Wall clock time and date at job start Tue Mar 31 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47115 * 2 1 4 4 H 1.08997 * 109.46791 * 54.39350 * 3 2 1 5 5 C 1.50696 * 109.47084 * 174.39818 * 3 2 1 6 6 H 1.08003 * 120.00124 * 120.00126 * 5 3 2 7 7 C 1.37881 * 119.99788 * 299.99418 * 5 3 2 8 8 N 1.31507 * 119.99957 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99906 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47287 * 120.00346 * 9 7 5 12 12 H 1.48503 * 109.47189 * 240.00369 * 9 7 5 13 13 N 1.46908 * 109.46879 * 294.39658 * 3 2 1 14 14 C 1.46903 * 110.99814 * 152.86428 * 13 3 2 15 15 C 1.52995 * 109.46963 * 175.20473 * 14 13 3 16 16 O 1.42904 * 109.47373 * 64.99970 * 15 14 13 17 17 C 1.35897 * 117.00081 * 180.02562 * 16 15 14 18 18 C 1.38752 * 120.05522 * 359.97438 * 17 16 15 19 19 C 1.38121 * 119.94529 * 180.02562 * 18 17 16 20 20 C 1.38292 * 120.05396 * 0.02562 * 19 18 17 21 21 C 1.38239 * 120.11101 * 359.97438 * 20 19 18 22 22 C 1.38170 * 120.05712 * 0.02562 * 21 20 19 23 23 N 1.48003 * 120.02594 * 180.02562 * 22 21 20 24 24 O 1.21795 * 120.00275 * 359.97284 * 23 22 21 25 25 O 1.21807 * 119.99613 * 179.97438 * 23 22 21 26 26 H 1.08993 * 109.47331 * 179.77656 * 1 2 3 27 27 H 1.09002 * 109.46871 * 299.77523 * 1 2 3 28 28 H 1.09008 * 109.47308 * 59.76968 * 1 2 3 29 29 H 1.09003 * 109.47066 * 240.00564 * 2 1 3 30 30 H 1.08993 * 109.47435 * 119.99750 * 2 1 3 31 31 H 0.97008 * 120.00265 * 179.97438 * 8 7 5 32 32 H 1.00894 * 110.99812 * 28.90736 * 13 3 2 33 33 H 1.09000 * 109.46791 * 55.20163 * 14 13 3 34 34 H 1.09007 * 109.46856 * 295.20541 * 14 13 3 35 35 H 1.09006 * 109.47198 * 304.99874 * 15 14 13 36 36 H 1.09002 * 109.46941 * 185.00115 * 15 14 13 37 37 H 1.08000 * 120.03110 * 0.02562 * 18 17 16 38 38 H 1.07999 * 119.97351 * 179.72530 * 19 18 17 39 39 H 1.08001 * 119.94507 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.97313 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5970 1.9845 0.8355 5 6 3.5406 1.4448 0.1387 6 1 4.1536 1.8867 -0.6330 7 6 4.1309 0.8829 1.2508 8 7 3.3845 0.3445 2.1902 9 14 5.9909 0.8863 1.4231 10 1 6.5965 1.5481 0.2396 11 1 6.3728 1.6261 2.6527 12 1 6.4822 -0.5122 1.5141 13 7 1.6638 2.0949 -1.2614 14 6 1.5339 3.5474 -1.0846 15 6 1.2599 4.2036 -2.4392 16 8 -0.0088 3.7678 -2.9318 17 6 -0.4062 4.2606 -4.1343 18 6 0.4081 5.1460 -4.8258 19 6 0.0017 5.6459 -6.0476 20 6 -1.2159 5.2650 -6.5814 21 6 -2.0289 4.3830 -5.8944 22 6 -1.6269 3.8801 -4.6718 23 7 -2.4977 2.9354 -3.9371 24 8 -3.5693 2.6014 -4.4098 25 8 -2.1425 2.4921 -2.8596 26 1 -0.3633 -1.0276 -0.0040 27 1 -0.3633 0.5104 0.8920 28 1 -0.3634 0.5174 -0.8880 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.7999 -0.0512 2.9725 32 1 0.8141 1.6985 -1.6340 33 1 2.4585 3.9468 -0.6677 34 1 0.7081 3.7583 -0.4050 35 1 2.0407 3.9198 -3.1450 36 1 1.2518 5.2874 -2.3229 37 1 1.3589 5.4441 -4.4092 38 1 0.6331 6.3385 -6.5842 39 1 -1.5321 5.6573 -7.5367 40 1 -2.9795 4.0874 -6.3131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521063469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:15 Heat of formation + Delta-G solvation = -36.361932 kcal Electronic energy + Delta-G solvation = -23707.484909 eV Core-core repulsion = 20104.181692 eV Total energy + Delta-G solvation = -3603.303216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.14397 -41.29483 -39.04045 -37.95905 -37.44065 -34.65584 -33.35186 -32.91336 -31.37529 -29.84780 -27.98649 -27.39701 -25.00768 -24.15506 -23.37635 -22.33584 -21.45650 -20.50210 -19.61917 -18.90282 -18.52806 -18.37627 -17.24628 -17.08377 -16.67326 -16.27138 -16.08309 -15.64238 -15.51473 -14.96207 -14.55430 -14.24138 -13.84125 -13.51891 -13.36256 -13.19475 -12.98800 -12.89383 -12.67343 -12.60696 -12.48325 -12.43540 -12.18668 -12.09222 -11.97805 -11.93589 -11.54336 -11.36747 -11.02288 -10.62970 -10.42614 -9.63877 -9.04222 -8.04850 -6.17931 -1.12371 0.04733 0.36920 0.52389 1.42400 1.44363 1.56049 1.86820 2.35130 2.45338 3.19905 3.34083 3.51550 3.59789 3.81965 3.99177 4.01995 4.10055 4.21858 4.39696 4.47300 4.49909 4.57001 4.70972 4.74446 4.79464 4.89840 5.00868 5.11079 5.15664 5.23238 5.27963 5.35318 5.47411 5.57306 5.75039 5.88091 6.04563 6.35389 6.49137 6.58595 6.92126 6.96388 7.51168 8.99010 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003768 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.062785 B = 7429.931144 C = 8491.697031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.223 3.777 4 H -0.031 1.031 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.686 5.686 14 C 0.068 3.932 15 C 0.065 3.935 16 O -0.306 6.306 17 C 0.181 3.819 18 C -0.217 4.217 19 C -0.007 4.007 20 C -0.146 4.146 21 C -0.028 4.028 22 C -0.116 4.116 23 N 0.039 4.961 24 O -0.184 6.184 25 O -0.201 6.201 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.091 0.909 34 H 0.017 0.983 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.171 0.829 38 H 0.189 0.811 39 H 0.187 0.813 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 14.585 -19.580 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.115 3.885 4 H -0.013 1.013 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.562 5.562 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.318 5.318 14 C -0.062 4.062 15 C -0.010 4.010 16 O -0.217 6.217 17 C 0.132 3.868 18 C -0.236 4.236 19 C -0.025 4.025 20 C -0.165 4.165 21 C -0.047 4.047 22 C -0.201 4.201 23 N 0.548 4.452 24 O -0.397 6.397 25 O -0.408 6.408 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.035 0.965 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.188 0.812 38 H 0.206 0.794 39 H 0.205 0.795 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.677 14.817 -19.777 25.356 hybrid contribution -0.217 -0.680 1.577 1.731 sum -5.895 14.137 -18.200 23.788 Atomic orbital electron populations 1.21736 0.96750 1.00941 1.00190 1.21604 0.93713 0.99411 1.01109 1.18950 0.94376 0.90498 0.84705 1.01320 1.21496 0.92361 1.36741 1.04251 0.92559 1.25757 1.02561 0.95265 0.95556 1.70032 1.36349 1.39879 1.09955 0.85465 0.80374 0.77580 0.77905 1.19051 1.20769 1.20938 1.60690 1.38205 1.02845 1.30047 1.21911 1.00148 0.90011 0.94131 1.23272 0.82036 0.99752 0.95898 1.86397 1.38592 1.65479 1.31200 1.19160 0.90743 0.91094 0.85838 1.21776 1.02256 1.00941 0.98645 1.22002 0.94989 0.93695 0.91800 1.21621 0.94166 0.98190 1.02487 1.21304 1.01512 0.93114 0.88783 1.20984 0.93737 1.05907 0.99509 1.43832 1.00738 0.99988 1.00604 1.94425 1.10812 1.63443 1.71061 1.94658 1.78462 1.58511 1.09142 0.92500 0.94590 0.93218 0.94708 0.91131 0.93109 0.85250 0.89082 0.96454 0.89497 0.88100 0.81197 0.79418 0.79530 0.81518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.76 71.98 0.70 -5.34 16 2 C -0.12 -6.08 5.35 30.60 0.16 -5.91 16 3 C 0.22 11.65 2.02 44.17 0.09 11.73 16 4 H -0.03 -1.79 7.82 -2.39 -0.02 -1.81 16 5 C -0.51 -28.47 8.65 25.60 0.22 -28.24 16 6 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.37 5.29 84.66 0.45 0.81 16 8 N -0.92 -53.97 11.29 21.45 0.24 -53.73 16 9 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.69 -30.24 6.28 -495.42 -3.11 -33.34 16 14 C 0.07 2.48 5.86 86.30 0.51 2.99 16 15 C 0.06 1.70 5.08 71.98 0.37 2.07 16 16 O -0.31 -9.40 7.75 -71.24 -0.55 -9.95 16 17 C 0.18 4.45 6.67 22.50 0.15 4.60 16 18 C -0.22 -3.17 9.04 22.36 0.20 -2.97 16 19 C -0.01 -0.05 10.04 22.25 0.22 0.17 16 20 C -0.15 -1.18 10.04 22.28 0.22 -0.95 16 21 C -0.03 -0.46 9.55 22.25 0.21 -0.24 16 22 C -0.12 -2.98 6.87 36.47 0.25 -2.73 16 23 N 0.04 1.33 4.45 -46.24 -0.21 1.13 16 24 O -0.18 -6.09 18.45 18.89 0.35 -5.74 16 25 O -0.20 -8.03 17.24 25.60 0.44 -7.59 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 2.09 6.46 -2.38 -0.02 2.07 16 29 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 3.99 5.94 -2.39 -0.01 3.97 16 31 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 32 H 0.33 14.48 6.17 -89.70 -0.55 13.93 16 33 H 0.09 3.39 8.00 -2.39 -0.02 3.37 16 34 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.09 2.11 7.66 -2.38 -0.02 2.09 16 36 H 0.10 1.90 7.66 -2.39 -0.02 1.88 16 37 H 0.17 1.80 6.30 -2.91 -0.02 1.78 16 38 H 0.19 -0.18 8.06 -2.91 -0.02 -0.20 16 39 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 40 H 0.17 2.21 7.61 -2.91 -0.02 2.18 16 Total: -1.00 -73.59 338.98 3.45 -70.14 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.50 Total: 17.10 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 3.76 Total: -24.03 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -3.07 Total: -85.95 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.24 Total: -23.28 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -73.59 3.45 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521063469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.774 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds