Wall clock time and date at job start Tue Mar 31 2020 06:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34810 * 117.00452 * 2 1 4 4 O 1.21543 * 120.00001 * 0.02562 * 3 2 1 5 5 C 1.47142 * 120.00409 * 180.02562 * 3 2 1 6 6 C 1.38007 * 125.91170 * 179.69382 * 5 3 2 7 7 C 1.39428 * 107.44782 * 179.87499 * 6 5 3 8 8 C 1.37936 * 107.47132 * 0.38197 * 7 6 5 9 9 C 1.47337 * 125.88824 * 179.76180 * 8 7 6 10 10 O 1.21603 * 119.99816 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99839 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99296 * 180.02562 * 11 9 8 13 13 C 1.53008 * 109.46550 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46680 * 299.99693 * 13 12 11 15 15 C 1.52991 * 109.47302 * 59.99991 * 13 12 11 16 16 C 1.50697 * 109.46960 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00277 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00358 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99548 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00334 * 179.97438 * 18 16 13 21 21 H 1.48508 * 109.46839 * 60.00406 * 20 18 16 22 22 H 1.48505 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47181 * 300.00403 * 20 18 16 24 24 N 1.36712 * 108.22796 * 359.76082 * 8 7 6 25 25 H 0.96993 * 125.66723 * 179.97438 * 24 8 7 26 26 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46782 * 60.00025 * 1 2 3 28 28 H 1.09004 * 109.47085 * 300.00144 * 1 2 3 29 29 H 1.07996 * 126.27722 * 359.97438 * 6 5 3 30 30 H 1.07997 * 126.26549 * 180.14185 * 7 6 5 31 31 H 0.97000 * 120.00118 * 359.97438 * 11 9 8 32 32 H 1.09000 * 109.47397 * 299.99472 * 12 11 9 33 33 H 1.09001 * 109.47171 * 60.00385 * 12 11 9 34 34 H 1.09000 * 109.47275 * 60.00675 * 14 13 12 35 35 H 1.09007 * 109.46626 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47327 * 299.99893 * 14 13 12 37 37 H 1.08993 * 109.47577 * 59.99878 * 15 13 12 38 38 H 1.08996 * 109.47512 * 180.02562 * 15 13 12 39 39 H 1.09000 * 109.47263 * 299.99698 * 15 13 12 40 40 H 0.97003 * 119.99708 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2011 0.0000 4 8 1.4022 2.2205 0.0005 5 6 3.5335 1.2781 -0.0006 6 6 4.2834 2.4367 -0.0066 7 6 5.6272 2.0649 -0.0020 8 6 5.6755 0.6864 -0.0019 9 6 6.8987 -0.1349 -0.0027 10 8 7.9905 0.4005 -0.0039 11 7 6.8074 -1.4796 -0.0021 12 6 8.0238 -2.2962 -0.0023 13 6 7.6430 -3.7781 -0.0021 14 6 6.8179 -4.0924 1.2474 15 6 6.8173 -4.0927 -1.2511 16 6 8.8941 -4.6182 -0.0030 17 1 9.8639 -4.1427 -0.0040 18 6 8.8010 -5.9938 -0.0024 19 7 7.6201 -6.5728 -0.0017 20 14 10.3518 -7.0351 -0.0042 21 1 11.1545 -6.7295 1.2073 22 1 9.9823 -8.4734 -0.0039 23 1 11.1514 -6.7301 -1.2178 24 7 4.3927 0.2135 -0.0010 25 1 4.1347 -0.7214 -0.0012 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 3.8997 3.4462 -0.0121 30 1 6.4750 2.7338 -0.0026 31 1 5.9365 -1.9066 -0.0007 32 1 8.6114 -2.0726 -0.8927 33 1 8.6122 -2.0718 0.8874 34 1 5.9129 -3.4849 1.2476 35 1 6.5470 -5.1483 1.2478 36 1 7.4062 -3.8683 2.1373 37 1 7.4051 -3.8688 -2.1412 38 1 6.5457 -5.1483 -1.2507 39 1 5.9124 -3.4852 -1.2509 40 1 7.5545 -7.5406 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458043175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:31 Heat of formation + Delta-G solvation = -102.522883 kcal Electronic energy + Delta-G solvation = -23332.004217 eV Core-core repulsion = 19725.832046 eV Total energy + Delta-G solvation = -3606.172170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.69716 -41.19670 -40.24367 -38.13774 -37.60429 -35.15108 -32.97409 -32.25430 -31.22097 -28.70606 -27.58428 -27.52074 -26.93361 -24.88262 -22.87094 -21.66552 -21.16434 -20.65087 -20.24229 -18.70565 -17.95926 -17.65970 -17.56545 -16.73870 -16.54279 -16.54176 -15.57010 -15.32558 -15.12330 -14.87181 -14.71479 -14.49394 -14.08633 -14.06279 -13.84431 -13.80347 -13.21362 -13.11382 -13.08329 -12.68974 -12.63405 -12.27011 -12.14643 -11.98994 -11.89028 -11.50735 -11.44379 -11.12538 -10.72688 -10.40725 -10.25789 -10.14922 -9.55217 -8.02723 -6.18177 -0.28358 0.90838 1.41018 1.44935 1.46725 1.52556 1.81330 1.92238 2.11435 2.21920 2.47746 3.21533 3.65346 3.70642 4.08148 4.13169 4.27687 4.34021 4.39517 4.49641 4.68327 4.69412 4.72504 4.96446 5.00886 5.01942 5.06484 5.13976 5.17501 5.24903 5.33516 5.50483 5.62099 5.65510 5.67502 6.03326 6.14035 6.19374 6.42075 6.48773 6.51979 6.85350 7.06047 7.49755 8.95922 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.003393 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.121153 B = 8249.639514 C = 9330.395265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.541 3.459 4 O -0.516 6.516 5 C -0.013 4.013 6 C -0.106 4.106 7 C -0.128 4.128 8 C -0.003 4.003 9 C 0.578 3.422 10 O -0.564 6.564 11 N -0.705 5.705 12 C 0.146 3.854 13 C 0.051 3.949 14 C -0.122 4.122 15 C -0.122 4.122 16 C -0.530 4.530 17 H 0.047 0.953 18 C 0.030 3.970 19 N -0.898 5.898 20 Si 0.943 3.057 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.277 1.277 24 N -0.498 5.498 25 H 0.434 0.566 26 H 0.132 0.868 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.177 0.823 30 H 0.168 0.832 31 H 0.404 0.596 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.040 11.796 0.001 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.386 3.614 4 O -0.405 6.405 5 C -0.129 4.129 6 C -0.132 4.132 7 C -0.154 4.154 8 C -0.122 4.122 9 C 0.365 3.635 10 O -0.443 6.443 11 N -0.356 5.356 12 C 0.023 3.977 13 C 0.050 3.950 14 C -0.180 4.180 15 C -0.180 4.180 16 C -0.569 4.569 17 H 0.065 0.935 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.770 3.230 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.203 1.203 24 N -0.097 5.097 25 H 0.275 0.725 26 H 0.150 0.850 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.195 0.805 30 H 0.185 0.815 31 H 0.241 0.759 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.640 12.034 -0.002 18.190 hybrid contribution 0.344 -1.437 0.001 1.477 sum -13.296 10.597 -0.001 17.002 Atomic orbital electron populations 1.23646 0.73399 1.06057 1.03124 1.86557 1.26074 1.31479 1.83947 1.19913 0.86781 0.82074 0.72633 1.90883 1.65687 1.36591 1.47294 1.19549 0.86757 0.88643 1.17934 1.21534 0.91276 0.97936 1.02409 1.21488 0.97911 0.91876 1.04086 1.20600 0.83048 0.94903 1.13640 1.17480 0.87401 0.81970 0.76660 1.90799 1.28340 1.72972 1.52194 1.46044 1.11138 1.05216 1.73179 1.21406 0.85200 0.91297 0.99798 1.18367 0.94660 0.88445 0.93491 1.21691 0.97074 1.02363 0.96857 1.21685 0.97069 1.02357 0.96860 1.21248 0.92558 0.91672 1.51410 0.93488 1.25422 0.98212 0.98700 0.94664 1.69890 1.23293 1.09924 1.50546 0.85843 0.80798 0.77877 0.78440 1.20273 1.20976 1.20286 1.41932 1.04419 1.09651 1.53680 0.72519 0.84997 0.91308 0.91301 0.80542 0.81467 0.75901 0.93484 0.93479 0.94533 0.91822 0.96142 0.96141 0.91829 0.94546 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.55 16 2 O -0.36 -6.54 10.58 -57.22 -0.61 -7.15 16 3 C 0.54 11.58 7.95 70.16 0.56 12.14 16 4 O -0.52 -13.00 16.67 19.69 0.33 -12.67 16 5 C -0.01 -0.29 7.07 40.65 0.29 0.00 16 6 C -0.11 -2.15 10.61 22.50 0.24 -1.91 16 7 C -0.13 -2.93 10.60 22.48 0.24 -2.69 16 8 C 0.00 -0.07 7.04 40.71 0.29 0.22 16 9 C 0.58 18.70 7.81 86.64 0.68 19.38 16 10 O -0.56 -22.34 16.87 -4.04 -0.07 -22.41 16 11 N -0.71 -22.57 4.96 -466.45 -2.31 -24.88 16 12 C 0.15 5.83 4.50 86.38 0.39 6.22 16 13 C 0.05 2.23 0.50 -52.93 -0.03 2.21 16 14 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 15 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 16 C -0.53 -27.03 8.01 25.60 0.21 -26.83 16 17 H 0.05 2.44 7.74 -2.91 -0.02 2.41 16 18 C 0.03 1.53 5.15 84.65 0.44 1.97 16 19 N -0.90 -46.38 9.35 21.45 0.20 -46.18 16 20 Si 0.94 41.52 29.54 68.60 2.03 43.55 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 24 N -0.50 -10.33 6.01 -172.59 -1.04 -11.37 16 25 H 0.43 7.35 8.15 -92.71 -0.76 6.59 16 26 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.40 10.95 5.26 -92.71 -0.49 10.47 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 1.25 6.86 -2.39 -0.02 1.23 16 35 H 0.06 3.01 6.07 -2.38 -0.01 2.99 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 39 H 0.04 1.24 6.86 -2.39 -0.02 1.22 16 40 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 Total: -1.00 -61.93 339.68 4.02 -57.91 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.16 Total: 20.01 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.65 Total: 3.20 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.15 Total: -82.43 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -0.35 Total: -42.23 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -61.93 4.02 -57.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458043175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.615 kcal (2) G-P(sol) polarization free energy of solvation -61.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds