Wall clock time and date at job start Tue Mar 31 2020 07:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00094 * 2 1 4 4 C 1.38759 * 120.05410 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.94288 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05237 * 0.02562 * 5 4 3 7 7 C 1.38237 * 120.11848 * 359.97438 * 6 5 4 8 8 C 1.38172 * 120.05317 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.02771 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47164 * 215.02189 * 9 8 7 11 11 C 1.52999 * 109.46793 * 95.02249 * 9 8 7 12 12 S 1.81399 * 109.47165 * 335.02804 * 9 8 7 13 13 C 1.81406 * 102.99924 * 184.99642 * 12 9 8 14 14 C 1.52996 * 109.47077 * 179.97438 * 13 12 9 15 15 C 1.52998 * 109.47350 * 300.00112 * 14 13 12 16 16 C 1.52999 * 109.47194 * 60.00023 * 14 13 12 17 17 C 1.50696 * 109.47060 * 180.02562 * 14 13 12 18 18 H 1.07999 * 120.00274 * 1.32102 * 17 14 13 19 19 C 1.37878 * 120.00325 * 181.32571 * 17 14 13 20 20 N 1.31508 * 120.00272 * 194.00570 * 19 17 14 21 21 Si 1.86800 * 119.99873 * 14.00107 * 19 17 14 22 22 H 1.48509 * 109.46927 * 84.54458 * 21 19 17 23 23 H 1.48494 * 109.47440 * 204.54379 * 21 19 17 24 24 H 1.48501 * 109.47095 * 324.55085 * 21 19 17 25 25 H 1.08998 * 109.46896 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46548 * 299.99748 * 1 2 3 27 27 H 1.08993 * 109.47348 * 59.99865 * 1 2 3 28 28 H 1.07995 * 120.03080 * 0.02562 * 4 3 2 29 29 H 1.07991 * 119.97003 * 179.72475 * 5 4 3 30 30 H 1.08006 * 119.94242 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.97961 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47259 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.47695 * 299.99981 * 11 9 8 34 34 H 1.08999 * 109.47093 * 60.00145 * 11 9 8 35 35 H 1.08995 * 109.46866 * 300.00068 * 13 12 9 36 36 H 1.09004 * 109.46752 * 59.99910 * 13 12 9 37 37 H 1.08999 * 109.47078 * 69.40887 * 15 14 13 38 38 H 1.09001 * 109.47240 * 189.41307 * 15 14 13 39 39 H 1.09004 * 109.47273 * 309.41292 * 15 14 13 40 40 H 1.09006 * 109.46854 * 59.99964 * 16 14 13 41 41 H 1.08995 * 109.47207 * 179.97438 * 16 14 13 42 42 H 1.08996 * 109.47310 * 300.00232 * 16 14 13 43 43 H 0.97002 * 120.00363 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 4.0560 2.5171 -0.0011 8 6 3.4311 1.2848 0.0005 9 6 4.2538 0.0221 0.0005 10 1 3.7463 -0.7421 -0.5881 11 6 4.4279 -0.4730 1.4377 12 16 5.8820 0.3612 -0.7236 13 6 6.6544 -1.2793 -0.7774 14 6 8.0583 -1.1627 -1.3742 15 6 7.9642 -0.5965 -2.7924 16 6 8.9050 -0.2286 -0.5073 17 6 8.6997 -2.5256 -1.4195 18 1 8.1520 -3.3918 -1.0786 19 6 9.9857 -2.6669 -1.8961 20 7 10.4484 -3.8609 -2.1959 21 14 11.0707 -1.1624 -2.1163 22 1 11.7271 -0.8323 -0.8256 23 1 12.1077 -1.4455 -3.1408 24 1 10.2400 -0.0132 -2.5572 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2128 2.3204 -0.0005 29 1 1.3340 4.5113 -0.0060 30 1 3.7923 4.6380 -0.0024 31 1 5.1345 2.5752 -0.0019 32 1 5.0225 -1.3866 1.4377 33 1 4.9354 0.2912 2.0264 34 1 3.4496 -0.6768 1.8728 35 1 6.7210 -1.6828 0.2329 36 1 6.0513 -1.9446 -1.3954 37 1 7.6575 0.4484 -2.7469 38 1 8.9376 -0.6687 -3.2778 39 1 7.2306 -1.1660 -3.3631 40 1 8.9720 -0.6320 0.5031 41 1 9.9053 -0.1459 -0.9322 42 1 8.4410 0.7571 -0.4749 43 1 11.3531 -3.9603 -2.5315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571179012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:20 Heat of formation + Delta-G solvation = -25.486745 kcal Electronic energy + Delta-G solvation = -21543.428490 eV Core-core repulsion = 18486.890072 eV Total energy + Delta-G solvation = -3056.538418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.20698 -38.41026 -38.17167 -35.24458 -33.96992 -31.18028 -30.55251 -28.47432 -28.07223 -27.95707 -26.99930 -25.02974 -23.10135 -22.21646 -21.03890 -18.94583 -18.14789 -17.53863 -17.37195 -17.08491 -16.64613 -16.11846 -15.46575 -15.41358 -15.22012 -14.97279 -14.83056 -14.71362 -14.38651 -14.28178 -13.80422 -13.75537 -13.24256 -13.15611 -12.83248 -12.70414 -12.66090 -12.47012 -12.34167 -12.03669 -11.95948 -11.89894 -11.72492 -11.59192 -11.18000 -10.68437 -10.44212 -10.38348 -9.80499 -9.10416 -8.48979 -8.31883 -6.31972 0.32101 0.47264 0.85262 1.34581 1.37831 1.48272 1.74897 2.33556 2.39588 2.81089 3.04650 3.58597 3.95642 4.06732 4.12187 4.12703 4.17586 4.19711 4.34152 4.41210 4.46578 4.48433 4.54058 4.69041 4.73248 4.75706 4.77763 4.82319 4.87769 4.89723 4.97377 5.05042 5.10818 5.17049 5.24385 5.35915 5.47507 5.49508 5.62300 5.68995 5.76360 5.87679 6.29982 6.46428 6.70978 7.32870 8.84910 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.003784 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.443678 B = 7398.761524 C = 7957.646411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.121 3.879 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.158 4.158 7 C -0.083 4.083 8 C -0.113 4.113 9 C -0.008 4.008 10 H 0.080 0.920 11 C -0.131 4.131 12 S -0.250 6.250 13 C -0.048 4.048 14 C 0.050 3.950 15 C -0.136 4.136 16 C -0.144 4.144 17 C -0.512 4.512 18 H 0.033 0.967 19 C 0.022 3.978 20 N -0.944 5.944 21 Si 0.938 3.062 22 H -0.280 1.280 23 H -0.312 1.312 24 H -0.217 1.217 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.067 0.933 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.228 16.246 6.106 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.075 3.925 4 C -0.227 4.227 5 C -0.098 4.098 6 C -0.176 4.176 7 C -0.102 4.102 8 C -0.115 4.115 9 C -0.137 4.137 10 H 0.099 0.901 11 C -0.190 4.190 12 S -0.020 6.020 13 C -0.196 4.196 14 C 0.048 3.952 15 C -0.193 4.193 16 C -0.201 4.201 17 C -0.551 4.551 18 H 0.052 0.948 19 C -0.175 4.175 20 N -0.583 5.583 21 Si 0.768 3.232 22 H -0.207 1.207 23 H -0.241 1.241 24 H -0.141 1.141 25 H 0.130 0.870 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.171 0.829 29 H 0.173 0.827 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.611 16.897 5.712 27.257 hybrid contribution 0.298 -1.498 0.181 1.538 sum -20.313 15.399 5.892 26.162 Atomic orbital electron populations 1.23329 0.76500 1.05335 1.02382 1.86074 1.23397 1.26912 1.88586 1.18932 0.91185 0.85332 0.97070 1.21491 1.01086 0.91687 1.08444 1.21328 0.94530 0.97897 0.96070 1.21332 0.94468 0.98492 1.03326 1.21077 1.00591 0.91378 0.97146 1.18748 0.90565 0.94020 1.08134 1.21772 0.94034 0.98064 0.99816 0.90116 1.21937 1.02304 1.01199 0.93589 1.86385 1.15902 1.16548 1.83208 1.23374 0.98841 0.94511 1.02912 1.18252 0.90400 0.93768 0.92799 1.22198 1.00362 0.99291 0.97495 1.22293 0.98449 0.99473 0.99851 1.21080 0.99273 0.92601 1.42188 0.94842 1.25738 0.99429 0.98388 0.93985 1.70086 1.17774 1.25124 1.45316 0.86410 0.77796 0.81943 0.77087 1.20704 1.24091 1.14102 0.86955 0.91281 0.91645 0.82943 0.82735 0.83789 0.85198 0.92844 0.91376 0.91114 0.91226 0.92183 0.92544 0.93966 0.94037 0.93157 0.95050 0.91382 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.51 9.63 -92.37 -0.89 -8.40 16 3 C 0.12 2.82 6.66 22.51 0.15 2.97 16 4 C -0.21 -3.66 9.04 22.37 0.20 -3.46 16 5 C -0.08 -1.29 10.04 22.26 0.22 -1.06 16 6 C -0.16 -3.02 10.04 22.28 0.22 -2.79 16 7 C -0.08 -2.04 9.10 22.25 0.20 -1.84 16 8 C -0.11 -3.00 5.01 -19.77 -0.10 -3.09 16 9 C -0.01 -0.25 2.73 29.85 0.08 -0.17 16 10 H 0.08 2.55 7.69 -2.39 -0.02 2.53 16 11 C -0.13 -3.54 9.08 71.98 0.65 -2.89 16 12 S -0.25 -8.45 16.31 -56.49 -0.92 -9.37 16 13 C -0.05 -1.96 4.56 71.98 0.33 -1.63 16 14 C 0.05 2.28 0.52 -52.93 -0.03 2.25 16 15 C -0.14 -5.95 7.41 71.98 0.53 -5.41 16 16 C -0.14 -6.11 7.46 71.98 0.54 -5.57 16 17 C -0.51 -29.02 8.62 25.60 0.22 -28.80 16 18 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 19 C 0.02 1.31 5.32 84.66 0.45 1.76 16 20 N -0.94 -59.38 13.96 21.45 0.30 -59.08 16 21 Si 0.94 45.25 22.79 68.60 1.56 46.81 16 22 H -0.28 -13.16 7.10 99.48 0.71 -12.45 16 23 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 24 H -0.22 -9.41 4.65 99.48 0.46 -8.95 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 27 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 28 H 0.15 1.77 6.30 -2.91 -0.02 1.75 16 29 H 0.16 1.45 8.06 -2.92 -0.02 1.42 16 30 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.13 3.39 6.48 -2.91 -0.02 3.37 16 32 H 0.05 1.52 6.92 -2.39 -0.02 1.50 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 2.81 7.14 -2.39 -0.02 2.79 16 36 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.06 2.21 7.29 -2.39 -0.02 2.19 16 38 H 0.04 1.91 4.30 -2.39 -0.01 1.90 16 39 H 0.04 1.80 8.12 -2.38 -0.02 1.78 16 40 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.03 1.37 2.25 -2.39 -0.01 1.37 16 42 H 0.07 2.56 6.91 -2.39 -0.02 2.54 16 43 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -67.36 338.80 5.59 -61.77 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.74 Total: 16.65 kcal Atomic # 6 Polarization: -53.18 SS G_CDS: 4.79 Total: -48.39 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.30 Total: -59.08 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.89 Total: -8.40 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.56 Total: 46.81 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -0.92 Total: -9.37 kcal Total: -67.36 5.59 -61.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571179012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.282 kcal (2) G-P(sol) polarization free energy of solvation -67.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds