Wall clock time and date at job start Tue Mar 31 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47115 * 2 1 4 4 H 1.08997 * 109.46791 * 54.39350 * 3 2 1 5 5 C 1.50696 * 109.47084 * 174.39818 * 3 2 1 6 6 H 1.08003 * 120.00124 * 120.00126 * 5 3 2 7 7 C 1.37881 * 119.99788 * 299.99418 * 5 3 2 8 8 N 1.31507 * 119.99957 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99906 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47287 * 120.00346 * 9 7 5 12 12 H 1.48503 * 109.47189 * 240.00369 * 9 7 5 13 13 N 1.46908 * 109.46879 * 294.39658 * 3 2 1 14 14 C 1.46903 * 110.99814 * 152.86428 * 13 3 2 15 15 C 1.52995 * 109.46963 * 175.20473 * 14 13 3 16 16 O 1.42904 * 109.47373 * 64.99970 * 15 14 13 17 17 C 1.35897 * 117.00081 * 180.02562 * 16 15 14 18 18 C 1.38752 * 120.05522 * 359.97438 * 17 16 15 19 19 C 1.38121 * 119.94529 * 180.02562 * 18 17 16 20 20 C 1.38292 * 120.05396 * 0.02562 * 19 18 17 21 21 C 1.38239 * 120.11101 * 359.97438 * 20 19 18 22 22 C 1.38170 * 120.05712 * 0.02562 * 21 20 19 23 23 N 1.48003 * 120.02594 * 180.02562 * 22 21 20 24 24 O 1.21795 * 120.00275 * 359.97284 * 23 22 21 25 25 O 1.21807 * 119.99613 * 179.97438 * 23 22 21 26 26 H 1.08993 * 109.47331 * 179.77656 * 1 2 3 27 27 H 1.09002 * 109.46871 * 299.77523 * 1 2 3 28 28 H 1.09008 * 109.47308 * 59.76968 * 1 2 3 29 29 H 1.09003 * 109.47066 * 240.00564 * 2 1 3 30 30 H 1.08993 * 109.47435 * 119.99750 * 2 1 3 31 31 H 0.97008 * 120.00265 * 179.97438 * 8 7 5 32 32 H 1.00894 * 110.99812 * 28.90736 * 13 3 2 33 33 H 1.09000 * 109.46791 * 55.20163 * 14 13 3 34 34 H 1.09007 * 109.46856 * 295.20541 * 14 13 3 35 35 H 1.09006 * 109.47198 * 304.99874 * 15 14 13 36 36 H 1.09002 * 109.46941 * 185.00115 * 15 14 13 37 37 H 1.08000 * 120.03110 * 0.02562 * 18 17 16 38 38 H 1.07999 * 119.97351 * 179.72530 * 19 18 17 39 39 H 1.08001 * 119.94507 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.97313 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5970 1.9845 0.8355 5 6 3.5406 1.4448 0.1387 6 1 4.1536 1.8867 -0.6330 7 6 4.1309 0.8829 1.2508 8 7 3.3845 0.3445 2.1902 9 14 5.9909 0.8863 1.4231 10 1 6.5965 1.5481 0.2396 11 1 6.3728 1.6261 2.6527 12 1 6.4822 -0.5122 1.5141 13 7 1.6638 2.0949 -1.2614 14 6 1.5339 3.5474 -1.0846 15 6 1.2599 4.2036 -2.4392 16 8 -0.0088 3.7678 -2.9318 17 6 -0.4062 4.2606 -4.1343 18 6 0.4081 5.1460 -4.8258 19 6 0.0017 5.6459 -6.0476 20 6 -1.2159 5.2650 -6.5814 21 6 -2.0289 4.3830 -5.8944 22 6 -1.6269 3.8801 -4.6718 23 7 -2.4977 2.9354 -3.9371 24 8 -3.5693 2.6014 -4.4098 25 8 -2.1425 2.4921 -2.8596 26 1 -0.3633 -1.0276 -0.0040 27 1 -0.3633 0.5104 0.8920 28 1 -0.3634 0.5174 -0.8880 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.7999 -0.0512 2.9725 32 1 0.8141 1.6985 -1.6340 33 1 2.4585 3.9468 -0.6677 34 1 0.7081 3.7583 -0.4050 35 1 2.0407 3.9198 -3.1450 36 1 1.2518 5.2874 -2.3229 37 1 1.3589 5.4441 -4.4092 38 1 0.6331 6.3385 -6.5842 39 1 -1.5321 5.6573 -7.5367 40 1 -2.9795 4.0874 -6.3131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521063469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:15 Heat of formation + Delta-G solvation = -17.373013 kcal Electronic energy + Delta-G solvation = -23706.661487 eV Core-core repulsion = 20104.181692 eV Total energy + Delta-G solvation = -3602.479795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04672 -40.37435 -38.10766 -36.34023 -36.12222 -32.91900 -32.20642 -31.40371 -30.48619 -28.34601 -26.41502 -26.10835 -23.65924 -22.62517 -22.48988 -21.12073 -19.62713 -19.39821 -18.47497 -18.01218 -17.38900 -16.41224 -16.18636 -15.94559 -15.66085 -14.99481 -14.70941 -14.46710 -13.89550 -13.77421 -13.14298 -12.81532 -12.57202 -12.34471 -12.13064 -11.89362 -11.58431 -11.35155 -11.20815 -11.12872 -10.98757 -10.88812 -10.86818 -10.76946 -10.56788 -9.93232 -9.91743 -9.60246 -9.50850 -9.04245 -8.85599 -8.32192 -7.22742 -5.94592 -3.99381 -0.14994 0.73802 1.34679 1.51205 2.78743 3.03276 3.31108 3.39302 3.43125 4.08808 4.22990 4.44960 4.51476 4.55975 4.72755 4.92290 5.04442 5.13459 5.33961 5.40356 5.42099 5.55102 5.75199 5.79000 5.94325 6.17137 6.31418 6.36690 6.38801 6.48979 6.59468 6.96648 7.02398 7.15866 7.26114 7.54186 7.83678 7.84814 7.93939 8.31358 8.44212 8.78885 9.08306 9.65484 11.10540 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003768 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.062785 B = 7429.931144 C = 8491.697031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.688 5.688 14 C 0.071 3.929 15 C 0.053 3.947 16 O -0.274 6.274 17 C 0.209 3.791 18 C -0.216 4.216 19 C -0.028 4.028 20 C -0.167 4.167 21 C -0.021 4.021 22 C -0.089 4.089 23 N 0.035 4.965 24 O -0.192 6.192 25 O -0.125 6.125 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.259 0.741 32 H 0.329 0.671 33 H 0.097 0.903 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 12.211 -16.269 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C 0.111 3.889 4 H 0.022 0.978 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.320 5.320 14 C -0.059 4.059 15 C -0.022 4.022 16 O -0.183 6.183 17 C 0.158 3.842 18 C -0.235 4.235 19 C -0.046 4.046 20 C -0.186 4.186 21 C -0.040 4.040 22 C -0.174 4.174 23 N 0.553 4.447 24 O -0.398 6.398 25 O -0.349 6.349 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.170 0.830 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.695 12.459 -16.550 21.770 hybrid contribution 0.156 -0.087 0.779 0.800 sum -6.540 12.372 -15.770 21.084 Atomic orbital electron populations 1.21884 0.99137 0.99640 1.00239 1.21756 0.91610 1.00107 1.02862 1.19160 0.95300 0.90258 0.84232 0.97848 1.21253 0.91304 1.36625 1.04156 0.92119 1.24969 0.98002 0.95685 0.95914 1.69891 1.34542 1.39378 1.09558 0.86512 0.85911 0.77621 0.77732 1.19897 1.21284 1.21143 1.60757 1.38162 1.00847 1.32268 1.21882 1.00889 0.91987 0.91176 1.23467 0.81830 0.98397 0.98457 1.86460 1.38287 1.64184 1.29406 1.18796 0.90005 0.89396 0.86011 1.21437 1.02179 1.02018 0.97894 1.21403 0.94990 0.94922 0.93264 1.21056 0.95124 1.00609 1.01784 1.20927 1.00347 0.92686 0.90064 1.20583 0.93522 1.05145 0.98121 1.43329 1.00608 0.99922 1.00831 1.94492 1.10075 1.63655 1.71576 1.94663 1.77573 1.55536 1.07091 0.94518 0.93921 0.93861 0.94245 0.88357 0.93134 0.85231 0.88456 0.95150 0.90395 0.91697 0.82999 0.83961 0.83767 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.76 37.16 0.36 -2.82 16 2 C -0.12 -3.04 5.35 -26.73 -0.14 -3.18 16 3 C 0.22 5.44 2.02 -68.86 -0.14 5.30 16 4 H 0.00 0.11 7.82 -51.93 -0.41 -0.30 16 5 C -0.49 -13.46 8.65 -34.44 -0.30 -13.76 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.89 -25.45 11.29 55.43 0.63 -24.83 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.69 -14.59 6.28 -107.94 -0.68 -15.27 16 14 C 0.07 1.25 5.86 -3.83 -0.02 1.23 16 15 C 0.05 0.72 5.08 37.15 0.19 0.90 16 16 O -0.27 -4.13 7.75 -41.54 -0.32 -4.45 16 17 C 0.21 2.66 6.67 -39.22 -0.26 2.40 16 18 C -0.22 -1.96 9.04 -39.43 -0.36 -2.32 16 19 C -0.03 -0.18 10.04 -39.60 -0.40 -0.58 16 20 C -0.17 -1.12 10.04 -39.56 -0.40 -1.51 16 21 C -0.02 -0.20 9.55 -39.61 -0.38 -0.58 16 22 C -0.09 -1.17 6.87 -79.81 -0.55 -1.71 16 23 N 0.04 0.57 4.45 34.03 0.15 0.73 16 24 O -0.19 -3.08 18.45 -29.46 -0.54 -3.63 16 25 O -0.13 -2.31 17.24 -36.49 -0.63 -2.94 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.87 6.46 -51.92 -0.34 0.53 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.33 6.91 6.17 -39.29 -0.24 6.66 16 33 H 0.10 1.76 8.00 -51.93 -0.42 1.34 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.00 7.66 -51.93 -0.40 0.60 16 36 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 37 H 0.15 1.12 6.30 -52.49 -0.33 0.79 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.16 1.22 7.61 -52.48 -0.40 0.82 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -31.36 338.98 -9.11 -40.46 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.32 Total: 3.83 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.48 Total: -15.23 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.10 Total: -39.37 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.49 Total: -11.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.36 -9.11 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521063469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.089 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds