Wall clock time and date at job start Tue Mar 31 2020 07:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46972 * 2 1 4 4 C 1.35899 * 117.00166 * 179.97438 * 3 2 1 5 5 C 1.38756 * 120.05212 * 0.02562 * 4 3 2 6 6 C 1.38126 * 119.94285 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.97042 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46846 * 90.00128 * 7 6 5 9 9 C 1.36944 * 119.99849 * 89.99900 * 8 7 6 10 10 H 1.07994 * 119.99726 * 213.91740 * 9 8 7 11 11 C 1.38810 * 119.99854 * 34.19341 * 9 8 7 12 12 N 1.31617 * 120.00464 * 22.65139 * 11 9 8 13 13 Si 1.86807 * 119.99620 * 202.64929 * 11 9 8 14 14 H 1.48504 * 109.46768 * 60.00231 * 13 11 9 15 15 H 1.48504 * 109.46817 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47026 * 300.00430 * 13 11 9 17 17 C 1.46495 * 120.00168 * 269.99473 * 8 7 6 18 18 C 1.52997 * 109.47274 * 272.38639 * 17 8 7 19 19 C 1.38286 * 120.05344 * 0.25082 * 6 5 4 20 20 C 1.38244 * 120.11129 * 359.49026 * 19 6 5 21 21 C 1.38160 * 120.05691 * 0.51011 * 20 19 6 22 22 N 1.48003 * 120.03072 * 179.72546 * 21 20 19 23 23 O 1.21806 * 119.99994 * 0.02562 * 22 21 20 24 24 O 1.21802 * 120.00442 * 180.02562 * 22 21 20 25 25 H 1.09005 * 109.47003 * 299.99344 * 1 2 3 26 26 H 1.08999 * 109.47313 * 59.99485 * 1 2 3 27 27 H 1.08996 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47003 * 240.00656 * 2 1 3 29 29 H 1.09000 * 109.47667 * 120.00106 * 2 1 3 30 30 H 1.08003 * 120.03130 * 0.03291 * 5 4 3 31 31 H 1.08993 * 109.47393 * 329.99871 * 7 6 5 32 32 H 1.09001 * 109.46660 * 209.99984 * 7 6 5 33 33 H 0.96998 * 120.00453 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46958 * 32.38317 * 17 8 7 35 35 H 1.08997 * 109.47433 * 152.38117 * 17 8 7 36 36 H 1.08996 * 109.47549 * 59.99902 * 18 17 8 37 37 H 1.09006 * 109.46909 * 180.02562 * 18 17 8 38 38 H 1.08998 * 109.47166 * 299.99364 * 18 17 8 39 39 H 1.08002 * 119.94458 * 179.72390 * 19 6 5 40 40 H 1.08008 * 119.96884 * 180.23261 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5255 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6095 0.0016 7 6 6.4887 -0.5842 0.0022 8 7 6.7877 -0.9708 -1.3789 9 6 7.8670 -0.4277 -2.0235 10 1 7.8222 -0.2380 -3.0857 11 6 9.0206 -0.1264 -1.3126 12 7 9.2697 -0.7362 -0.1732 13 14 10.2195 1.1448 -1.9733 14 1 9.5293 2.4528 -2.1085 15 1 11.3616 1.2830 -1.0342 16 1 10.7200 0.7096 -3.3019 17 6 5.9324 -1.9385 -2.0703 18 6 6.4292 -3.3564 -1.7811 19 6 6.0962 1.8879 0.0080 20 6 5.2551 2.9851 0.0026 21 6 3.8850 2.8067 0.0015 22 7 2.9851 3.9817 0.0019 23 8 3.4523 5.1066 0.0027 24 8 1.7774 3.8239 0.0014 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8935 -0.5138 0.8899 30 1 3.7886 -0.5728 -0.0005 31 1 6.0051 -1.4153 0.5155 32 1 7.4150 -0.3289 0.5168 33 1 10.0760 -0.5259 0.3234 34 1 4.9064 -1.8339 -1.7172 35 1 5.9678 -1.7529 -3.1438 36 1 6.3937 -3.5420 -0.7077 37 1 5.7929 -4.0763 -2.2960 38 1 7.4550 -3.4610 -2.1343 39 1 7.1668 2.0295 0.0133 40 1 5.6694 3.9825 0.0038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492752320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:24 Heat of formation + Delta-G solvation = -15.237148 kcal Electronic energy + Delta-G solvation = -24223.375166 eV Core-core repulsion = 20620.987989 eV Total energy + Delta-G solvation = -3602.387177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.18169 -41.34871 -39.24874 -37.62987 -37.43680 -33.91569 -33.68607 -32.66845 -31.04430 -30.61043 -28.66262 -26.39676 -25.44372 -24.80614 -23.13545 -22.69748 -21.85260 -20.44778 -19.70328 -18.99567 -18.58481 -18.34689 -17.18253 -17.08030 -16.71790 -15.97581 -15.81630 -15.60935 -15.46961 -14.79790 -14.50843 -14.26369 -13.91595 -13.44488 -13.28255 -13.12724 -13.01402 -12.88903 -12.82600 -12.59948 -12.46500 -12.39558 -12.31491 -12.19822 -12.13319 -11.90081 -11.84793 -11.71814 -11.54249 -10.59767 -10.38184 -9.62290 -8.70576 -7.91486 -5.45039 -1.07993 0.08045 0.40026 0.48450 1.45221 1.50915 1.54832 1.86113 2.31192 2.49838 3.18282 3.36268 3.56990 3.73442 3.85813 3.93115 4.03001 4.11601 4.14897 4.34551 4.39188 4.44633 4.63250 4.73930 4.78065 4.84668 4.85711 4.94999 4.98059 5.07605 5.25049 5.25900 5.29108 5.40731 5.46261 5.56008 5.64509 5.74588 6.05720 6.40372 6.66271 7.08410 7.76329 8.26264 9.05911 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014928 B = 0.005529 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.273685 B = 5063.277898 C = 6572.229070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.035 3.965 3 O -0.301 6.301 4 C 0.198 3.802 5 C -0.205 4.205 6 C 0.015 3.985 7 C 0.165 3.835 8 N -0.584 5.584 9 C -0.264 4.264 10 H 0.054 0.946 11 C -0.021 4.021 12 N -0.903 5.903 13 Si 0.939 3.061 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.136 3.864 18 C -0.152 4.152 19 C -0.142 4.142 20 C -0.022 4.022 21 C -0.118 4.118 22 N 0.047 4.953 23 O -0.210 6.210 24 O -0.168 6.168 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.168 0.832 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.256 0.744 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.134 0.866 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.357 -1.922 1.830 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 O -0.213 6.213 4 C 0.149 3.851 5 C -0.225 4.225 6 C 0.011 3.989 7 C 0.039 3.961 8 N -0.304 5.304 9 C -0.394 4.394 10 H 0.072 0.928 11 C -0.219 4.219 12 N -0.546 5.546 13 Si 0.768 3.232 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.011 3.989 18 C -0.211 4.211 19 C -0.162 4.162 20 C -0.042 4.042 21 C -0.204 4.204 22 N 0.557 4.443 23 O -0.414 6.414 24 O -0.384 6.384 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.186 0.814 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.152 0.848 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.941 -2.337 1.903 12.315 hybrid contribution 0.960 0.929 -0.348 1.381 sum -10.981 -1.407 1.555 11.179 Atomic orbital electron populations 1.21796 0.90693 1.04402 1.03378 1.23371 0.97634 0.79702 1.03180 1.86363 1.16289 1.32550 1.86110 1.18651 0.84628 0.91061 0.90805 1.21329 0.92632 0.98202 1.10332 1.21495 0.94456 0.97528 0.85430 1.20122 0.97499 0.90724 0.87734 1.43954 1.28507 1.45863 1.12036 1.19176 0.91076 1.35659 0.93477 0.92784 1.25516 0.97543 1.00737 0.98131 1.70024 1.26299 1.40787 1.17464 0.85789 0.78937 0.80707 0.77793 1.20312 1.21706 1.20735 1.21082 0.93370 0.88445 0.96020 1.22120 1.00229 0.98249 1.00517 1.21044 1.00370 0.91082 1.03737 1.20952 0.88740 1.01981 0.92482 1.20544 0.90566 0.82698 1.26571 1.43526 1.01597 1.02338 0.96794 1.94469 1.80256 1.10477 1.56214 1.94509 0.97432 1.92804 1.53625 0.91738 0.91941 0.87487 0.90411 0.89990 0.81440 0.92435 0.89200 0.93469 0.92197 0.93904 0.94097 0.91410 0.95485 0.84826 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.03 0.66 5.46 71.98 0.39 1.05 16 3 O -0.30 -8.57 8.15 -71.26 -0.58 -9.15 16 4 C 0.20 6.18 6.67 22.51 0.15 6.33 16 5 C -0.21 -5.98 8.69 22.37 0.19 -5.78 16 6 C 0.02 0.53 5.46 -19.88 -0.11 0.42 16 7 C 0.17 6.46 5.43 85.63 0.46 6.93 16 8 N -0.58 -24.79 2.43 -706.37 -1.72 -26.50 16 9 C -0.26 -12.81 9.47 84.03 0.80 -12.01 16 10 H 0.05 2.70 7.93 -2.91 -0.02 2.68 16 11 C -0.02 -1.01 4.96 84.86 0.42 -0.59 16 12 N -0.90 -46.48 11.31 21.65 0.24 -46.23 16 13 Si 0.94 40.63 29.61 68.60 2.03 42.66 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 17 C 0.14 4.76 6.39 86.38 0.55 5.31 16 18 C -0.15 -5.04 10.24 71.98 0.74 -4.30 16 19 C -0.14 -5.00 9.70 22.28 0.22 -4.78 16 20 C -0.02 -0.74 9.55 22.25 0.21 -0.52 16 21 C -0.12 -4.04 6.86 36.47 0.25 -3.79 16 22 N 0.05 1.75 4.45 -46.25 -0.21 1.54 16 23 O -0.21 -7.83 18.45 18.88 0.35 -7.48 16 24 O -0.17 -6.29 17.24 25.61 0.44 -5.85 16 25 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.31 7.66 -2.38 -0.02 1.29 16 29 H 0.08 1.30 7.66 -2.39 -0.02 1.28 16 30 H 0.17 3.89 6.30 -2.91 -0.02 3.87 16 31 H 0.06 2.04 8.01 -2.39 -0.02 2.02 16 32 H 0.09 4.12 5.26 -2.39 -0.01 4.11 16 33 H 0.26 12.90 8.31 -92.71 -0.77 12.13 16 34 H 0.06 1.76 8.09 -2.39 -0.02 1.74 16 35 H 0.04 1.53 8.02 -2.39 -0.02 1.51 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 40 H 0.16 4.77 7.61 -2.91 -0.02 4.75 16 Total: -1.00 -57.96 343.89 6.62 -51.34 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.04 Total: 12.83 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 5.02 Total: -13.15 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.68 Total: -71.19 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.21 Total: -22.49 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -57.96 6.62 -51.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492752320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.106 kcal (2) G-P(sol) polarization free energy of solvation -57.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds