Wall clock time and date at job start Tue Mar 31 2020 07:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34879 * 116.99753 * 2 1 4 4 O 1.21596 * 120.00306 * 359.97438 * 3 2 1 5 5 C 1.46634 * 119.99519 * 180.02562 * 3 2 1 6 6 C 1.36446 * 125.85361 * 180.25001 * 5 3 2 7 7 C 1.41260 * 107.00242 * 180.13286 * 6 5 3 8 8 C 1.47397 * 126.45250 * 179.89591 * 7 6 5 9 9 O 1.21605 * 120.00430 * 8.13833 * 8 7 6 10 10 N 1.34778 * 119.99707 * 188.13374 * 8 7 6 11 11 C 1.46500 * 119.99854 * 4.89947 * 10 8 7 12 12 C 1.50701 * 109.47069 * 271.41511 * 11 10 8 13 13 H 1.07999 * 120.00082 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00217 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99758 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00067 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47225 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46929 * 119.99812 * 16 14 12 19 19 H 1.48499 * 109.47366 * 239.99553 * 16 14 12 20 20 C 1.46496 * 119.99799 * 184.89989 * 10 8 7 21 21 C 1.52998 * 109.47124 * 125.74651 * 20 10 8 22 22 C 1.53004 * 109.47080 * 245.74220 * 20 10 8 23 23 C 1.38245 * 107.08954 * 359.63115 * 7 6 5 24 24 N 1.34240 * 108.41325 * 0.22823 * 23 7 6 25 25 H 0.96995 * 125.39487 * 179.97438 * 24 23 7 26 26 H 1.09008 * 109.47106 * 299.99891 * 1 2 3 27 27 H 1.08998 * 109.47437 * 60.00359 * 1 2 3 28 28 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.07997 * 126.50331 * 359.97438 * 6 5 3 30 30 H 1.09002 * 109.46874 * 151.42223 * 11 10 8 31 31 H 1.08999 * 109.47230 * 31.41601 * 11 10 8 32 32 H 0.96997 * 119.99907 * 180.02562 * 15 14 12 33 33 H 1.08997 * 109.47291 * 5.74314 * 20 10 8 34 34 H 1.09002 * 109.47377 * 60.00128 * 21 20 10 35 35 H 1.09004 * 109.46903 * 179.97438 * 21 20 10 36 36 H 1.09004 * 109.47291 * 299.99631 * 21 20 10 37 37 H 1.08998 * 109.46917 * 60.00136 * 22 20 10 38 38 H 1.09004 * 109.47392 * 179.97438 * 22 20 10 39 39 H 1.08997 * 109.47135 * 300.00189 * 22 20 10 40 40 H 1.07995 * 125.79270 * 180.26094 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2216 -0.0005 5 6 3.5286 1.2785 -0.0006 6 6 4.2688 2.4247 0.0042 7 6 5.6277 2.0388 -0.0015 8 6 6.7940 2.9401 -0.0015 9 8 6.6383 4.1362 0.1530 10 7 8.0332 2.4384 -0.1725 11 6 8.2130 1.0143 -0.4652 12 6 8.3201 0.2455 0.8265 13 1 8.2599 0.7657 1.7710 14 6 8.4951 -1.1219 0.8025 15 7 8.5679 -1.7554 -0.3478 16 14 8.6286 -2.0747 2.4036 17 1 8.5160 -1.1362 3.5490 18 1 7.5349 -3.0767 2.4760 19 1 9.9402 -2.7688 2.4587 20 6 9.2004 3.3173 -0.0655 21 6 10.1799 2.7419 0.9593 22 6 9.8890 3.4188 -1.4281 23 6 5.6576 0.6567 -0.0012 24 7 4.3933 0.2053 -0.0006 25 1 4.1301 -0.7283 -0.0006 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.8882 3.4353 0.0087 30 1 9.1240 0.8752 -1.0474 31 1 7.3583 0.6498 -1.0352 32 1 8.6906 -2.7175 -0.3647 33 1 8.8805 4.3089 0.2546 34 1 10.5000 1.7503 0.6391 35 1 11.0486 3.3956 1.0385 36 1 9.6894 2.6696 1.9300 37 1 9.1912 3.8287 -2.1582 38 1 10.7572 4.0731 -1.3487 39 1 10.2089 2.4272 -1.7482 40 1 6.5470 0.0441 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000550353967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:06 Heat of formation + Delta-G solvation = -81.215254 kcal Electronic energy + Delta-G solvation = -24221.418403 eV Core-core repulsion = 20616.170201 eV Total energy + Delta-G solvation = -3605.248202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.66380 -41.14645 -40.21187 -37.56548 -37.40963 -35.14431 -33.38092 -32.06141 -30.79900 -29.32363 -28.41375 -27.90901 -25.05589 -24.71044 -23.83710 -21.64606 -21.12424 -20.45656 -19.15121 -18.50134 -18.26237 -17.72306 -17.50947 -16.75079 -16.36947 -16.17691 -15.90515 -15.13905 -14.95959 -14.78136 -14.59686 -14.33880 -14.26167 -14.12632 -13.75871 -13.69374 -13.18846 -13.09582 -12.93501 -12.75002 -12.70152 -12.28841 -12.17216 -11.98268 -11.88183 -11.76336 -11.56418 -11.44554 -10.83985 -10.56976 -10.19027 -9.46091 -9.31438 -8.19213 -6.31407 0.14183 0.88950 1.42268 1.50827 1.53454 1.58727 1.89627 2.09258 2.37056 2.52575 2.63463 3.09238 3.79051 3.89847 4.10600 4.26171 4.29860 4.32678 4.34832 4.42221 4.49916 4.63979 4.73236 4.76807 4.88440 4.96745 5.05388 5.06283 5.13667 5.15939 5.25328 5.42710 5.49237 5.57110 5.67227 5.73594 5.99647 6.06141 6.40955 6.59598 6.63156 6.88444 7.33325 7.48986 8.83231 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.005710 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.006168 B = 4902.106220 C = 6527.445038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.547 3.453 4 O -0.529 6.529 5 C -0.072 4.072 6 C -0.049 4.049 7 C -0.267 4.267 8 C 0.581 3.419 9 O -0.606 6.606 10 N -0.590 5.590 11 C 0.230 3.770 12 C -0.532 4.532 13 H 0.056 0.944 14 C 0.037 3.963 15 N -0.905 5.905 16 Si 0.940 3.060 17 H -0.277 1.277 18 H -0.274 1.274 19 H -0.282 1.282 20 C 0.128 3.872 21 C -0.141 4.141 22 C -0.149 4.149 23 C 0.104 3.896 24 N -0.508 5.508 25 H 0.439 0.561 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.137 0.863 29 H 0.149 0.851 30 H 0.032 0.968 31 H 0.044 0.956 32 H 0.272 0.728 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 -1.606 -0.666 6.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.394 3.606 4 O -0.419 6.419 5 C -0.180 4.180 6 C -0.076 4.076 7 C -0.275 4.275 8 C 0.372 3.628 9 O -0.492 6.492 10 N -0.319 5.319 11 C 0.109 3.891 12 C -0.570 4.570 13 H 0.074 0.926 14 C -0.165 4.165 15 N -0.544 5.544 16 Si 0.767 3.233 17 H -0.202 1.202 18 H -0.199 1.199 19 H -0.208 1.208 20 C 0.025 3.975 21 C -0.199 4.199 22 C -0.207 4.207 23 C -0.040 4.040 24 N -0.103 5.103 25 H 0.280 0.720 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.167 0.833 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -7.039 -1.059 -0.685 7.151 hybrid contribution -0.129 -0.857 0.807 1.184 sum -7.168 -1.915 0.122 7.421 Atomic orbital electron populations 1.23638 0.73621 1.06084 1.02920 1.86557 1.25906 1.31140 1.84246 1.19684 0.86573 0.82010 0.72339 1.90864 1.65895 1.36786 1.48373 1.18861 0.87175 0.88246 1.23682 1.21049 0.91003 0.97564 0.97945 1.19637 0.93402 0.93363 1.21108 1.17636 0.83237 0.86418 0.75463 1.90617 1.86554 1.16932 1.55047 1.48108 1.04690 1.11166 1.67905 1.19704 0.98125 0.75311 0.95925 1.21589 1.50104 0.92125 0.93229 0.92597 1.25433 0.94483 0.98088 0.98537 1.69994 1.48748 1.10096 1.25526 0.85765 0.78009 0.78803 0.80772 1.20183 1.19936 1.20825 1.21079 0.85621 0.93823 0.96940 1.21979 0.98397 1.01796 0.97731 1.22051 1.00671 1.02432 0.95546 1.25491 0.88765 0.96072 0.93659 1.41943 1.05223 1.09383 1.53734 0.72025 0.91653 0.91549 0.84496 0.83340 0.94974 0.93823 0.91852 0.90466 0.92140 0.90060 0.94215 0.93528 0.89372 0.92512 0.74309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.36 -8.98 10.58 -57.93 -0.61 -9.59 16 3 C 0.55 17.17 7.93 70.01 0.56 17.73 16 4 O -0.53 -18.82 16.65 19.52 0.33 -18.50 16 5 C -0.07 -2.44 7.02 39.98 0.28 -2.15 16 6 C -0.05 -1.91 10.38 22.59 0.23 -1.68 16 7 C -0.27 -11.11 5.95 -20.12 -0.12 -11.23 16 8 C 0.58 26.30 7.65 86.65 0.66 26.96 16 9 O -0.61 -29.97 16.28 -4.05 -0.07 -30.04 16 10 N -0.59 -24.74 2.38 -806.04 -1.92 -26.66 16 11 C 0.23 9.94 3.90 85.63 0.33 10.27 16 12 C -0.53 -24.00 5.72 25.60 0.15 -23.85 16 13 H 0.06 2.68 7.73 -2.91 -0.02 2.66 16 14 C 0.04 1.66 4.90 84.66 0.41 2.08 16 15 N -0.91 -42.41 13.29 21.45 0.28 -42.13 16 16 Si 0.94 37.12 29.54 68.60 2.03 39.15 16 17 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 18 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 20 C 0.13 4.70 3.22 44.99 0.14 4.84 16 21 C -0.14 -4.78 8.43 71.98 0.61 -4.17 16 22 C -0.15 -4.60 9.27 71.98 0.67 -3.93 16 23 C 0.10 3.94 9.32 84.33 0.79 4.73 16 24 N -0.51 -16.03 6.01 -183.40 -1.10 -17.14 16 25 H 0.44 10.96 8.96 -92.71 -0.83 10.13 16 26 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.15 5.76 8.06 -2.91 -0.02 5.74 16 30 H 0.03 1.46 6.67 -2.39 -0.02 1.44 16 31 H 0.04 1.95 4.86 -2.39 -0.01 1.94 16 32 H 0.27 12.15 8.31 -92.71 -0.77 11.38 16 33 H 0.08 2.98 6.95 -2.39 -0.02 2.96 16 34 H 0.06 2.22 6.97 -2.39 -0.02 2.21 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.04 1.44 8.09 -2.38 -0.02 1.42 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 1.81 6.91 -2.39 -0.02 1.79 16 40 H 0.24 9.89 2.77 -2.91 -0.01 9.88 16 Total: -1.00 -58.76 335.44 5.10 -53.66 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.25 Total: 29.95 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 5.91 Total: 21.29 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -2.74 Total: -85.93 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.35 Total: -58.12 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -58.76 5.10 -53.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550353967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.555 kcal (2) G-P(sol) polarization free energy of solvation -58.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds