Wall clock time and date at job start Tue Mar 31 2020 07:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46972 * 2 1 4 4 C 1.35899 * 117.00166 * 179.97438 * 3 2 1 5 5 C 1.38756 * 120.05212 * 0.02562 * 4 3 2 6 6 C 1.38126 * 119.94285 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.97042 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46846 * 90.00128 * 7 6 5 9 9 C 1.36944 * 119.99849 * 89.99900 * 8 7 6 10 10 H 1.07994 * 119.99726 * 213.91740 * 9 8 7 11 11 C 1.38810 * 119.99854 * 34.19341 * 9 8 7 12 12 N 1.31617 * 120.00464 * 22.65139 * 11 9 8 13 13 Si 1.86807 * 119.99620 * 202.64929 * 11 9 8 14 14 H 1.48504 * 109.46768 * 60.00231 * 13 11 9 15 15 H 1.48504 * 109.46817 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47026 * 300.00430 * 13 11 9 17 17 C 1.46495 * 120.00168 * 269.99473 * 8 7 6 18 18 C 1.52997 * 109.47274 * 272.38639 * 17 8 7 19 19 C 1.38286 * 120.05344 * 0.25082 * 6 5 4 20 20 C 1.38244 * 120.11129 * 359.49026 * 19 6 5 21 21 C 1.38160 * 120.05691 * 0.51011 * 20 19 6 22 22 N 1.48003 * 120.03072 * 179.72546 * 21 20 19 23 23 O 1.21806 * 119.99994 * 0.02562 * 22 21 20 24 24 O 1.21802 * 120.00442 * 180.02562 * 22 21 20 25 25 H 1.09005 * 109.47003 * 299.99344 * 1 2 3 26 26 H 1.08999 * 109.47313 * 59.99485 * 1 2 3 27 27 H 1.08996 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47003 * 240.00656 * 2 1 3 29 29 H 1.09000 * 109.47667 * 120.00106 * 2 1 3 30 30 H 1.08003 * 120.03130 * 0.03291 * 5 4 3 31 31 H 1.08993 * 109.47393 * 329.99871 * 7 6 5 32 32 H 1.09001 * 109.46660 * 209.99984 * 7 6 5 33 33 H 0.96998 * 120.00453 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46958 * 32.38317 * 17 8 7 35 35 H 1.08997 * 109.47433 * 152.38117 * 17 8 7 36 36 H 1.08996 * 109.47549 * 59.99902 * 18 17 8 37 37 H 1.09006 * 109.46909 * 180.02562 * 18 17 8 38 38 H 1.08998 * 109.47166 * 299.99364 * 18 17 8 39 39 H 1.08002 * 119.94458 * 179.72390 * 19 6 5 40 40 H 1.08008 * 119.96884 * 180.23261 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5255 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6095 0.0016 7 6 6.4887 -0.5842 0.0022 8 7 6.7877 -0.9708 -1.3789 9 6 7.8670 -0.4277 -2.0235 10 1 7.8222 -0.2380 -3.0857 11 6 9.0206 -0.1264 -1.3126 12 7 9.2697 -0.7362 -0.1732 13 14 10.2195 1.1448 -1.9733 14 1 9.5293 2.4528 -2.1085 15 1 11.3616 1.2830 -1.0342 16 1 10.7200 0.7096 -3.3019 17 6 5.9324 -1.9385 -2.0703 18 6 6.4292 -3.3564 -1.7811 19 6 6.0962 1.8879 0.0080 20 6 5.2551 2.9851 0.0026 21 6 3.8850 2.8067 0.0015 22 7 2.9851 3.9817 0.0019 23 8 3.4523 5.1066 0.0027 24 8 1.7774 3.8239 0.0014 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8935 -0.5138 0.8899 30 1 3.7886 -0.5728 -0.0005 31 1 6.0051 -1.4153 0.5155 32 1 7.4150 -0.3289 0.5168 33 1 10.0760 -0.5259 0.3234 34 1 4.9064 -1.8339 -1.7172 35 1 5.9678 -1.7529 -3.1438 36 1 6.3937 -3.5420 -0.7077 37 1 5.7929 -4.0763 -2.2960 38 1 7.4550 -3.4610 -2.1343 39 1 7.1668 2.0295 0.0133 40 1 5.6694 3.9825 0.0038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492752320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:24 Heat of formation + Delta-G solvation = -4.077120 kcal Electronic energy + Delta-G solvation = -24222.891231 eV Core-core repulsion = 20620.987989 eV Total energy + Delta-G solvation = -3601.903242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.71381 -40.04221 -37.93136 -36.09292 -35.94177 -32.45072 -32.14541 -31.60404 -29.74947 -29.11431 -27.08929 -24.81396 -24.23745 -23.39999 -21.84463 -21.42782 -20.32944 -19.04267 -18.21755 -17.48910 -17.11821 -16.90313 -16.13924 -15.70694 -15.01894 -14.50318 -14.33785 -14.25996 -13.90045 -13.55485 -13.41607 -12.81363 -12.69827 -12.42717 -12.00769 -11.77023 -11.66278 -11.42099 -11.33026 -11.16379 -11.08628 -10.88660 -10.81055 -10.67189 -10.60591 -10.56936 -10.30925 -10.26032 -10.04378 -8.98517 -8.81206 -8.29958 -6.99070 -6.12685 -3.61363 0.36210 1.42038 1.85394 1.92899 2.97864 3.19926 3.27577 3.30324 3.70982 4.24752 4.64722 4.77060 4.80551 4.98035 5.08606 5.11978 5.19625 5.25319 5.36503 5.48476 5.53843 5.67552 5.75965 5.85649 5.92706 6.05654 6.17053 6.23732 6.23924 6.41502 6.44642 6.71584 6.73419 6.80608 6.86993 7.02216 7.22273 7.32993 7.53704 8.16198 8.17766 8.82396 9.45250 10.00154 10.87625 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014928 B = 0.005529 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.273685 B = 5063.277898 C = 6572.229070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.289 6.289 4 C 0.192 3.808 5 C -0.219 4.219 6 C 0.016 3.984 7 C 0.160 3.840 8 N -0.569 5.569 9 C -0.256 4.256 10 H 0.066 0.934 11 C 0.012 3.988 12 N -0.876 5.876 13 Si 0.896 3.104 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.141 3.859 18 C -0.162 4.162 19 C -0.133 4.133 20 C -0.029 4.029 21 C -0.105 4.105 22 N 0.048 4.952 23 O -0.203 6.203 24 O -0.160 6.160 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.140 0.860 31 H 0.043 0.957 32 H 0.118 0.882 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.034 0.966 38 H 0.057 0.943 39 H 0.144 0.856 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 -1.260 1.841 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.200 6.200 4 C 0.143 3.857 5 C -0.239 4.239 6 C 0.011 3.989 7 C 0.034 3.966 8 N -0.287 5.287 9 C -0.385 4.385 10 H 0.084 0.916 11 C -0.189 4.189 12 N -0.517 5.517 13 Si 0.724 3.276 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.204 1.204 17 C 0.015 3.985 18 C -0.222 4.222 19 C -0.153 4.153 20 C -0.048 4.048 21 C -0.191 4.191 22 N 0.560 4.440 23 O -0.408 6.408 24 O -0.377 6.377 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.062 0.938 32 H 0.135 0.865 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.162 0.838 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.915 -1.688 1.917 10.239 hybrid contribution 0.547 0.732 -0.384 0.991 sum -9.368 -0.956 1.533 9.541 Atomic orbital electron populations 1.21748 0.92318 1.02661 1.03880 1.22933 0.96281 0.81582 1.01839 1.86339 1.17330 1.29580 1.86797 1.18584 0.83677 0.91514 0.91928 1.21187 0.93818 0.97075 1.11866 1.21631 0.93777 0.98320 0.85175 1.20316 0.98158 0.89631 0.88534 1.43825 1.28375 1.44579 1.11888 1.19137 0.89991 1.35696 0.93723 0.91600 1.25122 0.96491 0.99542 0.97769 1.69938 1.25942 1.39364 1.16418 0.86472 0.80357 0.82088 0.78695 1.20417 1.21235 1.20410 1.20930 0.92467 0.88691 0.96371 1.22243 1.01477 0.97839 1.00612 1.21095 1.00676 0.90602 1.02907 1.20879 0.89078 1.01538 0.93309 1.20294 0.90366 0.82509 1.25964 1.43369 1.01508 1.02085 0.97027 1.94476 1.80285 1.10035 1.55992 1.94519 0.97109 1.92738 1.53356 0.91344 0.91303 0.90381 0.91584 0.91650 0.84259 0.93837 0.86506 0.92895 0.94937 0.93449 0.93659 0.94699 0.92407 0.83801 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.95 16 2 C 0.05 0.55 5.46 37.16 0.20 0.75 16 3 O -0.29 -4.50 8.15 -41.54 -0.34 -4.84 16 4 C 0.19 3.23 6.67 -39.22 -0.26 2.97 16 5 C -0.22 -3.52 8.69 -39.43 -0.34 -3.86 16 6 C 0.02 0.29 5.46 -104.65 -0.57 -0.28 16 7 C 0.16 3.19 5.43 -5.19 -0.03 3.17 16 8 N -0.57 -12.26 2.43 -174.62 -0.42 -12.69 16 9 C -0.26 -6.18 9.47 -15.06 -0.14 -6.32 16 10 H 0.07 1.62 7.93 -52.49 -0.42 1.21 16 11 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 12 N -0.88 -22.10 11.31 55.49 0.63 -21.47 16 13 Si 0.90 19.48 29.61 -169.99 -5.03 14.45 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 C 0.14 2.61 6.39 -4.05 -0.03 2.58 16 18 C -0.16 -2.83 10.24 37.16 0.38 -2.45 16 19 C -0.13 -2.38 9.70 -39.56 -0.38 -2.76 16 20 C -0.03 -0.49 9.55 -39.61 -0.38 -0.87 16 21 C -0.10 -1.89 6.86 -79.81 -0.55 -2.44 16 22 N 0.05 0.92 4.45 34.03 0.15 1.08 16 23 O -0.20 -3.90 18.45 -29.46 -0.54 -4.44 16 24 O -0.16 -3.12 17.24 -36.49 -0.63 -3.75 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.70 7.66 -51.93 -0.40 0.30 16 29 H 0.07 0.65 7.66 -51.93 -0.40 0.26 16 30 H 0.14 1.92 6.30 -52.48 -0.33 1.59 16 31 H 0.04 0.81 8.01 -51.93 -0.42 0.39 16 32 H 0.12 2.65 5.26 -51.93 -0.27 2.38 16 33 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 34 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.05 0.88 8.02 -51.93 -0.42 0.46 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.14 2.64 8.06 -52.49 -0.42 2.22 16 40 H 0.15 2.26 7.61 -52.48 -0.40 1.86 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -27.06 343.89 -8.37 -35.44 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.56 Total: 1.31 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.80 Total: -10.26 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.35 Total: -33.08 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.51 Total: -13.04 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.06 -8.37 -35.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492752320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.359 kcal (2) G-P(sol) polarization free energy of solvation -27.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds