Wall clock time and date at job start Tue Mar 31 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47134 * 2 1 4 4 H 1.09002 * 109.47603 * 175.06736 * 3 2 1 5 5 C 1.50708 * 109.46854 * 55.06937 * 3 2 1 6 6 H 1.07998 * 119.99639 * 245.69133 * 5 3 2 7 7 C 1.37873 * 120.00269 * 65.70025 * 5 3 2 8 8 N 1.31517 * 120.00021 * 5.49219 * 7 5 3 9 9 Si 1.86796 * 120.00073 * 185.49980 * 7 5 3 10 10 H 1.48498 * 109.47090 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46784 * 299.99242 * 9 7 5 12 12 H 1.48496 * 109.47487 * 59.99539 * 9 7 5 13 13 N 1.46894 * 109.47496 * 295.06921 * 3 2 1 14 14 C 1.46900 * 110.99903 * 279.82612 * 13 3 2 15 15 C 1.53002 * 109.47313 * 185.01569 * 14 13 3 16 16 O 1.42906 * 109.46801 * 65.00329 * 15 14 13 17 17 C 1.35896 * 117.00164 * 180.02562 * 16 15 14 18 18 C 1.38751 * 120.05361 * 359.97438 * 17 16 15 19 19 C 1.38126 * 119.94362 * 179.97438 * 18 17 16 20 20 C 1.38290 * 120.05526 * 0.02562 * 19 18 17 21 21 C 1.38241 * 120.11116 * 359.97438 * 20 19 18 22 22 C 1.38162 * 120.05525 * 359.75019 * 21 20 19 23 23 N 1.48013 * 120.02982 * 180.25379 * 22 21 20 24 24 O 1.21801 * 119.99551 * 0.27335 * 23 22 21 25 25 O 1.21797 * 120.00252 * 180.27299 * 23 22 21 26 26 H 1.09000 * 109.47146 * 65.00430 * 1 2 3 27 27 H 1.09002 * 109.47048 * 185.00693 * 1 2 3 28 28 H 1.09003 * 109.47168 * 305.00694 * 1 2 3 29 29 H 1.09002 * 109.47219 * 240.00531 * 2 1 3 30 30 H 1.09002 * 109.47111 * 120.00094 * 2 1 3 31 31 H 0.96999 * 119.99483 * 355.14922 * 8 7 5 32 32 H 1.00906 * 110.99962 * 43.77741 * 13 3 2 33 33 H 1.08993 * 109.47352 * 305.01909 * 14 13 3 34 34 H 1.09008 * 109.47064 * 65.02366 * 14 13 3 35 35 H 1.08993 * 109.47408 * 184.99853 * 15 14 13 36 36 H 1.08995 * 109.47370 * 305.00909 * 15 14 13 37 37 H 1.07995 * 120.03102 * 359.95420 * 18 17 16 38 38 H 1.07997 * 119.97590 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.94519 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.97388 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4403 2.1872 1.1649 6 1 0.7569 3.0048 0.9890 7 6 1.7644 1.8250 2.4552 8 7 2.6774 0.9031 2.6698 9 14 0.9064 2.6436 3.8985 10 1 1.4298 2.0812 5.1692 11 1 1.1620 4.1060 3.8615 12 1 -0.5549 2.3941 3.8121 13 7 1.6500 2.0998 -1.2544 14 6 2.5595 1.7303 -2.3472 15 6 2.1991 2.5276 -3.6024 16 8 2.4350 3.9174 -3.3678 17 6 2.1632 4.7705 -4.3901 18 6 1.6799 4.2800 -5.5947 19 6 1.4039 5.1491 -6.6321 20 6 1.6094 6.5072 -6.4711 21 6 2.0909 6.9984 -5.2720 22 6 2.3631 6.1337 -4.2294 23 7 2.8733 6.6609 -2.9438 24 8 3.0485 7.8580 -2.8032 25 8 3.1178 5.8977 -2.0267 26 1 -0.3633 0.4342 -0.9314 27 1 -0.3633 -1.0238 0.0897 28 1 -0.3633 0.5896 0.8418 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0721 0.4281 1.9218 32 1 0.6930 1.8858 -1.4925 33 1 3.5860 1.9540 -2.0570 34 1 2.4645 0.6643 -2.5543 35 1 2.8147 2.1904 -4.4363 36 1 1.1470 2.3730 -3.8414 37 1 1.5199 3.2194 -5.7212 38 1 1.0272 4.7679 -7.5697 39 1 1.3934 7.1851 -7.2836 40 1 2.2509 8.0594 -5.1488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521063468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:12 Heat of formation + Delta-G solvation = -14.469659 kcal Electronic energy + Delta-G solvation = -23753.707705 eV Core-core repulsion = 20151.353809 eV Total energy + Delta-G solvation = -3602.353896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90014 -40.31261 -38.09616 -36.73373 -36.06703 -33.19503 -32.16812 -31.11313 -30.39642 -28.41824 -26.30250 -25.41551 -23.58618 -23.42845 -22.43826 -21.44622 -19.53995 -19.44291 -18.30893 -18.02846 -17.22738 -16.84995 -16.13265 -15.97898 -15.65940 -14.91073 -14.80248 -14.06602 -13.64521 -13.55716 -13.44058 -13.04331 -12.74159 -12.49778 -12.36469 -12.06829 -11.86948 -11.24986 -11.17280 -11.03345 -10.96054 -10.69727 -10.69327 -10.68106 -10.21953 -10.09011 -9.98093 -9.87851 -9.85532 -8.81571 -8.57233 -8.15630 -7.30917 -6.21270 -3.90083 -0.06760 0.76827 1.45210 1.64136 2.80582 3.07036 3.52890 3.57090 3.74151 4.11722 4.22942 4.53054 4.59075 4.60112 4.75193 4.79375 4.90880 5.11217 5.17302 5.43361 5.46715 5.52679 5.59409 5.76747 5.78837 6.01731 6.05812 6.09796 6.14499 6.31621 6.61297 6.63148 6.96246 6.99588 7.08206 7.23562 7.31353 7.92522 7.98877 8.31107 8.46671 8.73034 9.01516 9.77516 11.15224 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.004133 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.685784 B = 6773.792832 C = 7855.352679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.154 4.154 3 C 0.205 3.795 4 H 0.029 0.971 5 C -0.566 4.566 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.919 5.919 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.287 1.287 12 H -0.290 1.290 13 N -0.666 5.666 14 C 0.057 3.943 15 C 0.059 3.941 16 O -0.251 6.251 17 C 0.205 3.795 18 C -0.221 4.221 19 C -0.029 4.029 20 C -0.168 4.168 21 C -0.020 4.020 22 C -0.086 4.086 23 N 0.029 4.971 24 O -0.198 6.198 25 O -0.104 6.104 26 H 0.030 0.970 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.019 0.981 30 H 0.068 0.932 31 H 0.268 0.732 32 H 0.325 0.675 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.083 5.083 -21.914 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.194 4.194 3 C 0.097 3.903 4 H 0.047 0.953 5 C -0.604 4.604 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.895 3.105 10 H -0.211 1.211 11 H -0.213 1.213 12 H -0.217 1.217 13 N -0.296 5.296 14 C -0.073 4.073 15 C -0.016 4.016 16 O -0.160 6.160 17 C 0.153 3.847 18 C -0.240 4.240 19 C -0.048 4.048 20 C -0.187 4.187 21 C -0.039 4.039 22 C -0.171 4.171 23 N 0.548 4.452 24 O -0.402 6.402 25 O -0.332 6.332 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.936 5.615 -20.528 21.484 hybrid contribution -0.228 -1.110 -1.840 2.161 sum -3.164 4.505 -22.368 23.036 Atomic orbital electron populations 1.21594 0.96812 0.99062 1.01375 1.22294 0.96134 1.01567 0.99381 1.19350 0.95838 0.88104 0.87033 0.95314 1.21783 1.29855 1.17851 0.90947 0.92651 1.25682 0.95792 0.97081 0.99983 1.70821 1.24686 1.24699 1.35455 0.83579 0.75365 0.75862 0.75724 1.21056 1.21334 1.21692 1.60729 1.04225 1.62366 1.02310 1.21968 1.00094 0.94568 0.90684 1.23238 1.00617 0.78060 0.99735 1.86660 1.77853 1.17974 1.33532 1.18885 0.89059 0.88397 0.88328 1.21376 1.07936 1.01962 0.92734 1.21363 0.92171 0.93052 0.98182 1.21037 1.04338 0.95914 0.97430 1.20940 0.92072 1.00585 0.90344 1.20607 1.16976 0.91537 0.87940 1.43369 0.98799 1.00762 1.02251 1.94481 1.58408 0.98977 1.88338 1.94761 1.51570 1.55001 1.31822 0.95071 0.95403 0.90739 0.96250 0.91367 0.92074 0.85690 0.90072 0.93855 0.91675 0.91733 0.83369 0.84109 0.83826 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.38 37.16 0.35 -2.30 16 2 C -0.15 -3.40 5.45 -26.73 -0.15 -3.55 16 3 C 0.20 5.01 1.95 -68.87 -0.13 4.88 16 4 H 0.03 0.79 7.32 -51.93 -0.38 0.41 16 5 C -0.57 -15.75 7.18 -34.44 -0.25 -15.99 16 6 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 7 C 0.02 0.50 5.29 -17.82 -0.09 0.41 16 8 N -0.92 -27.45 13.21 55.43 0.73 -26.72 16 9 Si 1.07 25.81 29.91 -169.99 -5.08 20.73 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.67 -13.84 6.14 -107.95 -0.66 -14.51 16 14 C 0.06 0.94 5.86 -3.82 -0.02 0.92 16 15 C 0.06 0.76 5.06 37.16 0.19 0.94 16 16 O -0.25 -4.05 8.10 -41.53 -0.34 -4.39 16 17 C 0.20 2.75 6.67 -39.22 -0.26 2.49 16 18 C -0.22 -2.04 9.04 -39.43 -0.36 -2.39 16 19 C -0.03 -0.20 10.04 -39.60 -0.40 -0.60 16 20 C -0.17 -1.21 10.04 -39.56 -0.40 -1.61 16 21 C -0.02 -0.21 9.55 -39.61 -0.38 -0.59 16 22 C -0.09 -1.23 6.87 -79.80 -0.55 -1.77 16 23 N 0.03 0.53 4.45 34.03 0.15 0.68 16 24 O -0.20 -3.55 18.45 -29.46 -0.54 -4.09 16 25 O -0.10 -2.22 17.24 -36.49 -0.63 -2.85 16 26 H 0.03 0.55 6.68 -51.93 -0.35 0.21 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.69 6.88 -51.93 -0.36 1.34 16 29 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 30 H 0.07 1.68 6.17 -51.93 -0.32 1.36 16 31 H 0.27 7.88 5.62 -40.82 -0.23 7.65 16 32 H 0.33 6.34 6.79 -39.29 -0.27 6.08 16 33 H 0.08 1.46 7.95 -51.93 -0.41 1.04 16 34 H 0.04 0.65 7.20 -51.92 -0.37 0.27 16 35 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 36 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 37 H 0.15 1.04 6.30 -52.49 -0.33 0.71 16 38 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.16 1.36 7.61 -52.48 -0.40 0.96 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -33.59 334.25 -8.84 -42.42 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.06 Total: 2.85 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.45 Total: -19.17 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.22 Total: -40.54 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.51 Total: -11.33 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.59 -8.84 -42.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521063468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.955 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds