Wall clock time and date at job start Tue Mar 31 2020 08:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46909 * 109.46803 * 2 1 4 4 C 1.46892 * 110.99944 * 59.64224 * 3 2 1 5 5 C 1.50696 * 109.47431 * 68.61154 * 4 3 2 6 6 H 1.08003 * 120.00184 * 5.18953 * 5 4 3 7 7 C 1.37881 * 120.00285 * 185.18836 * 5 4 3 8 8 N 1.31518 * 119.99466 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00158 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47108 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47278 * 120.00301 * 9 7 5 12 12 H 1.48501 * 109.46797 * 239.99842 * 9 7 5 13 13 C 1.46894 * 111.00104 * 295.68093 * 3 2 1 14 14 C 1.50693 * 109.47707 * 287.95950 * 13 3 2 15 15 C 1.38166 * 120.03061 * 264.82029 * 14 13 3 16 16 C 1.38240 * 120.05907 * 179.71866 * 15 14 13 17 17 C 1.38284 * 120.11108 * 0.23531 * 16 15 14 18 18 N 1.48012 * 119.97133 * 180.02562 * 17 16 15 19 19 O 1.21795 * 119.99828 * 0.02562 * 18 17 16 20 20 O 1.21806 * 119.99900 * 179.97438 * 18 17 16 21 21 C 1.38123 * 120.05936 * 0.02562 * 17 16 15 22 22 C 1.38713 * 120.02995 * 85.04752 * 14 13 3 23 23 O 1.35902 * 120.05723 * 0.02562 * 22 14 13 24 24 C 1.42904 * 116.99915 * 180.27381 * 23 22 14 25 25 H 1.09000 * 109.47198 * 296.45678 * 1 2 3 26 26 H 1.09005 * 109.47164 * 56.45632 * 1 2 3 27 27 H 1.08997 * 109.46973 * 176.45490 * 1 2 3 28 28 H 1.09001 * 109.46789 * 240.00378 * 2 1 3 29 29 H 1.08997 * 109.47600 * 119.99855 * 2 1 3 30 30 H 1.08998 * 109.47130 * 188.61281 * 4 3 2 31 31 H 1.09008 * 109.47086 * 308.61078 * 4 3 2 32 32 H 0.97001 * 119.99491 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47569 * 167.95565 * 13 3 2 34 34 H 1.09005 * 109.47281 * 47.96006 * 13 3 2 35 35 H 1.08005 * 119.96805 * 0.02562 * 15 14 13 36 36 H 1.08005 * 119.94592 * 180.25119 * 16 15 14 37 37 H 1.07995 * 120.02763 * 179.97438 * 21 17 16 38 38 H 1.08997 * 109.46924 * 299.99847 * 24 23 22 39 39 H 1.08999 * 109.47129 * 60.00477 * 24 23 22 40 40 H 1.08998 * 109.46549 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5416 2.1124 1.1833 5 6 2.2047 1.5559 2.4169 6 1 2.9718 0.8014 2.3239 7 6 1.8321 2.0100 3.6643 8 7 0.8983 2.9292 3.7775 9 14 2.6545 1.3207 5.1933 10 1 3.6648 0.3069 4.7975 11 1 3.3208 2.4207 5.9356 12 1 1.6312 0.6860 6.0623 13 6 1.6348 2.0795 -1.2359 14 6 2.4510 1.5482 -2.3858 15 6 3.6056 2.2005 -2.7738 16 6 4.3579 1.7103 -3.8249 17 6 3.9548 0.5691 -4.4937 18 7 4.7630 0.0467 -5.6182 19 8 5.7828 0.6216 -5.9539 20 8 4.4086 -0.9588 -6.2074 21 6 2.7985 -0.0837 -4.1132 22 6 2.0415 0.4065 -3.0587 23 8 0.9035 -0.2341 -2.6824 24 6 0.5461 -1.4069 -3.4165 25 1 -0.3633 0.4578 0.9200 26 1 -0.3634 0.5679 -0.8566 27 1 -0.3633 -1.0257 -0.0635 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7878 3.1696 1.0841 31 1 0.4610 1.9975 1.2685 32 1 0.6359 3.2484 4.6551 33 1 1.8172 3.1483 -1.1241 34 1 0.5762 1.9104 -1.4331 35 1 3.9231 3.0914 -2.2523 36 1 5.2623 2.2194 -4.1241 37 1 2.4840 -0.9747 -4.6361 38 1 0.4038 -1.1492 -4.4660 39 1 1.3415 -2.1470 -3.3287 40 1 -0.3797 -1.8187 -3.0150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430246802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:59 Heat of formation + Delta-G solvation = -4.429077 kcal Electronic energy + Delta-G solvation = -24066.314524 eV Core-core repulsion = 20464.396020 eV Total energy + Delta-G solvation = -3601.918504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.25014 -40.68197 -37.84230 -37.15582 -36.61520 -33.05877 -32.25045 -30.67260 -29.49557 -28.16729 -27.74604 -26.06625 -24.30633 -23.21406 -22.64086 -21.74430 -19.77658 -19.39436 -18.78270 -17.59915 -17.04731 -16.52559 -16.42946 -16.22683 -15.67681 -14.97658 -14.81903 -14.38787 -14.01774 -14.01331 -13.18514 -12.96079 -12.77376 -12.23805 -12.08383 -11.91805 -11.68162 -11.62014 -11.55591 -11.40170 -11.21533 -11.15029 -11.10720 -10.96172 -10.69875 -10.56614 -10.07162 -9.86091 -9.46968 -9.25597 -8.64559 -8.48104 -7.30688 -6.08328 -4.09263 -0.22923 0.91734 1.32444 1.34025 2.94800 3.19958 3.26795 3.34929 3.39681 4.28321 4.36035 4.40308 4.52961 4.71261 4.83562 4.92375 5.04619 5.07893 5.25134 5.27723 5.30257 5.52422 5.56005 5.72397 5.84750 5.93615 5.99717 6.09986 6.18474 6.23621 6.36825 6.50629 6.66957 6.93288 6.97424 7.20111 7.36559 7.58753 7.74435 8.00092 8.09957 8.45898 8.99052 9.55221 11.02205 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021852 B = 0.003864 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.057943 B = 7243.745436 C = 7838.114437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.081 3.919 14 C -0.032 4.032 15 C -0.068 4.068 16 C -0.087 4.087 17 C -0.019 4.019 18 N 0.033 4.967 19 O -0.162 6.162 20 O -0.171 6.171 21 C -0.154 4.154 22 C 0.136 3.864 23 O -0.289 6.289 24 C 0.019 3.981 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.007 0.993 32 H 0.261 0.739 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -4.669 -15.560 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.066 4.066 3 N -0.251 5.251 4 C 0.063 3.937 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.047 4.047 14 C -0.033 4.033 15 C -0.087 4.087 16 C -0.106 4.106 17 C -0.102 4.102 18 N 0.551 4.449 19 O -0.378 6.378 20 O -0.385 6.385 21 C -0.174 4.174 22 C 0.088 3.912 23 O -0.201 6.201 24 C -0.076 4.076 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.045 -4.294 -14.693 15.307 hybrid contribution -0.235 -0.694 0.358 0.816 sum -0.280 -4.988 -14.335 15.180 Atomic orbital electron populations 1.22286 0.98983 1.00574 1.01870 1.22025 0.92617 0.90890 1.01086 1.62455 1.59386 1.02248 1.01059 1.19847 0.94769 0.93304 0.85769 1.21151 1.20594 1.22570 0.89904 0.91926 1.24967 0.95221 0.95239 0.99105 1.69962 1.30425 1.29620 1.23841 0.86475 0.79329 0.78933 0.82903 1.19691 1.21016 1.21137 1.21099 0.96209 0.98695 0.88715 1.19981 0.95502 0.91988 0.95863 1.21005 0.92429 1.00570 0.94713 1.20974 1.01068 0.93629 0.94970 1.20700 0.95881 0.99990 0.93620 1.43640 1.00502 0.99744 1.01049 1.94523 1.13615 1.59782 1.69885 1.94512 1.74980 1.14522 1.54502 1.20900 0.94751 1.02558 0.99194 1.18583 0.87308 0.92751 0.92515 1.86386 1.37515 1.40344 1.55860 1.23181 1.01981 0.85925 0.96534 0.91772 0.92988 0.93886 0.92580 0.90684 0.95730 0.97511 0.92985 0.89854 0.92799 0.82603 0.82991 0.82907 0.92517 0.92264 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 8.38 37.16 0.31 -2.73 16 2 C 0.06 1.13 5.32 -3.82 -0.02 1.11 16 3 N -0.53 -10.39 4.63 -237.52 -1.10 -11.49 16 4 C 0.19 4.53 4.51 -4.98 -0.02 4.51 16 5 C -0.50 -13.49 8.45 -34.44 -0.29 -13.78 16 6 H 0.06 1.69 7.47 -52.48 -0.39 1.30 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -25.73 13.29 55.43 0.74 -25.00 16 9 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.08 1.29 4.85 -4.98 -0.02 1.26 16 14 C -0.03 -0.43 5.18 -104.48 -0.54 -0.97 16 15 C -0.07 -0.81 9.68 -39.61 -0.38 -1.19 16 16 C -0.09 -1.01 9.55 -39.56 -0.38 -1.38 16 17 C -0.02 -0.24 6.85 -79.98 -0.55 -0.79 16 18 N 0.03 0.47 4.45 33.95 0.15 0.62 16 19 O -0.16 -2.35 18.44 -29.46 -0.54 -2.90 16 20 O -0.17 -2.49 18.45 -29.46 -0.54 -3.03 16 21 C -0.15 -1.84 8.54 -39.43 -0.34 -2.18 16 22 C 0.14 1.72 5.63 -39.21 -0.22 1.50 16 23 O -0.29 -3.47 5.53 -19.43 -0.11 -3.58 16 24 C 0.02 0.15 9.81 101.05 0.99 1.14 16 25 H 0.06 1.29 6.41 -51.93 -0.33 0.95 16 26 H 0.05 0.83 5.16 -51.93 -0.27 0.56 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.93 4.95 -51.93 -0.26 0.67 16 29 H 0.07 1.54 7.16 -51.93 -0.37 1.16 16 30 H 0.02 0.63 7.80 -51.93 -0.41 0.23 16 31 H 0.01 0.18 5.95 -51.92 -0.31 -0.13 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.08 1.28 7.68 -51.93 -0.40 0.88 16 34 H 0.05 0.86 5.47 -51.93 -0.28 0.58 16 35 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.15 1.49 7.61 -52.48 -0.40 1.09 16 37 H 0.15 1.58 5.85 -52.49 -0.31 1.27 16 38 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 39 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -29.91 327.34 -7.98 -37.89 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.92 Total: -1.46 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.56 Total: -12.07 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.21 Total: -35.87 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.19 Total: -9.51 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.91 -7.98 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430246802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.456 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds