Wall clock time and date at job start Tue Mar 31 2020 07:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34879 * 116.99753 * 2 1 4 4 O 1.21596 * 120.00306 * 359.97438 * 3 2 1 5 5 C 1.46634 * 119.99519 * 180.02562 * 3 2 1 6 6 C 1.36446 * 125.85361 * 180.25001 * 5 3 2 7 7 C 1.41260 * 107.00242 * 180.13286 * 6 5 3 8 8 C 1.47397 * 126.45250 * 179.89591 * 7 6 5 9 9 O 1.21605 * 120.00430 * 8.13833 * 8 7 6 10 10 N 1.34778 * 119.99707 * 188.13374 * 8 7 6 11 11 C 1.46500 * 119.99854 * 4.89947 * 10 8 7 12 12 C 1.50701 * 109.47069 * 271.41511 * 11 10 8 13 13 H 1.07999 * 120.00082 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00217 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99758 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00067 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47225 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46929 * 119.99812 * 16 14 12 19 19 H 1.48499 * 109.47366 * 239.99553 * 16 14 12 20 20 C 1.46496 * 119.99799 * 184.89989 * 10 8 7 21 21 C 1.52998 * 109.47124 * 125.74651 * 20 10 8 22 22 C 1.53004 * 109.47080 * 245.74220 * 20 10 8 23 23 C 1.38245 * 107.08954 * 359.63115 * 7 6 5 24 24 N 1.34240 * 108.41325 * 0.22823 * 23 7 6 25 25 H 0.96995 * 125.39487 * 179.97438 * 24 23 7 26 26 H 1.09008 * 109.47106 * 299.99891 * 1 2 3 27 27 H 1.08998 * 109.47437 * 60.00359 * 1 2 3 28 28 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.07997 * 126.50331 * 359.97438 * 6 5 3 30 30 H 1.09002 * 109.46874 * 151.42223 * 11 10 8 31 31 H 1.08999 * 109.47230 * 31.41601 * 11 10 8 32 32 H 0.96997 * 119.99907 * 180.02562 * 15 14 12 33 33 H 1.08997 * 109.47291 * 5.74314 * 20 10 8 34 34 H 1.09002 * 109.47377 * 60.00128 * 21 20 10 35 35 H 1.09004 * 109.46903 * 179.97438 * 21 20 10 36 36 H 1.09004 * 109.47291 * 299.99631 * 21 20 10 37 37 H 1.08998 * 109.46917 * 60.00136 * 22 20 10 38 38 H 1.09004 * 109.47392 * 179.97438 * 22 20 10 39 39 H 1.08997 * 109.47135 * 300.00189 * 22 20 10 40 40 H 1.07995 * 125.79270 * 180.26094 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2216 -0.0005 5 6 3.5286 1.2785 -0.0006 6 6 4.2688 2.4247 0.0042 7 6 5.6277 2.0388 -0.0015 8 6 6.7940 2.9401 -0.0015 9 8 6.6383 4.1362 0.1530 10 7 8.0332 2.4384 -0.1725 11 6 8.2130 1.0143 -0.4652 12 6 8.3201 0.2455 0.8265 13 1 8.2599 0.7657 1.7710 14 6 8.4951 -1.1219 0.8025 15 7 8.5679 -1.7554 -0.3478 16 14 8.6286 -2.0747 2.4036 17 1 8.5160 -1.1362 3.5490 18 1 7.5349 -3.0767 2.4760 19 1 9.9402 -2.7688 2.4587 20 6 9.2004 3.3173 -0.0655 21 6 10.1799 2.7419 0.9593 22 6 9.8890 3.4188 -1.4281 23 6 5.6576 0.6567 -0.0012 24 7 4.3933 0.2053 -0.0006 25 1 4.1301 -0.7283 -0.0006 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.8882 3.4353 0.0087 30 1 9.1240 0.8752 -1.0474 31 1 7.3583 0.6498 -1.0352 32 1 8.6906 -2.7175 -0.3647 33 1 8.8805 4.3089 0.2546 34 1 10.5000 1.7503 0.6391 35 1 11.0486 3.3956 1.0385 36 1 9.6894 2.6696 1.9300 37 1 9.1912 3.8287 -2.1582 38 1 10.7572 4.0731 -1.3487 39 1 10.2089 2.4272 -1.7482 40 1 6.5470 0.0441 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550353967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:06 Heat of formation + Delta-G solvation = -65.548478 kcal Electronic energy + Delta-G solvation = -24220.739041 eV Core-core repulsion = 20616.170201 eV Total energy + Delta-G solvation = -3604.568840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20395 -39.82520 -38.61917 -36.32626 -35.73167 -33.46533 -31.76015 -30.56983 -29.43363 -27.65408 -27.32397 -26.53803 -23.39288 -23.21805 -22.35781 -20.24012 -19.64339 -19.04499 -17.58614 -16.97991 -16.72113 -16.34414 -16.19545 -15.11739 -14.97827 -14.52954 -14.31359 -13.74864 -13.53208 -13.49876 -13.07725 -12.94846 -12.83074 -12.50921 -12.28082 -12.20626 -12.10118 -11.67351 -11.55250 -11.13698 -11.10121 -10.84591 -10.76835 -10.67304 -10.48793 -10.15385 -9.99454 -9.76082 -9.09886 -8.80121 -8.68914 -7.89953 -7.68121 -6.41870 -4.49858 1.53715 2.49965 2.70996 3.06723 3.18355 3.23551 3.29007 3.49622 3.99667 4.15640 4.30173 4.87807 5.00048 5.01875 5.08879 5.40550 5.42822 5.58017 5.72949 5.75606 5.87709 5.97031 6.12278 6.17460 6.21861 6.36749 6.44729 6.46552 6.56677 6.70806 6.78410 6.95641 7.03475 7.10599 7.17298 7.52567 7.63329 7.75430 7.83663 7.87701 8.36701 8.66119 9.10457 9.21385 10.60586 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.005710 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.006168 B = 4902.106220 C = 6527.445038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.366 6.366 3 C 0.540 3.460 4 O -0.509 6.509 5 C -0.087 4.087 6 C -0.031 4.031 7 C -0.248 4.248 8 C 0.591 3.409 9 O -0.578 6.578 10 N -0.590 5.590 11 C 0.217 3.783 12 C -0.536 4.536 13 H 0.071 0.929 14 C 0.062 3.938 15 N -0.885 5.885 16 Si 0.892 3.108 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.139 3.861 21 C -0.152 4.152 22 C -0.158 4.158 23 C 0.103 3.897 24 N -0.527 5.527 25 H 0.423 0.577 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.152 0.848 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.269 0.731 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 -0.469 -0.835 6.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.283 6.283 3 C 0.387 3.613 4 O -0.398 6.398 5 C -0.193 4.193 6 C -0.057 4.057 7 C -0.256 4.256 8 C 0.381 3.619 9 O -0.461 6.461 10 N -0.321 5.321 11 C 0.096 3.904 12 C -0.574 4.574 13 H 0.089 0.911 14 C -0.142 4.142 15 N -0.523 5.523 16 Si 0.719 3.281 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.206 1.206 20 C 0.035 3.965 21 C -0.210 4.210 22 C -0.216 4.216 23 C -0.039 4.039 24 N -0.121 5.121 25 H 0.261 0.739 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.170 0.830 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -6.476 0.124 -0.849 6.533 hybrid contribution -0.214 -1.189 0.867 1.487 sum -6.691 -1.065 0.018 6.775 Atomic orbital electron populations 1.23218 0.76146 1.03471 1.02581 1.86570 1.23569 1.33130 1.85076 1.19918 0.87151 0.81446 0.72814 1.90867 1.65600 1.35799 1.47517 1.18792 0.86321 0.88664 1.25557 1.21029 0.91171 0.96917 0.96594 1.19620 0.93320 0.92845 1.19774 1.17313 0.82435 0.86460 0.75668 1.90653 1.86101 1.15859 1.53475 1.48011 1.04247 1.11153 1.68641 1.19910 0.98916 0.75030 0.96500 1.21686 1.50127 0.91966 0.93642 0.91129 1.25036 0.94727 0.97683 0.96740 1.69946 1.48144 1.09779 1.24416 0.86498 0.78124 0.79928 0.83537 1.19340 1.20728 1.20585 1.20826 0.85966 0.94646 0.95073 1.22081 0.97745 1.01969 0.99178 1.22131 0.99984 1.02079 0.97455 1.25913 0.88165 0.96850 0.92946 1.42059 1.06279 1.08675 1.55137 0.73895 0.91899 0.91882 0.88214 0.83000 0.93946 0.93468 0.92103 0.89578 0.90665 0.93361 0.92598 0.92941 0.92440 0.91976 0.73271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 16 2 O -0.37 -5.01 10.58 -40.98 -0.43 -5.44 16 3 C 0.54 8.89 7.93 34.12 0.27 9.16 16 4 O -0.51 -9.34 16.65 -19.34 -0.32 -9.66 16 5 C -0.09 -1.51 7.02 -82.43 -0.58 -2.09 16 6 C -0.03 -0.59 10.38 -39.08 -0.41 -0.99 16 7 C -0.25 -5.08 5.95 -105.02 -0.62 -5.70 16 8 C 0.59 13.06 7.65 -12.53 -0.10 12.96 16 9 O -0.58 -13.91 16.28 5.27 0.09 -13.83 16 10 N -0.59 -12.20 2.38 -168.74 -0.40 -12.60 16 11 C 0.22 4.64 3.90 -5.19 -0.02 4.62 16 12 C -0.54 -12.05 5.72 -34.44 -0.20 -12.25 16 13 H 0.07 1.67 7.73 -52.49 -0.41 1.27 16 14 C 0.06 1.42 4.90 -17.82 -0.09 1.33 16 15 N -0.89 -21.03 13.29 55.43 0.74 -20.29 16 16 Si 0.89 18.41 29.54 -169.99 -5.02 13.39 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 C 0.14 2.54 3.22 -67.93 -0.22 2.32 16 21 C -0.15 -2.61 8.43 37.16 0.31 -2.30 16 22 C -0.16 -2.52 9.27 37.16 0.34 -2.17 16 23 C 0.10 1.97 9.32 -16.50 -0.15 1.82 16 24 N -0.53 -8.64 6.01 -9.32 -0.06 -8.70 16 25 H 0.42 5.71 8.96 -40.82 -0.37 5.34 16 26 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 30 H 0.04 0.95 6.67 -51.93 -0.35 0.61 16 31 H 0.05 1.04 4.86 -51.93 -0.25 0.79 16 32 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 33 H 0.09 1.65 6.95 -51.93 -0.36 1.29 16 34 H 0.07 1.40 6.97 -51.93 -0.36 1.04 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.01 6.91 -51.93 -0.36 0.66 16 40 H 0.25 5.17 2.77 -52.49 -0.15 5.02 16 LS Contribution 335.44 15.07 5.05 5.05 Total: -1.00 -27.65 335.44 -5.85 -33.50 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.11 Total: 10.41 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.39 Total: 8.16 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.28 Total: -41.59 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.67 Total: -28.93 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.65 -5.85 -33.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550353967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.046 kcal (2) G-P(sol) polarization free energy of solvation -27.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds