5.43140 5.50752 5.57606 5.78273 5.93085 6.05314 6.12371 6.18211 6.28918 6.36246 6.57202 6.72146 6.79328 7.01273 7.12280 7.37013 7.58889 7.62070 7.74729 8.01748 8.27751 8.48451 8.94296 9.53874 10.99480 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.003737 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.213119 B = 7490.018162 C = 7818.957012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.280 6.280 3 C 0.156 3.844 4 C -0.158 4.158 5 C -0.016 4.016 6 N 0.033 4.967 7 O -0.169 6.169 8 O -0.164 6.164 9 C -0.091 4.091 10 C -0.081 4.081 11 C -0.039 4.039 12 C 0.089 3.911 13 N -0.522 5.522 14 C 0.030 3.970 15 C 0.212 3.788 16 H 0.042 0.958 17 C -0.174 4.174 18 C -0.499 4.499 19 H 0.063 0.937 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.089 0.911 38 H 0.031 0.969 39 H 0.007 0.993 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 11.744 6.056 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.192 6.192 3 C 0.108 3.892 4 C -0.178 4.178 5 C -0.099 4.099 6 N 0.551 4.449 7 O -0.383 6.383 8 O -0.379 6.379 9 C -0.110 4.110 10 C -0.101 4.101 11 C -0.040 4.040 12 C -0.039 4.039 13 N -0.246 5.246 14 C -0.118 4.118 15 C 0.107 3.893 16 H 0.060 0.940 17 C -0.233 4.233 18 C -0.538 4.538 19 H 0.081 0.919 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.210 1.210 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.126 0.874 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.050 0.950 39 H 0.026 0.974 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.022 10.695 5.900 13.619 hybrid contribution 0.348 0.109 -0.629 0.728 sum -5.674 10.805 5.271 13.293 Atomic orbital electron populations 1.23204 0.78175 1.04844 1.01205 1.86353 1.21248 1.24299 1.87269 1.18541 0.91531 0.84035 0.95133 1.20965 1.02068 0.89886 1.04867 1.20691 0.91429 0.83602 1.14211 1.43636 1.01330 1.02782 0.97192 1.94516 0.95988 1.94098 1.53747 1.94518 1.74235 1.15703 1.53472 1.20891 0.90357 1.01018 0.98782 1.20989 1.00819 0.89613 0.98641 1.19989 0.91128 0.96920 0.95992 1.21008 0.96359 0.92007 0.94480 1.62422 1.53545 1.04251 1.04370 1.22303 0.94941 0.95326 0.99272 1.19338 0.89401 0.82888 0.97698 0.94035 1.22427 1.01695 1.03508 0.95657 1.21123 1.38466 1.00232 0.93943 0.91899 1.24914 0.95318 0.96871 0.97107 1.69888 1.40743 1.11467 1.31214 0.86475 0.77573 0.79044 0.84519 1.19777 1.21167 1.21031 0.92692 0.92324 0.87400 0.82794 0.83105 0.83147 0.89475 0.93863 0.96285 0.90436 0.94205 0.89224 0.95042 0.97371 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.20 16 2 O -0.28 -4.00 9.73 -19.43 -0.19 -4.19 16 3 C 0.16 2.14 6.66 -39.22 -0.26 1.88 16 4 C -0.16 -1.98 8.54 -39.43 -0.34 -2.32 16 5 C -0.02 -0.21 6.85 -79.98 -0.55 -0.76 16 6 N 0.03 0.47 4.45 33.95 0.15 0.62 16 7 O -0.17 -2.48 18.45 -29.46 -0.54 -3.03 16 8 O -0.16 -2.37 18.45 -29.46 -0.54 -2.91 16 9 C -0.09 -1.04 9.55 -39.56 -0.38 -1.41 16 10 C -0.08 -0.94 8.75 -39.60 -0.35 -1.28 16 11 C -0.04 -0.54 4.58 -104.48 -0.48 -1.02 16 12 C 0.09 1.46 4.20 -4.97 -0.02 1.44 16 13 N -0.52 -10.35 4.73 -237.73 -1.13 -11.47 16 14 C 0.03 0.55 8.51 60.06 0.51 1.06 16 15 C 0.21 5.02 2.34 -68.87 -0.16 4.86 16 16 H 0.04 1.09 8.03 -51.93 -0.42 0.67 16 17 C -0.17 -3.92 8.28 37.15 0.31 -3.62 16 18 C -0.50 -13.06 7.89 -34.44 -0.27 -13.33 16 19 H 0.06 1.67 6.77 -52.49 -0.36 1.31 16 20 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 21 N -0.89 -24.56 11.32 55.43 0.63 -23.94 16 22 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 28 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.15 1.69 5.85 -52.49 -0.31 1.38 16 30 H 0.15 1.44 7.61 -52.49 -0.40 1.04 16 31 H 0.15 1.42 8.03 -52.49 -0.42 0.99 16 32 H 0.09 1.48 7.71 -51.93 -0.40 1.08 16 33 H 0.04 0.67 6.80 -51.93 -0.35 0.32 16 34 H 0.02 0.33 6.51 -51.93 -0.34 -0.01 16 35 H 0.08 1.56 6.41 -51.93 -0.33 1.22 16 36 H 0.04 0.64 6.66 -51.93 -0.35 0.29 16 37 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 38 H 0.03 0.69 6.47 -51.93 -0.34 0.35 16 39 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -28.92 330.70 -7.77 -36.69 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.03 Total: -0.67 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.09 Total: -11.83 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.35 Total: -34.79 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.28 Total: -10.13 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.92 -7.77 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430217226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.958 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds