Wall clock time and date at job start Tue Mar 31 2020 06:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46787 * 2 1 4 4 H 1.09007 * 109.47124 * 181.79172 * 3 2 1 5 5 C 1.50700 * 109.47259 * 61.79613 * 3 2 1 6 6 H 1.08005 * 119.99898 * 244.97654 * 5 3 2 7 7 C 1.37875 * 120.00281 * 64.97621 * 5 3 2 8 8 N 1.31517 * 119.99637 * 9.72965 * 7 5 3 9 9 Si 1.86794 * 120.00226 * 189.72732 * 7 5 3 10 10 H 1.48508 * 109.47345 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47441 * 300.00139 * 9 7 5 12 12 H 1.48502 * 109.47266 * 60.00168 * 9 7 5 13 13 N 1.46899 * 109.47328 * 301.79365 * 3 2 1 14 14 C 1.46907 * 110.99887 * 274.11680 * 13 3 2 15 15 C 1.53003 * 109.46673 * 184.12694 * 14 13 3 16 16 O 1.42901 * 109.47136 * 65.00388 * 15 14 13 17 17 C 1.35895 * 116.99787 * 180.02562 * 16 15 14 18 18 C 1.38760 * 120.05886 * 359.71657 * 17 16 15 19 19 C 1.38120 * 119.94453 * 179.79571 * 18 17 16 20 20 C 1.38281 * 120.05809 * 0.48543 * 19 18 17 21 21 C 1.38244 * 120.11233 * 359.74315 * 20 19 18 22 22 N 1.48000 * 119.97554 * 179.97438 * 21 20 19 23 23 O 1.21803 * 120.00538 * 180.02562 * 22 21 20 24 24 O 1.21798 * 119.99928 * 0.03411 * 22 21 20 25 25 C 1.38173 * 120.05328 * 0.02958 * 21 20 19 26 26 H 1.09002 * 109.46917 * 184.51093 * 1 2 3 27 27 H 1.08995 * 109.47109 * 304.50835 * 1 2 3 28 28 H 1.08997 * 109.47093 * 64.51508 * 1 2 3 29 29 H 1.09004 * 109.46947 * 240.00292 * 2 1 3 30 30 H 1.08999 * 109.47310 * 119.99928 * 2 1 3 31 31 H 0.96997 * 120.00092 * 357.03712 * 8 7 5 32 32 H 1.00899 * 111.00242 * 150.16658 * 13 3 2 33 33 H 1.09001 * 109.47135 * 304.12579 * 14 13 3 34 34 H 1.08996 * 109.47226 * 64.12911 * 14 13 3 35 35 H 1.09004 * 109.46722 * 185.00000 * 15 14 13 36 36 H 1.08997 * 109.47445 * 304.99519 * 15 14 13 37 37 H 1.08003 * 120.02641 * 0.02562 * 18 17 16 38 38 H 1.08005 * 119.97065 * 180.22958 * 19 18 17 39 39 H 1.07996 * 119.94675 * 179.76732 * 20 19 18 40 40 H 1.07997 * 120.02597 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1295 1.4427 -0.0321 5 6 1.5743 2.1399 1.2521 6 1 0.8863 2.9697 1.1840 7 6 2.0265 1.7188 2.4846 8 7 3.0037 0.8420 2.5620 9 14 1.2513 2.3936 4.0444 10 1 1.9112 1.7861 5.2281 11 1 1.4222 3.8681 4.0843 12 1 -0.1962 2.0624 4.0612 13 7 1.5152 2.1474 -1.1771 14 6 2.3761 1.9308 -2.3476 15 6 1.8564 2.7604 -3.5234 16 8 1.9787 4.1507 -3.2164 17 6 1.5581 5.0308 -4.1626 18 6 1.0437 4.5659 -5.3645 19 6 0.6130 5.4624 -6.3229 20 6 0.7034 6.8224 -6.0894 21 6 1.2198 7.2882 -4.8947 22 7 1.3157 8.7444 -4.6482 23 8 1.7711 9.1555 -3.5960 24 8 0.9390 9.5319 -5.4976 25 6 1.6477 6.3954 -3.9308 26 1 -0.3633 -1.0245 0.0808 27 1 -0.3633 0.5822 0.8468 28 1 -0.3633 0.4422 -0.9276 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 3.3772 0.4594 1.7528 32 1 1.4026 3.1322 -0.9885 33 1 3.3954 2.2355 -2.1103 34 1 2.3658 0.8743 -2.6157 35 1 2.4405 2.5325 -4.4151 36 1 0.8090 2.5188 -3.7038 37 1 0.9767 3.5039 -5.5490 38 1 0.2091 5.1010 -7.2571 39 1 0.3695 7.5219 -6.8415 40 1 2.0515 6.7598 -2.9978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571892281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:18 Heat of formation + Delta-G solvation = -22.988328 kcal Electronic energy + Delta-G solvation = -22970.184478 eV Core-core repulsion = 19367.461185 eV Total energy + Delta-G solvation = -3602.723293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.36686 -40.59175 -38.13831 -36.74007 -36.52269 -33.28951 -32.27247 -31.28252 -30.54734 -28.58653 -26.86259 -25.31356 -23.52298 -23.31776 -23.01303 -21.51950 -19.80185 -19.38875 -18.84556 -17.71204 -17.50819 -17.06629 -16.72743 -16.21990 -16.17180 -14.67626 -14.48388 -14.30741 -14.05325 -13.72502 -13.48371 -13.15223 -12.80481 -12.61733 -12.26294 -11.96561 -11.86069 -11.71209 -11.36966 -11.30435 -11.30160 -11.19130 -11.03562 -10.81410 -10.20316 -10.12301 -10.00353 -9.99289 -9.81160 -8.87316 -8.63953 -8.29621 -7.53877 -6.41464 -4.11901 -0.43098 0.67010 1.11573 1.12937 2.81759 2.95679 3.42086 3.43654 3.61819 4.05975 4.28898 4.36229 4.45054 4.47165 4.61872 4.71896 4.89191 5.08108 5.17076 5.32002 5.38341 5.46669 5.55060 5.61777 5.66093 5.90954 5.99451 6.19358 6.21576 6.32167 6.52043 6.86064 6.92869 6.96006 7.14413 7.39878 7.45019 7.45332 7.77703 7.99826 8.42200 8.50433 8.81185 9.58633 10.96088 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.003264 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.614611 B = 8577.647110 C = 9741.230911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C 0.203 3.797 4 H -0.006 1.006 5 C -0.597 4.597 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 1.065 2.935 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.679 5.679 14 C 0.059 3.941 15 C 0.059 3.941 16 O -0.298 6.298 17 C 0.149 3.851 18 C -0.162 4.162 19 C -0.076 4.076 20 C -0.102 4.102 21 C -0.005 4.005 22 N 0.028 4.972 23 O -0.152 6.152 24 O -0.159 6.159 25 C -0.095 4.095 26 H 0.018 0.982 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.018 0.982 30 H 0.059 0.941 31 H 0.270 0.730 32 H 0.342 0.658 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 5.799 -19.054 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.145 4.145 3 C 0.095 3.905 4 H 0.011 0.989 5 C -0.636 4.636 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.544 5.544 9 Si 0.893 3.107 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.311 5.311 14 C -0.071 4.071 15 C -0.016 4.016 16 O -0.210 6.210 17 C 0.101 3.899 18 C -0.181 4.181 19 C -0.095 4.095 20 C -0.122 4.122 21 C -0.088 4.088 22 N 0.548 4.452 23 O -0.370 6.370 24 O -0.375 6.375 25 C -0.115 4.115 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.095 4.550 -17.477 18.518 hybrid contribution 0.654 0.738 -1.581 1.863 sum -3.441 5.288 -19.058 20.075 Atomic orbital electron populations 1.21428 0.96472 0.97902 1.01925 1.21510 0.96294 0.98292 0.98418 1.19259 0.92299 0.91243 0.87657 0.98863 1.21933 1.31303 1.18617 0.91716 0.92799 1.25715 0.94695 0.95987 1.01646 1.70816 1.21975 1.28891 1.32734 0.83589 0.75770 0.75754 0.75540 1.20837 1.21467 1.21326 1.60710 1.48614 1.16774 1.04994 1.22023 0.95691 0.98125 0.91237 1.23228 1.02019 0.76963 0.99371 1.86198 1.77854 1.17327 1.39657 1.18641 0.93561 0.89232 0.88465 1.21803 1.00823 1.02014 0.93447 1.20964 0.97776 0.91073 0.99643 1.20923 0.98776 0.97087 0.95394 1.20707 1.09880 0.79785 0.98383 1.43565 0.98085 1.03383 1.00150 1.94585 1.45741 1.82561 1.14089 1.94524 1.50537 1.52233 1.40213 1.20151 1.00731 0.89987 1.00603 0.96306 0.92064 0.93540 0.96367 0.92205 0.91889 0.84029 0.94861 0.89581 0.91777 0.90666 0.83443 0.83320 0.82971 0.82011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.52 37.16 0.35 -2.15 16 2 C -0.11 -2.39 5.49 -26.73 -0.15 -2.53 16 3 C 0.20 4.81 1.93 -68.87 -0.13 4.68 16 4 H -0.01 -0.16 7.08 -51.92 -0.37 -0.53 16 5 C -0.60 -15.90 7.24 -34.44 -0.25 -16.15 16 6 H 0.05 1.45 7.67 -52.48 -0.40 1.05 16 7 C 0.02 0.67 5.18 -17.82 -0.09 0.58 16 8 N -0.91 -26.41 13.04 55.43 0.72 -25.68 16 9 Si 1.07 24.69 29.91 -169.99 -5.09 19.60 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.68 -13.28 5.58 -107.95 -0.60 -13.88 16 14 C 0.06 0.91 5.95 -3.82 -0.02 0.89 16 15 C 0.06 0.68 5.07 37.16 0.19 0.87 16 16 O -0.30 -3.94 9.60 -19.41 -0.19 -4.13 16 17 C 0.15 1.67 6.69 -39.21 -0.26 1.40 16 18 C -0.16 -1.34 9.04 -39.43 -0.36 -1.69 16 19 C -0.08 -0.52 10.04 -39.61 -0.40 -0.92 16 20 C -0.10 -0.88 9.55 -39.56 -0.38 -1.26 16 21 C 0.00 -0.05 6.85 -79.98 -0.55 -0.60 16 22 N 0.03 0.37 4.45 33.95 0.15 0.52 16 23 O -0.15 -2.23 18.45 -29.46 -0.54 -2.77 16 24 O -0.16 -2.13 18.44 -29.46 -0.54 -2.67 16 25 C -0.10 -1.12 9.49 -39.43 -0.37 -1.50 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 1.40 7.12 -51.93 -0.37 1.03 16 28 H 0.05 0.91 7.70 -51.93 -0.40 0.51 16 29 H 0.02 0.36 7.64 -51.93 -0.40 -0.03 16 30 H 0.06 1.49 6.37 -51.93 -0.33 1.16 16 31 H 0.27 7.79 6.03 -40.82 -0.25 7.55 16 32 H 0.34 6.98 7.70 -39.29 -0.30 6.68 16 33 H 0.03 0.55 7.95 -51.93 -0.41 0.14 16 34 H 0.09 1.25 7.63 -51.93 -0.40 0.86 16 35 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 36 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 37 H 0.15 0.91 6.30 -52.48 -0.33 0.58 16 38 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 39 H 0.15 1.05 7.60 -52.49 -0.40 0.65 16 40 H 0.16 1.97 7.61 -52.49 -0.40 1.57 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -30.13 338.78 -8.59 -38.72 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.19 Total: 3.56 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -2.42 Total: -18.37 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.27 Total: -39.04 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -1.27 Total: -9.58 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.09 Total: 19.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.13 -8.59 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571892281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.736 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds