Wall clock time and date at job start Tue Mar 31 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47134 * 2 1 4 4 H 1.09002 * 109.47603 * 175.06736 * 3 2 1 5 5 C 1.50708 * 109.46854 * 55.06937 * 3 2 1 6 6 H 1.07998 * 119.99639 * 245.69133 * 5 3 2 7 7 C 1.37873 * 120.00269 * 65.70025 * 5 3 2 8 8 N 1.31517 * 120.00021 * 5.49219 * 7 5 3 9 9 Si 1.86796 * 120.00073 * 185.49980 * 7 5 3 10 10 H 1.48498 * 109.47090 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46784 * 299.99242 * 9 7 5 12 12 H 1.48496 * 109.47487 * 59.99539 * 9 7 5 13 13 N 1.46894 * 109.47496 * 295.06921 * 3 2 1 14 14 C 1.46900 * 110.99903 * 279.82612 * 13 3 2 15 15 C 1.53002 * 109.47313 * 185.01569 * 14 13 3 16 16 O 1.42906 * 109.46801 * 65.00329 * 15 14 13 17 17 C 1.35896 * 117.00164 * 180.02562 * 16 15 14 18 18 C 1.38751 * 120.05361 * 359.97438 * 17 16 15 19 19 C 1.38126 * 119.94362 * 179.97438 * 18 17 16 20 20 C 1.38290 * 120.05526 * 0.02562 * 19 18 17 21 21 C 1.38241 * 120.11116 * 359.97438 * 20 19 18 22 22 C 1.38162 * 120.05525 * 359.75019 * 21 20 19 23 23 N 1.48013 * 120.02982 * 180.25379 * 22 21 20 24 24 O 1.21801 * 119.99551 * 0.27335 * 23 22 21 25 25 O 1.21797 * 120.00252 * 180.27299 * 23 22 21 26 26 H 1.09000 * 109.47146 * 65.00430 * 1 2 3 27 27 H 1.09002 * 109.47048 * 185.00693 * 1 2 3 28 28 H 1.09003 * 109.47168 * 305.00694 * 1 2 3 29 29 H 1.09002 * 109.47219 * 240.00531 * 2 1 3 30 30 H 1.09002 * 109.47111 * 120.00094 * 2 1 3 31 31 H 0.96999 * 119.99483 * 355.14922 * 8 7 5 32 32 H 1.00906 * 110.99962 * 43.77741 * 13 3 2 33 33 H 1.08993 * 109.47352 * 305.01909 * 14 13 3 34 34 H 1.09008 * 109.47064 * 65.02366 * 14 13 3 35 35 H 1.08993 * 109.47408 * 184.99853 * 15 14 13 36 36 H 1.08995 * 109.47370 * 305.00909 * 15 14 13 37 37 H 1.07995 * 120.03102 * 359.95420 * 18 17 16 38 38 H 1.07997 * 119.97590 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.94519 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.97388 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4403 2.1872 1.1649 6 1 0.7569 3.0048 0.9890 7 6 1.7644 1.8250 2.4552 8 7 2.6774 0.9031 2.6698 9 14 0.9064 2.6436 3.8985 10 1 1.4298 2.0812 5.1692 11 1 1.1620 4.1060 3.8615 12 1 -0.5549 2.3941 3.8121 13 7 1.6500 2.0998 -1.2544 14 6 2.5595 1.7303 -2.3472 15 6 2.1991 2.5276 -3.6024 16 8 2.4350 3.9174 -3.3678 17 6 2.1632 4.7705 -4.3901 18 6 1.6799 4.2800 -5.5947 19 6 1.4039 5.1491 -6.6321 20 6 1.6094 6.5072 -6.4711 21 6 2.0909 6.9984 -5.2720 22 6 2.3631 6.1337 -4.2294 23 7 2.8733 6.6609 -2.9438 24 8 3.0485 7.8580 -2.8032 25 8 3.1178 5.8977 -2.0267 26 1 -0.3633 0.4342 -0.9314 27 1 -0.3633 -1.0238 0.0897 28 1 -0.3633 0.5896 0.8418 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0721 0.4281 1.9218 32 1 0.6930 1.8858 -1.4925 33 1 3.5860 1.9540 -2.0570 34 1 2.4645 0.6643 -2.5543 35 1 2.8147 2.1904 -4.4363 36 1 1.1470 2.3730 -3.8414 37 1 1.5199 3.2194 -5.7212 38 1 1.0272 4.7679 -7.5697 39 1 1.3934 7.1851 -7.2836 40 1 2.2509 8.0594 -5.1488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521063468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:12 Heat of formation + Delta-G solvation = -36.589108 kcal Electronic energy + Delta-G solvation = -23754.666876 eV Core-core repulsion = 20151.353809 eV Total energy + Delta-G solvation = -3603.313067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.11929 -41.28412 -39.13317 -38.35126 -37.42903 -34.92390 -33.14903 -32.72784 -31.36028 -29.81911 -27.44739 -27.24025 -25.49585 -24.52973 -23.35474 -22.59833 -21.40685 -20.50303 -19.56961 -19.04313 -18.78664 -18.48473 -17.18611 -17.07956 -16.44897 -16.08711 -15.85308 -15.65363 -15.48930 -15.15341 -14.61764 -14.28838 -14.06391 -13.97045 -13.35626 -13.28091 -13.12899 -12.75922 -12.61297 -12.60508 -12.43721 -12.16980 -12.07786 -12.02320 -11.98010 -11.87957 -11.79386 -11.66090 -10.64483 -10.63149 -10.34017 -9.62846 -8.97625 -8.49112 -6.18058 -1.14051 0.04151 0.35687 0.54965 1.53566 1.61525 1.80422 1.90282 2.34329 2.60580 3.27095 3.33100 3.43414 3.57365 3.79395 3.92567 3.98430 4.07021 4.09956 4.30766 4.32120 4.36170 4.46547 4.53450 4.57183 4.75361 4.80195 4.92777 4.99224 5.13386 5.13510 5.22559 5.27819 5.41169 5.47641 5.58257 5.96734 6.11663 6.24389 6.55927 6.56411 6.81050 6.83178 7.56619 8.87920 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.004133 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.685784 B = 6773.792832 C = 7855.352679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.143 4.143 3 C 0.209 3.791 4 H -0.012 1.012 5 C -0.572 4.572 6 H 0.038 0.962 7 C -0.029 4.029 8 N -0.943 5.943 9 Si 1.106 2.894 10 H -0.284 1.284 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.680 5.680 14 C 0.056 3.944 15 C 0.062 3.938 16 O -0.296 6.296 17 C 0.179 3.821 18 C -0.217 4.217 19 C -0.005 4.005 20 C -0.147 4.147 21 C -0.029 4.029 22 C -0.119 4.119 23 N 0.037 4.963 24 O -0.183 6.183 25 O -0.208 6.208 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.259 0.741 32 H 0.334 0.666 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.175 0.825 38 H 0.192 0.808 39 H 0.188 0.812 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 5.063 -26.538 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.183 4.183 3 C 0.100 3.900 4 H 0.006 0.994 5 C -0.611 4.611 6 H 0.056 0.944 7 C -0.227 4.227 8 N -0.582 5.582 9 Si 0.929 3.071 10 H -0.210 1.210 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.312 5.312 14 C -0.074 4.074 15 C -0.012 4.012 16 O -0.206 6.206 17 C 0.128 3.872 18 C -0.236 4.236 19 C -0.023 4.023 20 C -0.166 4.166 21 C -0.048 4.048 22 C -0.204 4.204 23 N 0.545 4.455 24 O -0.397 6.397 25 O -0.413 6.413 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.193 0.807 38 H 0.209 0.791 39 H 0.205 0.795 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.199 5.457 -25.083 26.191 hybrid contribution 0.448 -0.947 -0.754 1.291 sum -4.751 4.510 -25.837 26.655 Atomic orbital electron populations 1.21495 0.94941 1.00242 1.01393 1.22099 0.97661 0.99385 0.99151 1.19082 0.93134 0.89693 0.88099 0.99369 1.22056 1.29158 1.17349 0.92534 0.94406 1.26904 0.95821 0.97144 1.02785 1.70913 1.26116 1.26019 1.35141 0.83063 0.75782 0.75080 0.73134 1.20970 1.21042 1.19291 1.60516 1.05443 1.62803 1.02437 1.22015 0.97621 0.96784 0.90965 1.23271 1.02723 0.76805 0.98414 1.86608 1.78892 1.19310 1.35791 1.19294 0.90679 0.87744 0.89445 1.21778 1.06703 1.03837 0.91279 1.22022 0.88931 0.92420 0.98927 1.21622 1.01263 0.97042 0.96647 1.21305 0.92378 1.00700 0.90435 1.21056 1.19895 0.92995 0.86496 1.43975 0.97752 1.00302 1.03478 1.94393 1.56882 0.99623 1.88819 1.94765 1.56663 1.55236 1.34632 0.92526 0.92997 0.93774 0.93469 0.94462 0.93036 0.84709 0.92987 0.91460 0.87794 0.89433 0.80735 0.79099 0.79479 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.38 71.98 0.68 -4.19 16 2 C -0.14 -6.39 5.45 30.59 0.17 -6.22 16 3 C 0.21 10.70 1.95 44.17 0.09 10.78 16 4 H -0.01 -0.68 7.32 -2.39 -0.02 -0.69 16 5 C -0.57 -33.35 7.18 25.60 0.18 -33.16 16 6 H 0.04 2.28 7.82 -2.91 -0.02 2.26 16 7 C -0.03 -1.71 5.29 84.65 0.45 -1.26 16 8 N -0.94 -58.75 13.21 21.45 0.28 -58.46 16 9 Si 1.11 53.48 29.91 68.60 2.05 55.53 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 N -0.68 -29.11 6.14 -495.45 -3.04 -32.16 16 14 C 0.06 1.85 5.86 86.30 0.51 2.36 16 15 C 0.06 1.51 5.06 71.98 0.36 1.87 16 16 O -0.30 -9.80 8.10 -71.23 -0.58 -10.37 16 17 C 0.18 4.65 6.67 22.51 0.15 4.80 16 18 C -0.22 -3.07 9.04 22.37 0.20 -2.87 16 19 C -0.01 -0.04 10.04 22.26 0.22 0.19 16 20 C -0.15 -1.29 10.04 22.28 0.22 -1.07 16 21 C -0.03 -0.53 9.55 22.25 0.21 -0.32 16 22 C -0.12 -3.40 6.87 36.47 0.25 -3.15 16 23 N 0.04 1.44 4.45 -46.24 -0.21 1.23 16 24 O -0.18 -6.86 18.45 18.88 0.35 -6.51 16 25 O -0.21 -9.90 17.24 25.61 0.44 -9.46 16 26 H 0.06 1.91 6.68 -2.39 -0.02 1.90 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 2.00 6.88 -2.39 -0.02 1.98 16 29 H 0.05 1.81 7.13 -2.39 -0.02 1.80 16 30 H 0.04 1.89 6.17 -2.39 -0.01 1.87 16 31 H 0.26 16.12 5.62 -92.71 -0.52 15.60 16 32 H 0.33 12.94 6.79 -89.69 -0.61 12.33 16 33 H 0.05 2.00 7.95 -2.39 -0.02 1.98 16 34 H 0.07 1.90 7.20 -2.38 -0.02 1.88 16 35 H 0.10 1.68 7.66 -2.39 -0.02 1.66 16 36 H 0.09 1.69 7.66 -2.39 -0.02 1.67 16 37 H 0.18 1.48 6.30 -2.91 -0.02 1.46 16 38 H 0.19 -0.37 8.06 -2.91 -0.02 -0.39 16 39 H 0.19 0.12 8.06 -2.91 -0.02 0.09 16 40 H 0.16 2.55 7.61 -2.91 -0.02 2.53 16 Total: -1.00 -83.36 334.25 3.70 -79.66 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.71 Total: 12.78 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 3.69 Total: -32.23 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -2.96 Total: -89.39 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: 0.21 Total: -26.35 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 2.05 Total: 55.53 kcal Total: -83.36 3.70 -79.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521063468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.069 kcal (2) G-P(sol) polarization free energy of solvation -83.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds