Wall clock time and date at job start Tue Mar 31 2020 07:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99908 * 2 1 4 4 C 1.38754 * 120.05542 * 359.97263 * 3 2 1 5 5 C 1.38124 * 119.94671 * 180.02562 * 4 3 2 6 6 N 1.48001 * 119.97541 * 180.02562 * 5 4 3 7 7 O 1.21800 * 119.99969 * 359.97438 * 6 5 4 8 8 O 1.21798 * 120.00089 * 180.02562 * 6 5 4 9 9 C 1.38296 * 120.05291 * 0.02562 * 5 4 3 10 10 C 1.38247 * 120.11174 * 359.72980 * 9 5 4 11 11 C 1.38167 * 120.05049 * 0.54593 * 10 9 5 12 12 C 1.50699 * 120.02387 * 179.72525 * 11 10 9 13 13 N 1.46906 * 109.47140 * 259.72693 * 12 11 10 14 14 C 1.46900 * 110.99728 * 66.04805 * 13 12 11 15 15 C 1.46905 * 111.00051 * 189.99841 * 13 12 11 16 16 H 1.09002 * 109.46483 * 55.00005 * 15 13 12 17 17 C 1.52995 * 109.47200 * 295.00351 * 15 13 12 18 18 C 1.50697 * 109.46827 * 175.00101 * 15 13 12 19 19 H 1.08000 * 120.00189 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99554 * 180.02562 * 18 15 13 21 21 N 1.31516 * 120.00095 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99601 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47413 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47023 * 120.00059 * 22 20 18 25 25 H 1.48495 * 109.47178 * 239.99631 * 22 20 18 26 26 H 1.09006 * 109.47212 * 300.00189 * 1 2 3 27 27 H 1.09003 * 109.47122 * 59.99984 * 1 2 3 28 28 H 1.08998 * 109.47262 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.03298 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.94197 * 180.02562 * 9 5 4 31 31 H 1.07990 * 119.97200 * 180.27530 * 10 9 5 32 32 H 1.09004 * 109.47103 * 139.72794 * 12 11 10 33 33 H 1.09000 * 109.47247 * 19.72672 * 12 11 10 34 34 H 1.08996 * 109.47030 * 59.99921 * 14 13 12 35 35 H 1.08999 * 109.46702 * 180.02562 * 14 13 12 36 36 H 1.08996 * 109.46890 * 299.99929 * 14 13 12 37 37 H 1.09001 * 109.47209 * 180.02562 * 17 15 13 38 38 H 1.09002 * 109.46927 * 300.00025 * 17 15 13 39 39 H 1.08999 * 109.47343 * 59.99642 * 17 15 13 40 40 H 0.96999 * 119.99537 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0006 5 6 1.9207 3.6048 -0.0011 6 7 1.1165 4.8472 -0.0011 7 8 -0.1000 4.7853 -0.0012 8 8 1.6710 5.9317 -0.0021 9 6 3.3019 3.6759 -0.0016 10 6 4.0560 2.5172 0.0041 11 6 3.4310 1.2850 -0.0011 12 6 4.2537 0.0223 -0.0012 13 7 4.3190 -0.5195 -1.3651 14 6 5.0628 0.3822 -2.2547 15 6 4.9067 -1.8659 -1.3692 16 1 4.3481 -2.5081 -0.6882 17 6 6.3654 -1.7870 -0.9145 18 6 4.8449 -2.4367 -2.7625 19 1 4.4127 -1.8572 -3.5648 20 6 5.3402 -3.6989 -3.0129 21 7 5.8660 -4.4048 -2.0358 22 14 5.2630 -4.4067 -4.7399 23 1 4.6290 -3.4205 -5.6512 24 1 6.6381 -4.7057 -5.2143 25 1 4.4612 -5.6566 -4.7272 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2127 2.3204 -0.0006 30 1 3.7921 4.6382 -0.0016 31 1 5.1343 2.5753 0.0082 32 1 3.7927 -0.7118 0.6597 33 1 5.2613 0.2451 0.3498 34 1 6.0784 0.5068 -1.8792 35 1 5.0955 -0.0427 -3.2580 36 1 4.5659 1.3518 -2.2872 37 1 6.8016 -2.7859 -0.9180 38 1 6.9239 -1.1446 -1.5954 39 1 6.4101 -1.3740 0.0932 40 1 6.2148 -5.2926 -2.2121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430217226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:40 Heat of formation + Delta-G solvation = -19.525122 kcal Electronic energy + Delta-G solvation = -23935.079812 eV Core-core repulsion = 20332.506695 eV Total energy + Delta-G solvation = -3602.573117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.31330 -41.53297 -39.13057 -38.40630 -37.70769 -35.05534 -33.43094 -31.61116 -30.52661 -29.07506 -28.44769 -27.26014 -26.84345 -24.84993 -23.62111 -22.77467 -21.03307 -20.68955 -19.84335 -18.66806 -18.27376 -17.93934 -17.35836 -17.26670 -16.81054 -16.61603 -16.03335 -15.42185 -15.22571 -14.96316 -14.67107 -14.30948 -13.95817 -13.65301 -13.19757 -13.11299 -12.88667 -12.83207 -12.71792 -12.62862 -12.59567 -12.49563 -12.33013 -12.28009 -12.19342 -12.13857 -11.97862 -11.65767 -10.89853 -10.49406 -10.47368 -9.56879 -8.83349 -8.09786 -6.19521 -1.29457 -0.01115 0.27287 0.30044 1.41002 1.44169 1.54512 2.16054 2.23944 2.44266 3.20214 3.33822 3.38801 3.50565 3.60194 3.82503 4.05205 4.16175 4.32984 4.33655 4.39021 4.55827 4.61916 4.68609 4.73486 4.76941 4.80061 4.87438 4.91956 5.07615 5.12020 5.17832 5.21501 5.36411 5.57809 5.73313 5.81310 6.18800 6.21653 6.47731 6.48807 6.73027 6.94070 7.49559 8.96315 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.003737 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.213119 B = 7490.018162 C = 7818.957012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.310 6.310 3 C 0.147 3.853 4 C -0.155 4.155 5 C -0.024 4.024 6 N 0.033 4.967 7 O -0.187 6.187 8 O -0.164 6.164 9 C -0.081 4.081 10 C -0.068 4.068 11 C -0.054 4.054 12 C 0.096 3.904 13 N -0.535 5.535 14 C 0.037 3.963 15 C 0.219 3.781 16 H 0.007 0.993 17 C -0.160 4.160 18 C -0.511 4.511 19 H 0.055 0.945 20 C 0.014 3.986 21 N -0.919 5.919 22 Si 0.954 3.046 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.283 1.283 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.166 0.834 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 13.339 5.906 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.222 6.222 3 C 0.099 3.901 4 C -0.175 4.175 5 C -0.107 4.107 6 N 0.548 4.452 7 O -0.398 6.398 8 O -0.381 6.381 9 C -0.101 4.101 10 C -0.087 4.087 11 C -0.056 4.056 12 C -0.032 4.032 13 N -0.258 5.258 14 C -0.112 4.112 15 C 0.112 3.888 16 H 0.024 0.976 17 C -0.219 4.219 18 C -0.549 4.549 19 H 0.073 0.927 20 C -0.185 4.185 21 N -0.560 5.560 22 Si 0.780 3.220 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.209 1.209 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.183 0.817 30 H 0.192 0.808 31 H 0.195 0.805 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.825 12.304 5.753 14.779 hybrid contribution 0.237 -0.338 -0.534 0.675 sum -5.589 11.967 5.219 14.201 Atomic orbital electron populations 1.23448 0.76313 1.05939 1.02431 1.86315 1.23399 1.25014 1.87461 1.18647 0.91723 0.84224 0.95512 1.21018 1.02674 0.89410 1.04410 1.20887 0.92035 0.83058 1.14757 1.43811 1.01345 1.03099 0.96909 1.94518 0.96421 1.94236 1.54584 1.94505 1.74137 1.16173 1.53249 1.21159 0.89619 1.01987 0.97287 1.21222 1.02061 0.88424 0.96976 1.19901 0.91086 0.96675 0.97923 1.20899 0.97387 0.92766 0.92144 1.62232 1.53563 1.03139 1.06861 1.22239 0.95590 0.95726 0.97596 1.19037 0.89623 0.84629 0.95545 0.97558 1.22214 1.00716 1.01904 0.97070 1.21390 1.38054 1.00477 0.94997 0.92718 1.25612 0.95202 0.97321 1.00344 1.70010 1.41472 1.11670 1.32806 0.85566 0.77559 0.78193 0.80643 1.19440 1.20738 1.20932 0.90788 0.91705 0.86510 0.81699 0.80787 0.80482 0.91000 0.92568 0.95414 0.92824 0.91679 0.92205 0.94647 0.95069 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.31 -8.74 9.73 -92.45 -0.90 -9.64 16 3 C 0.15 3.86 6.66 22.51 0.15 4.01 16 4 C -0.16 -3.63 8.54 22.37 0.19 -3.44 16 5 C -0.02 -0.57 6.85 36.37 0.25 -0.32 16 6 N 0.03 0.86 4.45 -46.51 -0.21 0.65 16 7 O -0.19 -5.23 18.45 18.89 0.35 -4.89 16 8 O -0.16 -4.37 18.45 18.89 0.35 -4.02 16 9 C -0.08 -1.58 9.55 22.29 0.21 -1.36 16 10 C -0.07 -1.33 8.75 22.25 0.19 -1.14 16 11 C -0.05 -1.41 4.58 -19.77 -0.09 -1.50 16 12 C 0.10 3.01 4.20 85.56 0.36 3.37 16 13 N -0.53 -20.89 4.73 -906.03 -4.29 -25.18 16 14 C 0.04 1.28 8.51 127.69 1.09 2.36 16 15 C 0.22 10.46 2.34 44.17 0.10 10.56 16 16 H 0.01 0.35 8.03 -2.39 -0.02 0.33 16 17 C -0.16 -7.19 8.28 71.98 0.60 -6.59 16 18 C -0.51 -27.04 7.89 25.60 0.20 -26.84 16 19 H 0.05 2.93 6.77 -2.91 -0.02 2.91 16 20 C 0.01 0.73 5.30 84.66 0.45 1.18 16 21 N -0.92 -51.35 11.32 21.45 0.24 -51.10 16 22 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H 0.07 1.09 7.66 -2.38 -0.02 1.07 16 27 H 0.06 1.12 7.66 -2.39 -0.02 1.11 16 28 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.17 3.38 5.85 -2.91 -0.02 3.36 16 30 H 0.17 2.58 7.61 -2.91 -0.02 2.56 16 31 H 0.18 2.52 8.03 -2.92 -0.02 2.50 16 32 H 0.07 2.46 7.71 -2.38 -0.02 2.45 16 33 H 0.06 1.61 6.80 -2.39 -0.02 1.59 16 34 H 0.03 0.91 6.51 -2.39 -0.02 0.89 16 35 H 0.05 2.11 6.41 -2.39 -0.02 2.10 16 36 H 0.06 1.91 6.66 -2.39 -0.02 1.90 16 37 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 38 H 0.03 1.52 6.47 -2.39 -0.02 1.50 16 39 H 0.03 1.21 6.75 -2.39 -0.02 1.19 16 40 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -62.31 330.70 3.45 -58.86 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.07 Total: 8.85 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 4.82 Total: -18.34 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -4.25 Total: -75.63 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.20 Total: -18.55 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -62.31 3.45 -58.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430217226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.338 kcal (2) G-P(sol) polarization free energy of solvation -62.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds