Wall clock time and date at job start Tue Mar 31 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46844 * 2 1 4 4 H 1.08997 * 109.46740 * 179.90369 * 3 2 1 5 5 C 1.50703 * 109.47177 * 299.90474 * 3 2 1 6 6 H 1.07999 * 120.00012 * 119.99829 * 5 3 2 7 7 C 1.37871 * 119.99940 * 299.99884 * 5 3 2 8 8 N 1.31516 * 120.00066 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00055 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46800 * 60.00191 * 9 7 5 11 11 H 1.48494 * 109.47365 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47316 * 300.00261 * 9 7 5 13 13 N 1.46894 * 109.46966 * 59.90540 * 3 2 1 14 14 C 1.46901 * 111.00476 * 85.97051 * 13 3 2 15 15 C 1.50695 * 109.47564 * 175.52708 * 14 13 3 16 16 C 1.38166 * 120.03145 * 259.72551 * 15 14 13 17 17 C 1.38240 * 120.05777 * 179.79342 * 16 15 14 18 18 N 1.48000 * 119.94396 * 180.21322 * 17 16 15 19 19 O 1.21801 * 120.00132 * 180.25028 * 18 17 16 20 20 O 1.21794 * 120.00291 * 0.24866 * 18 17 16 21 21 C 1.38292 * 120.11172 * 0.45853 * 17 16 15 22 22 C 1.38121 * 120.05028 * 359.79708 * 21 17 16 23 23 C 1.38711 * 120.02844 * 80.00353 * 15 14 13 24 24 O 1.35902 * 120.05565 * 359.97438 * 23 15 14 25 25 C 1.42897 * 117.00462 * 180.02562 * 24 23 15 26 26 H 1.08996 * 109.47769 * 295.59413 * 1 2 3 27 27 H 1.09004 * 109.46832 * 175.59086 * 1 2 3 28 28 H 1.08998 * 109.47523 * 55.59877 * 1 2 3 29 29 H 1.08996 * 109.47243 * 119.99771 * 2 1 3 30 30 H 1.09005 * 109.46873 * 240.00383 * 2 1 3 31 31 H 0.97002 * 119.99894 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00401 * 209.93075 * 13 3 2 33 33 H 1.08998 * 109.46976 * 295.53461 * 14 13 3 34 34 H 1.09004 * 109.46501 * 55.52831 * 14 13 3 35 35 H 1.08003 * 119.96691 * 0.02562 * 16 15 14 36 36 H 1.07995 * 119.97070 * 179.76846 * 21 17 16 37 37 H 1.08004 * 120.02496 * 179.97438 * 22 21 17 38 38 H 1.09000 * 109.47159 * 59.99723 * 25 24 23 39 39 H 1.09000 * 109.47402 * 180.02562 * 25 24 23 40 40 H 1.09000 * 109.46509 * 300.00331 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0017 5 6 1.5395 2.1523 -1.2317 6 1 0.9184 3.0304 -1.1340 7 6 1.8746 1.6806 -2.4831 8 7 2.6305 0.6110 -2.6020 9 14 1.2537 2.5599 -4.0098 10 1 1.7481 3.9602 -4.0099 11 1 1.7502 1.8590 -5.2211 12 1 -0.2313 2.5593 -4.0119 13 7 1.5483 2.1357 1.1983 14 6 2.4426 1.9093 2.3415 15 6 1.9682 2.7214 3.5190 16 6 2.5858 3.9182 3.8274 17 6 2.1483 4.6657 4.9049 18 7 2.8087 5.9496 5.2302 19 8 2.4270 6.6068 6.1820 20 8 3.7339 6.3490 4.5462 21 6 1.0978 4.2133 5.6823 22 6 0.4805 3.0150 5.3812 23 6 0.9147 2.2652 4.2975 24 8 0.3088 1.0859 3.9993 25 6 -0.7696 0.6786 4.8438 26 1 -0.3634 0.4439 0.9268 27 1 -0.3633 -1.0247 -0.0790 28 1 -0.3634 0.5806 -0.8479 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 2.8665 0.2794 -3.4825 32 1 1.4291 3.1220 1.0222 33 1 2.4365 0.8513 2.6036 34 1 3.4555 2.2120 2.0759 35 1 3.4088 4.2718 3.2240 36 1 0.7603 4.7973 6.5257 37 1 -0.3396 2.6619 5.9889 38 1 -1.5590 1.4296 4.8127 39 1 -1.1626 -0.2768 4.4963 40 1 -0.4094 0.5724 5.8671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567121678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:41 Heat of formation + Delta-G solvation = -35.564999 kcal Electronic energy + Delta-G solvation = -23753.992464 eV Core-core repulsion = 20150.723805 eV Total energy + Delta-G solvation = -3603.268659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.22289 -41.51676 -38.81564 -38.02630 -37.63761 -35.06750 -33.29664 -32.20389 -31.62290 -28.69279 -28.49899 -26.87706 -26.11968 -24.94736 -23.36097 -22.74128 -20.96734 -19.95307 -19.75818 -19.21225 -18.57941 -18.32869 -17.52192 -16.93713 -16.73800 -15.98863 -15.79331 -15.37961 -15.33009 -14.94080 -14.44901 -14.41315 -13.96416 -13.93354 -13.62292 -13.11574 -13.00251 -12.80040 -12.70577 -12.66171 -12.41113 -12.28410 -12.27958 -12.26039 -12.11300 -11.88147 -11.57790 -11.28450 -10.81533 -10.53076 -10.39785 -9.70266 -9.02018 -8.09379 -6.21403 -1.15878 -0.13580 0.34129 0.42837 1.42969 1.43409 1.50621 2.13101 2.21631 2.42956 3.19626 3.23768 3.41634 3.56908 3.76929 3.85513 4.08418 4.25770 4.35713 4.43960 4.50684 4.59264 4.64330 4.70572 4.76895 4.82558 4.87016 4.90975 4.98316 5.16125 5.33241 5.36776 5.42542 5.57427 5.72048 5.83984 5.91086 6.18444 6.29560 6.45750 6.53596 6.76186 7.00364 7.47216 8.95201 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.004337 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.340595 B = 6454.957830 C = 7746.502883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.095 4.095 3 C 0.223 3.777 4 H -0.034 1.034 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.667 5.667 14 C 0.112 3.888 15 C -0.121 4.121 16 C -0.016 4.016 17 C -0.104 4.104 18 N 0.041 4.959 19 O -0.163 6.163 20 O -0.215 6.215 21 C -0.004 4.004 22 C -0.198 4.198 23 C 0.209 3.791 24 O -0.303 6.303 25 C 0.007 3.993 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.261 0.739 32 H 0.328 0.672 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.148 0.852 36 H 0.179 0.821 37 H 0.191 0.809 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 0.855 18.650 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.134 4.134 3 C 0.115 3.885 4 H -0.017 1.017 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.297 5.297 14 C -0.017 4.017 15 C -0.123 4.123 16 C -0.036 4.036 17 C -0.188 4.188 18 N 0.553 4.447 19 O -0.382 6.382 20 O -0.419 6.419 21 C -0.023 4.023 22 C -0.217 4.217 23 C 0.159 3.841 24 O -0.214 6.214 25 C -0.086 4.086 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.165 0.835 36 H 0.197 0.803 37 H 0.208 0.792 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.837 -0.547 18.309 19.923 hybrid contribution 1.043 1.304 -1.256 2.089 sum -6.794 0.757 17.054 18.373 Atomic orbital electron populations 1.21270 0.95884 0.98147 1.00814 1.21271 0.96353 0.97402 0.98373 1.18946 0.90828 0.92296 0.86462 1.01660 1.21392 1.31508 1.11969 0.91368 0.92659 1.25567 0.95225 0.95607 1.01553 1.70004 1.37563 1.23827 1.24015 0.85717 0.78824 0.78627 0.79084 1.20035 1.21166 1.19689 1.60707 1.48578 1.15364 1.05047 1.20642 0.93604 0.98901 0.88524 1.19125 0.97991 0.95939 0.99268 1.20703 0.98094 0.91468 0.93313 1.20989 1.04314 0.88202 1.05281 1.43769 0.99430 1.02545 0.98939 1.94456 1.67525 1.56253 1.19929 1.94557 1.22011 1.75096 1.50279 1.21093 0.89305 0.94861 0.97012 1.21575 1.05103 0.95430 0.99605 1.19308 0.88961 0.85185 0.90613 1.86327 1.47489 1.33249 1.54319 1.23605 0.87393 1.02579 0.95057 0.92636 0.95061 0.94928 0.96105 0.92585 0.93019 0.85505 0.90500 0.95574 0.83459 0.80345 0.79159 0.90506 0.86739 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.41 9.52 71.98 0.69 -3.72 16 2 C -0.10 -4.50 5.59 30.60 0.17 -4.33 16 3 C 0.22 10.86 2.30 44.17 0.10 10.97 16 4 H -0.03 -1.88 7.71 -2.39 -0.02 -1.89 16 5 C -0.52 -27.71 7.26 25.60 0.19 -27.52 16 6 H 0.06 2.89 7.60 -2.91 -0.02 2.87 16 7 C 0.02 1.08 5.30 84.65 0.45 1.52 16 8 N -0.91 -51.72 11.32 21.45 0.24 -51.48 16 9 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 13 N -0.67 -26.58 5.64 -499.46 -2.82 -29.40 16 14 C 0.11 3.80 5.33 85.56 0.46 4.25 16 15 C -0.12 -3.30 5.36 -19.77 -0.11 -3.41 16 16 C -0.02 -0.42 9.17 22.25 0.20 -0.22 16 17 C -0.10 -2.57 6.85 36.39 0.25 -2.32 16 18 N 0.04 1.21 4.45 -46.44 -0.21 1.00 16 19 O -0.16 -4.59 18.44 18.88 0.35 -4.24 16 20 O -0.22 -7.12 18.44 18.89 0.35 -6.77 16 21 C 0.00 -0.06 9.55 22.25 0.21 0.15 16 22 C -0.20 -3.00 9.04 22.36 0.20 -2.80 16 23 C 0.21 4.63 6.66 22.50 0.15 4.78 16 24 O -0.30 -6.78 9.73 -92.45 -0.90 -7.68 16 25 C 0.01 0.08 9.81 113.37 1.11 1.19 16 26 H 0.05 2.20 7.74 -2.39 -0.02 2.18 16 27 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.03 1.51 7.07 -2.39 -0.02 1.49 16 29 H 0.02 0.90 7.61 -2.39 -0.02 0.88 16 30 H 0.06 3.00 6.07 -2.38 -0.01 2.99 16 31 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.33 13.20 8.13 -89.69 -0.73 12.47 16 33 H 0.08 2.66 7.32 -2.39 -0.02 2.65 16 34 H 0.03 0.92 7.80 -2.38 -0.02 0.90 16 35 H 0.15 4.10 7.58 -2.91 -0.02 4.08 16 36 H 0.18 2.19 7.60 -2.91 -0.02 2.17 16 37 H 0.19 1.29 6.30 -2.91 -0.02 1.27 16 38 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 39 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 40 H 0.08 0.52 7.66 -2.39 -0.02 0.50 16 Total: -1.00 -64.48 339.10 3.45 -61.03 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.34 Total: 13.95 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 4.07 Total: -21.45 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.78 Total: -79.88 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.20 Total: -18.69 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -64.48 3.45 -61.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567121678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.462 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds