Wall clock time and date at job start Tue Mar 31 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46844 * 2 1 4 4 H 1.08997 * 109.46740 * 179.90369 * 3 2 1 5 5 C 1.50703 * 109.47177 * 299.90474 * 3 2 1 6 6 H 1.07999 * 120.00012 * 119.99829 * 5 3 2 7 7 C 1.37871 * 119.99940 * 299.99884 * 5 3 2 8 8 N 1.31516 * 120.00066 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00055 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46800 * 60.00191 * 9 7 5 11 11 H 1.48494 * 109.47365 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47316 * 300.00261 * 9 7 5 13 13 N 1.46894 * 109.46966 * 59.90540 * 3 2 1 14 14 C 1.46901 * 111.00476 * 85.97051 * 13 3 2 15 15 C 1.50695 * 109.47564 * 175.52708 * 14 13 3 16 16 C 1.38166 * 120.03145 * 259.72551 * 15 14 13 17 17 C 1.38240 * 120.05777 * 179.79342 * 16 15 14 18 18 N 1.48000 * 119.94396 * 180.21322 * 17 16 15 19 19 O 1.21801 * 120.00132 * 180.25028 * 18 17 16 20 20 O 1.21794 * 120.00291 * 0.24866 * 18 17 16 21 21 C 1.38292 * 120.11172 * 0.45853 * 17 16 15 22 22 C 1.38121 * 120.05028 * 359.79708 * 21 17 16 23 23 C 1.38711 * 120.02844 * 80.00353 * 15 14 13 24 24 O 1.35902 * 120.05565 * 359.97438 * 23 15 14 25 25 C 1.42897 * 117.00462 * 180.02562 * 24 23 15 26 26 H 1.08996 * 109.47769 * 295.59413 * 1 2 3 27 27 H 1.09004 * 109.46832 * 175.59086 * 1 2 3 28 28 H 1.08998 * 109.47523 * 55.59877 * 1 2 3 29 29 H 1.08996 * 109.47243 * 119.99771 * 2 1 3 30 30 H 1.09005 * 109.46873 * 240.00383 * 2 1 3 31 31 H 0.97002 * 119.99894 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00401 * 209.93075 * 13 3 2 33 33 H 1.08998 * 109.46976 * 295.53461 * 14 13 3 34 34 H 1.09004 * 109.46501 * 55.52831 * 14 13 3 35 35 H 1.08003 * 119.96691 * 0.02562 * 16 15 14 36 36 H 1.07995 * 119.97070 * 179.76846 * 21 17 16 37 37 H 1.08004 * 120.02496 * 179.97438 * 22 21 17 38 38 H 1.09000 * 109.47159 * 59.99723 * 25 24 23 39 39 H 1.09000 * 109.47402 * 180.02562 * 25 24 23 40 40 H 1.09000 * 109.46509 * 300.00331 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0017 5 6 1.5395 2.1523 -1.2317 6 1 0.9184 3.0304 -1.1340 7 6 1.8746 1.6806 -2.4831 8 7 2.6305 0.6110 -2.6020 9 14 1.2537 2.5599 -4.0098 10 1 1.7481 3.9602 -4.0099 11 1 1.7502 1.8590 -5.2211 12 1 -0.2313 2.5593 -4.0119 13 7 1.5483 2.1357 1.1983 14 6 2.4426 1.9093 2.3415 15 6 1.9682 2.7214 3.5190 16 6 2.5858 3.9182 3.8274 17 6 2.1483 4.6657 4.9049 18 7 2.8087 5.9496 5.2302 19 8 2.4270 6.6068 6.1820 20 8 3.7339 6.3490 4.5462 21 6 1.0978 4.2133 5.6823 22 6 0.4805 3.0150 5.3812 23 6 0.9147 2.2652 4.2975 24 8 0.3088 1.0859 3.9993 25 6 -0.7696 0.6786 4.8438 26 1 -0.3634 0.4439 0.9268 27 1 -0.3633 -1.0247 -0.0790 28 1 -0.3634 0.5806 -0.8479 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 2.8665 0.2794 -3.4825 32 1 1.4291 3.1220 1.0222 33 1 2.4365 0.8513 2.6036 34 1 3.4555 2.2120 2.0759 35 1 3.4088 4.2718 3.2240 36 1 0.7603 4.7973 6.5257 37 1 -0.3396 2.6619 5.9889 38 1 -1.5590 1.4296 4.8127 39 1 -1.1626 -0.2768 4.4963 40 1 -0.4094 0.5724 5.8671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567121678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:42 Heat of formation + Delta-G solvation = -18.614366 kcal Electronic energy + Delta-G solvation = -23753.257429 eV Core-core repulsion = 20150.723805 eV Total energy + Delta-G solvation = -3602.533624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.11910 -40.57567 -37.85794 -36.52000 -36.34597 -33.51941 -31.58161 -31.26198 -30.09239 -27.96039 -26.75912 -25.88427 -24.58200 -23.13777 -22.42197 -21.60358 -19.15141 -18.80193 -18.63394 -18.35835 -17.46245 -16.66613 -16.34622 -16.02401 -15.06366 -14.87970 -14.50671 -13.96478 -13.82639 -13.62370 -13.62179 -12.93776 -12.85340 -12.33061 -12.14181 -11.89710 -11.61065 -11.55188 -11.48030 -11.20764 -11.10799 -11.09528 -10.92104 -10.76932 -10.43236 -10.13034 -9.78634 -9.50476 -9.38312 -8.87021 -8.69908 -8.49630 -7.33323 -6.05447 -4.11337 -0.08661 0.78750 1.39245 1.47614 2.93107 3.16106 3.28890 3.33818 3.36474 4.18096 4.28036 4.37702 4.52403 4.69132 4.85387 4.90952 5.04782 5.23243 5.25789 5.30099 5.42417 5.49356 5.63073 5.68087 5.90164 6.19308 6.23516 6.43238 6.51548 6.66172 6.82729 6.98550 7.21231 7.24408 7.44571 7.70639 7.70833 7.74184 7.79662 8.20098 8.31247 8.57853 8.96343 9.53655 11.00251 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.004337 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.340595 B = 6454.957830 C = 7746.502883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.675 5.675 14 C 0.105 3.895 15 C -0.102 4.102 16 C -0.014 4.014 17 C -0.089 4.089 18 N 0.039 4.961 19 O -0.177 6.177 20 O -0.167 6.167 21 C -0.018 4.018 22 C -0.217 4.217 23 C 0.206 3.794 24 O -0.277 6.277 25 C 0.020 3.980 26 H 0.043 0.957 27 H 0.011 0.989 28 H 0.054 0.946 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 0.853 16.627 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.110 3.890 4 H 0.020 0.980 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.306 5.306 14 C -0.024 4.024 15 C -0.104 4.104 16 C -0.034 4.034 17 C -0.173 4.173 18 N 0.555 4.445 19 O -0.390 6.390 20 O -0.382 6.382 21 C -0.037 4.037 22 C -0.237 4.237 23 C 0.157 3.843 24 O -0.187 6.187 25 C -0.075 4.075 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.175 0.825 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.489 -0.559 16.331 17.237 hybrid contribution 0.388 1.384 -0.770 1.631 sum -5.101 0.825 15.561 16.396 Atomic orbital electron populations 1.21433 0.97529 0.97271 1.01327 1.21410 0.95044 0.98081 0.99389 1.19167 0.93030 0.91544 0.85261 0.98043 1.21116 1.31858 1.12026 0.90292 0.92406 1.24863 0.94978 0.94964 0.98882 1.69869 1.36518 1.22635 1.23629 0.86636 0.79230 0.79700 0.82301 1.20342 1.21312 1.20251 1.60810 1.48127 1.15869 1.05791 1.20796 0.94473 0.98616 0.88503 1.19465 0.96109 0.95625 0.99236 1.20822 0.98188 0.91423 0.92979 1.20876 1.03140 0.88863 1.04389 1.43527 0.99632 1.02055 0.99250 1.94496 1.68166 1.56016 1.20327 1.94546 1.20427 1.74008 1.49260 1.20697 0.91009 0.94732 0.97300 1.21216 1.04987 0.96728 1.00726 1.19209 0.89758 0.84883 0.90466 1.86360 1.46259 1.33400 1.52678 1.23240 0.88192 1.01787 0.94286 0.93809 0.96951 0.92656 0.97160 0.89582 0.92856 0.85314 0.89940 0.94657 0.82506 0.83103 0.83345 0.92125 0.87459 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.52 37.16 0.35 -2.21 16 2 C -0.10 -2.35 5.59 -26.73 -0.15 -2.50 16 3 C 0.22 5.15 2.30 -68.86 -0.16 4.99 16 4 H 0.00 0.05 7.71 -51.93 -0.40 -0.35 16 5 C -0.51 -13.37 7.26 -34.44 -0.25 -13.62 16 6 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 7 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.53 11.32 55.43 0.63 -23.90 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.67 -13.28 5.64 -109.22 -0.62 -13.90 16 14 C 0.11 1.75 5.33 -4.98 -0.03 1.72 16 15 C -0.10 -1.43 5.36 -104.48 -0.56 -1.99 16 16 C -0.01 -0.19 9.17 -39.61 -0.36 -0.56 16 17 C -0.09 -1.16 6.85 -79.94 -0.55 -1.71 16 18 N 0.04 0.59 4.45 33.97 0.15 0.74 16 19 O -0.18 -2.66 18.44 -29.46 -0.54 -3.20 16 20 O -0.17 -2.69 18.44 -29.46 -0.54 -3.23 16 21 C -0.02 -0.19 9.55 -39.60 -0.38 -0.57 16 22 C -0.22 -2.12 9.04 -39.44 -0.36 -2.48 16 23 C 0.21 2.55 6.66 -39.22 -0.26 2.28 16 24 O -0.28 -3.47 9.73 -19.43 -0.19 -3.66 16 25 C 0.02 0.15 9.81 101.05 0.99 1.14 16 26 H 0.04 0.90 7.74 -51.93 -0.40 0.50 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 1.30 7.07 -51.93 -0.37 0.94 16 29 H 0.01 0.21 7.61 -51.93 -0.39 -0.18 16 30 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.33 6.52 8.13 -39.29 -0.32 6.20 16 33 H 0.08 1.41 7.32 -51.93 -0.38 1.03 16 34 H 0.04 0.59 7.80 -51.93 -0.41 0.18 16 35 H 0.16 2.05 7.58 -52.48 -0.40 1.65 16 36 H 0.15 1.30 7.60 -52.49 -0.40 0.90 16 37 H 0.15 0.98 6.30 -52.48 -0.33 0.64 16 38 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -29.13 339.10 -8.11 -37.24 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.29 Total: 2.83 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.80 Total: -13.84 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.16 Total: -37.06 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.28 Total: -10.09 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.13 -8.11 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567121678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.628 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds