Wall clock time and date at job start Tue Mar 31 2020 06:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34810 * 117.00452 * 2 1 4 4 O 1.21543 * 120.00001 * 0.02562 * 3 2 1 5 5 C 1.47142 * 120.00409 * 180.02562 * 3 2 1 6 6 C 1.38007 * 125.91170 * 179.69382 * 5 3 2 7 7 C 1.39428 * 107.44782 * 179.87499 * 6 5 3 8 8 C 1.37936 * 107.47132 * 0.38197 * 7 6 5 9 9 C 1.47337 * 125.88824 * 179.76180 * 8 7 6 10 10 O 1.21603 * 119.99816 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99839 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99296 * 180.02562 * 11 9 8 13 13 C 1.53008 * 109.46550 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46680 * 299.99693 * 13 12 11 15 15 C 1.52991 * 109.47302 * 59.99991 * 13 12 11 16 16 C 1.50697 * 109.46960 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00277 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00358 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99548 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00334 * 179.97438 * 18 16 13 21 21 H 1.48508 * 109.46839 * 60.00406 * 20 18 16 22 22 H 1.48505 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47181 * 300.00403 * 20 18 16 24 24 N 1.36712 * 108.22796 * 359.76082 * 8 7 6 25 25 H 0.96993 * 125.66723 * 179.97438 * 24 8 7 26 26 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46782 * 60.00025 * 1 2 3 28 28 H 1.09004 * 109.47085 * 300.00144 * 1 2 3 29 29 H 1.07996 * 126.27722 * 359.97438 * 6 5 3 30 30 H 1.07997 * 126.26549 * 180.14185 * 7 6 5 31 31 H 0.97000 * 120.00118 * 359.97438 * 11 9 8 32 32 H 1.09000 * 109.47397 * 299.99472 * 12 11 9 33 33 H 1.09001 * 109.47171 * 60.00385 * 12 11 9 34 34 H 1.09000 * 109.47275 * 60.00675 * 14 13 12 35 35 H 1.09007 * 109.46626 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47327 * 299.99893 * 14 13 12 37 37 H 1.08993 * 109.47577 * 59.99878 * 15 13 12 38 38 H 1.08996 * 109.47512 * 180.02562 * 15 13 12 39 39 H 1.09000 * 109.47263 * 299.99698 * 15 13 12 40 40 H 0.97003 * 119.99708 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2011 0.0000 4 8 1.4022 2.2205 0.0005 5 6 3.5335 1.2781 -0.0006 6 6 4.2834 2.4367 -0.0066 7 6 5.6272 2.0649 -0.0020 8 6 5.6755 0.6864 -0.0019 9 6 6.8987 -0.1349 -0.0027 10 8 7.9905 0.4005 -0.0039 11 7 6.8074 -1.4796 -0.0021 12 6 8.0238 -2.2962 -0.0023 13 6 7.6430 -3.7781 -0.0021 14 6 6.8179 -4.0924 1.2474 15 6 6.8173 -4.0927 -1.2511 16 6 8.8941 -4.6182 -0.0030 17 1 9.8639 -4.1427 -0.0040 18 6 8.8010 -5.9938 -0.0024 19 7 7.6201 -6.5728 -0.0017 20 14 10.3518 -7.0351 -0.0042 21 1 11.1545 -6.7295 1.2073 22 1 9.9823 -8.4734 -0.0039 23 1 11.1514 -6.7301 -1.2178 24 7 4.3927 0.2135 -0.0010 25 1 4.1347 -0.7214 -0.0012 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 3.8997 3.4462 -0.0121 30 1 6.4750 2.7338 -0.0026 31 1 5.9365 -1.9066 -0.0007 32 1 8.6114 -2.0726 -0.8927 33 1 8.6122 -2.0718 0.8874 34 1 5.9129 -3.4849 1.2476 35 1 6.5470 -5.1483 1.2478 36 1 7.4062 -3.8683 2.1373 37 1 7.4051 -3.8688 -2.1412 38 1 6.5457 -5.1483 -1.2507 39 1 5.9124 -3.4852 -1.2509 40 1 7.5545 -7.5406 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458043175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:31 Heat of formation + Delta-G solvation = -84.702622 kcal Electronic energy + Delta-G solvation = -23331.231472 eV Core-core repulsion = 19725.832046 eV Total energy + Delta-G solvation = -3605.399426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71782 -40.25019 -38.91959 -36.74028 -36.47361 -33.53987 -31.51987 -31.03479 -30.14393 -27.96468 -25.92348 -25.84149 -25.21911 -23.76519 -21.79245 -20.66540 -20.07131 -19.34631 -18.78752 -17.63086 -16.92556 -16.74163 -15.91508 -15.27405 -15.21109 -14.88094 -14.43339 -14.21768 -14.11576 -13.70545 -13.37427 -13.01006 -12.92413 -12.83774 -12.77720 -12.48141 -12.30593 -11.49980 -11.28952 -11.16479 -11.06463 -10.92374 -10.79536 -10.49418 -10.29486 -9.95933 -9.75022 -9.42012 -9.34357 -8.90173 -8.77882 -8.50314 -8.40172 -6.09422 -4.19862 0.71044 1.93660 2.24542 2.73309 2.83814 3.26038 3.30605 3.32835 3.43978 3.44156 4.34347 4.49503 4.77827 4.84468 4.86687 5.00088 5.07694 5.17678 5.21477 5.64307 5.86625 5.95178 6.06078 6.20068 6.28549 6.38044 6.54678 6.60836 6.68427 6.78511 6.82031 6.90485 6.95133 7.23873 7.38846 7.44742 7.61024 7.79482 7.90705 8.03830 8.27603 8.39775 8.80317 9.46488 10.92063 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.003393 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.121153 B = 8249.639514 C = 9330.395265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.362 6.362 3 C 0.537 3.463 4 O -0.496 6.496 5 C -0.018 4.018 6 C -0.107 4.107 7 C -0.134 4.134 8 C 0.015 3.985 9 C 0.573 3.427 10 O -0.527 6.527 11 N -0.712 5.712 12 C 0.131 3.869 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.509 4.509 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 N -0.509 5.509 25 H 0.426 0.574 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.393 0.607 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.003 0.997 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.087 0.913 39 H 0.003 0.997 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 11.185 0.000 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.279 6.279 3 C 0.381 3.619 4 O -0.383 6.383 5 C -0.132 4.132 6 C -0.133 4.133 7 C -0.159 4.159 8 C -0.104 4.104 9 C 0.357 3.643 10 O -0.404 6.404 11 N -0.362 5.362 12 C 0.009 3.991 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.547 4.547 17 H 0.077 0.923 18 C -0.134 4.134 19 N -0.524 5.524 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 N -0.107 5.107 25 H 0.265 0.735 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.228 0.772 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.022 0.978 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.090 11.452 -0.002 16.653 hybrid contribution -0.030 -1.277 0.001 1.277 sum -12.120 10.175 -0.001 15.825 Atomic orbital electron populations 1.23322 0.75205 1.04112 1.02800 1.86563 1.24309 1.32494 1.84505 1.19954 0.86902 0.81877 0.73139 1.90887 1.65317 1.35849 1.46286 1.19378 0.86500 0.88467 1.18890 1.21295 0.91927 0.97058 1.03016 1.21286 0.97067 0.92268 1.05286 1.21102 0.83476 0.94944 1.10918 1.17215 0.86864 0.82236 0.77961 1.90818 1.26594 1.72399 1.50576 1.46288 1.11750 1.05183 1.72968 1.21847 0.84200 0.92014 1.01056 1.18371 0.95533 0.87742 0.92843 1.21847 0.95999 1.03370 0.97679 1.21842 0.95994 1.03363 0.97682 1.20925 0.91655 0.90860 1.51263 0.92346 1.24876 0.96102 0.97818 0.94636 1.69784 1.22352 1.09970 1.50315 0.86608 0.83331 0.79043 0.78740 1.20226 1.21311 1.20232 1.42041 1.05272 1.09156 1.54192 0.73462 0.87687 0.91597 0.91587 0.82411 0.82186 0.77227 0.92134 0.92134 0.97811 0.89438 0.95248 0.95244 0.89446 0.97822 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.70 10.58 -40.79 -0.43 -4.14 16 3 C 0.54 6.35 7.95 34.34 0.27 6.63 16 4 O -0.50 -6.75 16.67 -19.30 -0.32 -7.07 16 5 C -0.02 -0.21 7.07 -82.12 -0.58 -0.79 16 6 C -0.11 -1.21 10.61 -39.22 -0.42 -1.63 16 7 C -0.13 -1.66 10.60 -39.25 -0.42 -2.07 16 8 C 0.02 0.21 7.04 -82.10 -0.58 -0.37 16 9 C 0.57 9.54 7.81 -12.56 -0.10 9.44 16 10 O -0.53 -10.49 16.87 5.28 0.09 -10.40 16 11 N -0.71 -11.83 4.96 -61.41 -0.30 -12.13 16 12 C 0.13 2.62 4.50 -4.04 -0.02 2.60 16 13 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 14 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 15 C -0.13 -2.81 8.08 37.15 0.30 -2.51 16 16 C -0.51 -12.84 8.01 -34.44 -0.28 -13.12 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.89 -22.85 9.35 55.43 0.52 -22.33 16 20 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 N -0.51 -5.86 6.01 -5.90 -0.04 -5.89 16 25 H 0.43 4.16 8.15 -40.82 -0.33 3.83 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.39 5.76 5.26 -40.82 -0.21 5.55 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.00 0.05 6.86 -51.93 -0.36 -0.30 16 35 H 0.09 2.09 6.07 -51.92 -0.32 1.77 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 39 H 0.00 0.05 6.86 -51.93 -0.36 -0.30 16 40 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -29.14 339.68 -6.24 -35.37 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.24 Total: 6.50 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.61 Total: -0.21 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.18 Total: -40.35 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.66 Total: -21.60 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.14 -6.24 -35.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458043175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.329 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds