Wall clock time and date at job start Tue Mar 31 2020 07:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00094 * 2 1 4 4 C 1.38759 * 120.05410 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.94288 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05237 * 0.02562 * 5 4 3 7 7 C 1.38237 * 120.11848 * 359.97438 * 6 5 4 8 8 C 1.38172 * 120.05317 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.02771 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47164 * 215.02189 * 9 8 7 11 11 C 1.52999 * 109.46793 * 95.02249 * 9 8 7 12 12 S 1.81399 * 109.47165 * 335.02804 * 9 8 7 13 13 C 1.81406 * 102.99924 * 184.99642 * 12 9 8 14 14 C 1.52996 * 109.47077 * 179.97438 * 13 12 9 15 15 C 1.52998 * 109.47350 * 300.00112 * 14 13 12 16 16 C 1.52999 * 109.47194 * 60.00023 * 14 13 12 17 17 C 1.50696 * 109.47060 * 180.02562 * 14 13 12 18 18 H 1.07999 * 120.00274 * 1.32102 * 17 14 13 19 19 C 1.37878 * 120.00325 * 181.32571 * 17 14 13 20 20 N 1.31508 * 120.00272 * 194.00570 * 19 17 14 21 21 Si 1.86800 * 119.99873 * 14.00107 * 19 17 14 22 22 H 1.48509 * 109.46927 * 84.54458 * 21 19 17 23 23 H 1.48494 * 109.47440 * 204.54379 * 21 19 17 24 24 H 1.48501 * 109.47095 * 324.55085 * 21 19 17 25 25 H 1.08998 * 109.46896 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46548 * 299.99748 * 1 2 3 27 27 H 1.08993 * 109.47348 * 59.99865 * 1 2 3 28 28 H 1.07995 * 120.03080 * 0.02562 * 4 3 2 29 29 H 1.07991 * 119.97003 * 179.72475 * 5 4 3 30 30 H 1.08006 * 119.94242 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.97961 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47259 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.47695 * 299.99981 * 11 9 8 34 34 H 1.08999 * 109.47093 * 60.00145 * 11 9 8 35 35 H 1.08995 * 109.46866 * 300.00068 * 13 12 9 36 36 H 1.09004 * 109.46752 * 59.99910 * 13 12 9 37 37 H 1.08999 * 109.47078 * 69.40887 * 15 14 13 38 38 H 1.09001 * 109.47240 * 189.41307 * 15 14 13 39 39 H 1.09004 * 109.47273 * 309.41292 * 15 14 13 40 40 H 1.09006 * 109.46854 * 59.99964 * 16 14 13 41 41 H 1.08995 * 109.47207 * 179.97438 * 16 14 13 42 42 H 1.08996 * 109.47310 * 300.00232 * 16 14 13 43 43 H 0.97002 * 120.00363 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 4.0560 2.5171 -0.0011 8 6 3.4311 1.2848 0.0005 9 6 4.2538 0.0221 0.0005 10 1 3.7463 -0.7421 -0.5881 11 6 4.4279 -0.4730 1.4377 12 16 5.8820 0.3612 -0.7236 13 6 6.6544 -1.2793 -0.7774 14 6 8.0583 -1.1627 -1.3742 15 6 7.9642 -0.5965 -2.7924 16 6 8.9050 -0.2286 -0.5073 17 6 8.6997 -2.5256 -1.4195 18 1 8.1520 -3.3918 -1.0786 19 6 9.9857 -2.6669 -1.8961 20 7 10.4484 -3.8609 -2.1959 21 14 11.0707 -1.1624 -2.1163 22 1 11.7271 -0.8323 -0.8256 23 1 12.1077 -1.4455 -3.1408 24 1 10.2400 -0.0132 -2.5572 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2128 2.3204 -0.0005 29 1 1.3340 4.5113 -0.0060 30 1 3.7923 4.6380 -0.0024 31 1 5.1345 2.5752 -0.0019 32 1 5.0225 -1.3866 1.4377 33 1 4.9354 0.2912 2.0264 34 1 3.4496 -0.6768 1.8728 35 1 6.7210 -1.6828 0.2329 36 1 6.0513 -1.9446 -1.3954 37 1 7.6575 0.4484 -2.7469 38 1 8.9376 -0.6687 -3.2778 39 1 7.2306 -1.1660 -3.3631 40 1 8.9720 -0.6320 0.5031 41 1 9.9053 -0.1459 -0.9322 42 1 8.4410 0.7571 -0.4749 43 1 11.3531 -3.9603 -2.5315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571179012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:20 Heat of formation + Delta-G solvation = -8.679468 kcal Electronic energy + Delta-G solvation = -21542.699672 eV Core-core repulsion = 18486.890072 eV Total energy + Delta-G solvation = -3055.809600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37462 -37.57310 -36.31569 -34.22681 -31.80373 -30.31858 -29.63262 -27.48086 -26.72584 -26.18135 -24.85232 -24.00745 -22.27506 -21.21158 -19.19221 -18.10526 -16.55895 -16.17450 -16.05408 -15.89266 -15.40928 -15.03138 -14.56533 -14.26327 -13.76489 -13.74659 -13.31673 -13.14803 -12.96050 -12.79736 -12.43381 -12.26675 -12.05142 -11.88933 -11.83646 -11.57010 -11.31679 -11.16521 -11.10528 -10.72670 -10.61299 -10.03565 -10.00943 -9.90066 -9.45816 -8.93389 -8.80868 -8.60341 -8.38552 -8.24911 -7.08859 -6.10460 -4.07167 1.20957 1.33534 2.18438 3.11681 3.19652 3.31989 3.41395 3.44931 3.67405 4.42491 4.53126 4.70569 4.85327 4.90877 4.99300 5.13373 5.22192 5.24608 5.26735 5.32761 5.38610 5.66794 5.75087 5.84419 5.86811 5.94649 5.98479 6.18742 6.22766 6.30738 6.35184 6.48472 6.49278 6.60777 6.66960 6.69926 6.80742 6.86890 7.03207 7.24365 7.31135 7.53376 7.78459 8.49208 8.92510 9.54465 11.02563 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.003784 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.443678 B = 7398.761524 C = 7957.646411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.132 3.868 4 C -0.210 4.210 5 C -0.086 4.086 6 C -0.155 4.155 7 C -0.067 4.067 8 C -0.087 4.087 9 C -0.019 4.019 10 H 0.093 0.907 11 C -0.137 4.137 12 S -0.263 6.263 13 C -0.047 4.047 14 C 0.055 3.945 15 C -0.140 4.140 16 C -0.147 4.147 17 C -0.511 4.511 18 H 0.073 0.927 19 C 0.076 3.924 20 N -0.894 5.894 21 Si 0.883 3.117 22 H -0.286 1.286 23 H -0.306 1.306 24 H -0.246 1.246 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.142 0.858 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.038 0.962 42 H 0.043 0.957 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.196 12.864 5.679 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.086 3.914 4 C -0.229 4.229 5 C -0.104 4.104 6 C -0.173 4.173 7 C -0.086 4.086 8 C -0.088 4.088 9 C -0.147 4.147 10 H 0.111 0.889 11 C -0.196 4.196 12 S -0.033 6.033 13 C -0.195 4.195 14 C 0.052 3.948 15 C -0.198 4.198 16 C -0.204 4.204 17 C -0.550 4.550 18 H 0.091 0.909 19 C -0.126 4.126 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.213 1.213 23 H -0.235 1.235 24 H -0.172 1.172 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.557 13.503 5.277 23.548 hybrid contribution -0.105 -0.416 0.269 0.506 sum -18.661 13.087 5.546 23.458 Atomic orbital electron populations 1.23042 0.78645 1.03905 1.01151 1.86106 1.21080 1.26782 1.88592 1.18789 0.91433 0.84314 0.96885 1.21140 0.99729 0.92303 1.09740 1.20908 0.94717 0.96796 0.98028 1.21055 0.93777 0.98415 1.04041 1.21083 1.00910 0.90694 0.95876 1.18762 0.89788 0.94605 1.05691 1.21802 0.95852 0.97244 0.99798 0.88877 1.21996 1.01840 1.01704 0.94081 1.86595 1.14280 1.19824 1.82645 1.23657 1.00044 0.92146 1.03640 1.18288 0.88860 0.96021 0.91592 1.22279 1.01016 0.98062 0.98420 1.22364 0.99109 0.98623 1.00320 1.20783 0.99394 0.91339 1.43527 0.90893 1.24943 0.97980 0.95672 0.94013 1.69949 1.17252 1.22649 1.43252 0.87312 0.79608 0.84442 0.77061 1.21336 1.23471 1.17196 0.88273 0.92797 0.92740 0.85618 0.86007 0.85829 0.84080 0.91835 0.91674 0.92251 0.90872 0.90972 0.94738 0.92923 0.93686 0.93126 0.94353 0.93776 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.73 9.63 -19.41 -0.19 -3.91 16 3 C 0.13 1.66 6.66 -39.21 -0.26 1.40 16 4 C -0.21 -2.20 9.04 -39.43 -0.36 -2.56 16 5 C -0.09 -0.86 10.04 -39.60 -0.40 -1.26 16 6 C -0.15 -1.70 10.04 -39.56 -0.40 -2.10 16 7 C -0.07 -0.88 9.10 -39.61 -0.36 -1.24 16 8 C -0.09 -1.21 5.01 -104.47 -0.52 -1.73 16 9 C -0.02 -0.28 2.73 -27.88 -0.08 -0.35 16 10 H 0.09 1.46 7.69 -51.93 -0.40 1.06 16 11 C -0.14 -1.88 9.08 37.16 0.34 -1.54 16 12 S -0.26 -4.56 16.31 -107.50 -1.75 -6.31 16 13 C -0.05 -0.95 4.56 37.16 0.17 -0.78 16 14 C 0.05 1.26 0.52 -155.67 -0.08 1.18 16 15 C -0.14 -3.15 7.41 37.16 0.28 -2.87 16 16 C -0.15 -3.25 7.46 37.16 0.28 -2.97 16 17 C -0.51 -14.07 8.62 -34.44 -0.30 -14.37 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.08 2.18 5.32 -17.82 -0.09 2.09 16 20 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 21 Si 0.88 21.99 22.79 -169.99 -3.87 18.12 16 22 H -0.29 -7.06 7.10 56.52 0.40 -6.66 16 23 H -0.31 -7.72 7.11 56.52 0.40 -7.32 16 24 H -0.25 -5.74 4.65 56.52 0.26 -5.48 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 28 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.14 1.93 6.48 -52.49 -0.34 1.59 16 32 H 0.06 0.89 6.92 -51.93 -0.36 0.54 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.44 7.14 -51.93 -0.37 1.07 16 36 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 37 H 0.03 0.71 7.29 -51.93 -0.38 0.33 16 38 H 0.05 1.24 4.30 -51.93 -0.22 1.01 16 39 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.89 2.25 -51.93 -0.12 0.77 16 42 H 0.04 0.88 6.91 -51.93 -0.36 0.53 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -30.52 338.80 -7.48 -38.00 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.75 Total: 1.31 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -0.79 Total: -25.90 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.41 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.19 Total: -3.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -3.87 Total: 18.12 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -1.75 Total: -6.31 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.52 -7.48 -38.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571179012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.322 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds