Wall clock time and date at job start Tue Mar 31 2020 08:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46909 * 109.46803 * 2 1 4 4 C 1.46892 * 110.99944 * 59.64224 * 3 2 1 5 5 C 1.50696 * 109.47431 * 68.61154 * 4 3 2 6 6 H 1.08003 * 120.00184 * 5.18953 * 5 4 3 7 7 C 1.37881 * 120.00285 * 185.18836 * 5 4 3 8 8 N 1.31518 * 119.99466 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00158 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47108 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47278 * 120.00301 * 9 7 5 12 12 H 1.48501 * 109.46797 * 239.99842 * 9 7 5 13 13 C 1.46894 * 111.00104 * 295.68093 * 3 2 1 14 14 C 1.50693 * 109.47707 * 287.95950 * 13 3 2 15 15 C 1.38166 * 120.03061 * 264.82029 * 14 13 3 16 16 C 1.38240 * 120.05907 * 179.71866 * 15 14 13 17 17 C 1.38284 * 120.11108 * 0.23531 * 16 15 14 18 18 N 1.48012 * 119.97133 * 180.02562 * 17 16 15 19 19 O 1.21795 * 119.99828 * 0.02562 * 18 17 16 20 20 O 1.21806 * 119.99900 * 179.97438 * 18 17 16 21 21 C 1.38123 * 120.05936 * 0.02562 * 17 16 15 22 22 C 1.38713 * 120.02995 * 85.04752 * 14 13 3 23 23 O 1.35902 * 120.05723 * 0.02562 * 22 14 13 24 24 C 1.42904 * 116.99915 * 180.27381 * 23 22 14 25 25 H 1.09000 * 109.47198 * 296.45678 * 1 2 3 26 26 H 1.09005 * 109.47164 * 56.45632 * 1 2 3 27 27 H 1.08997 * 109.46973 * 176.45490 * 1 2 3 28 28 H 1.09001 * 109.46789 * 240.00378 * 2 1 3 29 29 H 1.08997 * 109.47600 * 119.99855 * 2 1 3 30 30 H 1.08998 * 109.47130 * 188.61281 * 4 3 2 31 31 H 1.09008 * 109.47086 * 308.61078 * 4 3 2 32 32 H 0.97001 * 119.99491 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47569 * 167.95565 * 13 3 2 34 34 H 1.09005 * 109.47281 * 47.96006 * 13 3 2 35 35 H 1.08005 * 119.96805 * 0.02562 * 15 14 13 36 36 H 1.08005 * 119.94592 * 180.25119 * 16 15 14 37 37 H 1.07995 * 120.02763 * 179.97438 * 21 17 16 38 38 H 1.08997 * 109.46924 * 299.99847 * 24 23 22 39 39 H 1.08999 * 109.47129 * 60.00477 * 24 23 22 40 40 H 1.08998 * 109.46549 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5416 2.1124 1.1833 5 6 2.2047 1.5559 2.4169 6 1 2.9718 0.8014 2.3239 7 6 1.8321 2.0100 3.6643 8 7 0.8983 2.9292 3.7775 9 14 2.6545 1.3207 5.1933 10 1 3.6648 0.3069 4.7975 11 1 3.3208 2.4207 5.9356 12 1 1.6312 0.6860 6.0623 13 6 1.6348 2.0795 -1.2359 14 6 2.4510 1.5482 -2.3858 15 6 3.6056 2.2005 -2.7738 16 6 4.3579 1.7103 -3.8249 17 6 3.9548 0.5691 -4.4937 18 7 4.7630 0.0467 -5.6182 19 8 5.7828 0.6216 -5.9539 20 8 4.4086 -0.9588 -6.2074 21 6 2.7985 -0.0837 -4.1132 22 6 2.0415 0.4065 -3.0587 23 8 0.9035 -0.2341 -2.6824 24 6 0.5461 -1.4069 -3.4165 25 1 -0.3633 0.4578 0.9200 26 1 -0.3634 0.5679 -0.8566 27 1 -0.3633 -1.0257 -0.0635 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7878 3.1696 1.0841 31 1 0.4610 1.9975 1.2685 32 1 0.6359 3.2484 4.6551 33 1 1.8172 3.1483 -1.1241 34 1 0.5762 1.9104 -1.4331 35 1 3.9231 3.0914 -2.2523 36 1 5.2623 2.2194 -4.1241 37 1 2.4840 -0.9747 -4.6361 38 1 0.4038 -1.1492 -4.4660 39 1 1.3415 -2.1470 -3.3287 40 1 -0.3797 -1.8187 -3.0150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430246802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:58 Heat of formation + Delta-G solvation = -21.702144 kcal Electronic energy + Delta-G solvation = -24067.063540 eV Core-core repulsion = 20464.396020 eV Total energy + Delta-G solvation = -3602.667520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31101 -41.66397 -38.85885 -38.54209 -37.70409 -34.85104 -33.61888 -31.59845 -31.00604 -29.61592 -28.57837 -27.53060 -25.57896 -24.92358 -23.60227 -22.92933 -21.00500 -20.67721 -19.84630 -18.66532 -18.37758 -17.94908 -17.51147 -17.31576 -16.86869 -16.61743 -16.20619 -15.64002 -15.28532 -14.99137 -14.63146 -14.33505 -13.90111 -13.70566 -13.24433 -13.08809 -13.08125 -12.80909 -12.73749 -12.59824 -12.58696 -12.48571 -12.43067 -12.32748 -12.21079 -12.11626 -11.84910 -11.38409 -11.26519 -10.59302 -10.44598 -9.59413 -8.92075 -8.17243 -6.25433 -1.28623 -0.00377 0.27411 0.30658 1.40238 1.42232 1.54219 2.12442 2.21590 2.42408 3.15882 3.34334 3.37205 3.55256 3.62239 3.72683 4.05742 4.20577 4.33713 4.36107 4.37214 4.40358 4.56622 4.61481 4.67772 4.72888 4.76157 4.81219 5.00638 5.07893 5.11992 5.16363 5.30392 5.37952 5.41712 5.57033 5.70704 6.10037 6.12450 6.36946 6.47936 6.65090 6.91205 7.43711 8.92913 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021852 B = 0.003864 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.057943 B = 7243.745436 C = 7838.114437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.066 3.934 3 N -0.535 5.535 4 C 0.203 3.797 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.085 3.915 14 C -0.049 4.049 15 C -0.062 4.062 16 C -0.082 4.082 17 C -0.026 4.026 18 N 0.033 4.967 19 O -0.172 6.172 20 O -0.179 6.179 21 C -0.150 4.150 22 C 0.138 3.862 23 O -0.305 6.305 24 C 0.009 3.991 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.004 0.996 31 H -0.015 1.015 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 -5.653 -16.420 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.062 4.062 3 N -0.258 5.258 4 C 0.077 3.923 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.207 1.207 13 C -0.042 4.042 14 C -0.050 4.050 15 C -0.081 4.081 16 C -0.102 4.102 17 C -0.109 4.109 18 N 0.548 4.452 19 O -0.387 6.387 20 O -0.392 6.392 21 C -0.169 4.169 22 C 0.090 3.910 23 O -0.218 6.218 24 C -0.085 4.085 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.003 0.997 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.189 0.811 36 H 0.188 0.812 37 H 0.187 0.813 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.434 -5.295 -15.584 16.464 hybrid contribution -0.413 -0.417 0.536 0.795 sum 0.021 -5.712 -15.047 16.095 Atomic orbital electron populations 1.22136 0.97986 1.01892 1.00348 1.21990 0.93375 0.89997 1.00827 1.62307 1.59621 1.02764 1.01144 1.19475 0.93173 0.92455 0.87196 1.21436 1.20389 1.22237 0.91250 0.92566 1.25765 0.95781 0.95520 1.02142 1.70070 1.31765 1.30876 1.24607 0.85474 0.78439 0.78356 0.79197 1.19114 1.20532 1.20658 1.21032 0.96764 0.98608 0.87799 1.19841 0.96265 0.93184 0.95750 1.21166 0.91637 1.00762 0.94538 1.21154 1.01464 0.93187 0.94354 1.20892 0.96119 1.00548 0.93379 1.43820 1.00499 0.99612 1.01234 1.94518 1.14033 1.59866 1.70257 1.94503 1.75028 1.14795 1.54899 1.21012 0.94198 1.02893 0.98824 1.18558 0.87583 0.92438 0.92409 1.86348 1.37092 1.41543 1.56803 1.23485 1.02949 0.84788 0.97292 0.95453 0.91857 0.91446 0.90249 0.93346 0.97798 0.99716 0.92844 0.89713 0.92860 0.81101 0.81229 0.81288 0.91024 0.91495 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 8.38 71.98 0.60 -4.95 16 2 C 0.07 2.39 5.32 86.30 0.46 2.85 16 3 N -0.53 -21.11 4.63 -905.38 -4.19 -25.30 16 4 C 0.20 10.07 4.51 85.56 0.39 10.45 16 5 C -0.51 -28.07 8.45 25.60 0.22 -27.85 16 6 H 0.06 3.08 7.47 -2.91 -0.02 3.05 16 7 C 0.01 0.32 5.46 84.66 0.46 0.79 16 8 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 9 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 C 0.09 2.68 4.85 85.56 0.42 3.10 16 14 C -0.05 -1.25 5.18 -19.77 -0.10 -1.35 16 15 C -0.06 -1.35 9.68 22.25 0.22 -1.14 16 16 C -0.08 -1.72 9.55 22.28 0.21 -1.51 16 17 C -0.03 -0.61 6.85 36.36 0.25 -0.36 16 18 N 0.03 0.86 4.45 -46.51 -0.21 0.66 16 19 O -0.17 -4.73 18.44 18.89 0.35 -4.38 16 20 O -0.18 -4.89 18.45 18.88 0.35 -4.54 16 21 C -0.15 -3.21 8.54 22.37 0.19 -3.02 16 22 C 0.14 3.20 5.63 22.51 0.13 3.33 16 23 O -0.31 -6.64 5.53 -92.44 -0.51 -7.15 16 24 C 0.01 0.12 9.81 113.37 1.11 1.23 16 25 H 0.03 1.11 6.41 -2.39 -0.02 1.09 16 26 H 0.06 1.97 5.16 -2.38 -0.01 1.96 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 2.51 4.95 -2.39 -0.01 2.50 16 29 H 0.05 1.99 7.16 -2.39 -0.02 1.98 16 30 H 0.00 0.21 7.80 -2.39 -0.02 0.19 16 31 H -0.01 -0.80 5.95 -2.38 -0.01 -0.81 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.08 2.59 7.68 -2.39 -0.02 2.57 16 34 H 0.05 1.68 5.47 -2.38 -0.01 1.66 16 35 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.17 2.91 7.61 -2.91 -0.02 2.88 16 37 H 0.17 3.01 5.85 -2.91 -0.02 2.99 16 38 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 39 H 0.07 0.81 7.66 -2.39 -0.02 0.80 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -64.34 327.34 3.72 -60.62 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.07 Total: 7.06 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.55 Total: -18.43 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -4.11 Total: -78.69 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.19 Total: -16.07 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.34 3.72 -60.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430246802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.922 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds