Wall clock time and date at job start Tue Mar 31 2020 06:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46787 * 2 1 4 4 H 1.09007 * 109.47124 * 181.79172 * 3 2 1 5 5 C 1.50700 * 109.47259 * 61.79613 * 3 2 1 6 6 H 1.08005 * 119.99898 * 244.97654 * 5 3 2 7 7 C 1.37875 * 120.00281 * 64.97621 * 5 3 2 8 8 N 1.31517 * 119.99637 * 9.72965 * 7 5 3 9 9 Si 1.86794 * 120.00226 * 189.72732 * 7 5 3 10 10 H 1.48508 * 109.47345 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47441 * 300.00139 * 9 7 5 12 12 H 1.48502 * 109.47266 * 60.00168 * 9 7 5 13 13 N 1.46899 * 109.47328 * 301.79365 * 3 2 1 14 14 C 1.46907 * 110.99887 * 274.11680 * 13 3 2 15 15 C 1.53003 * 109.46673 * 184.12694 * 14 13 3 16 16 O 1.42901 * 109.47136 * 65.00388 * 15 14 13 17 17 C 1.35895 * 116.99787 * 180.02562 * 16 15 14 18 18 C 1.38760 * 120.05886 * 359.71657 * 17 16 15 19 19 C 1.38120 * 119.94453 * 179.79571 * 18 17 16 20 20 C 1.38281 * 120.05809 * 0.48543 * 19 18 17 21 21 C 1.38244 * 120.11233 * 359.74315 * 20 19 18 22 22 N 1.48000 * 119.97554 * 179.97438 * 21 20 19 23 23 O 1.21803 * 120.00538 * 180.02562 * 22 21 20 24 24 O 1.21798 * 119.99928 * 0.03411 * 22 21 20 25 25 C 1.38173 * 120.05328 * 0.02958 * 21 20 19 26 26 H 1.09002 * 109.46917 * 184.51093 * 1 2 3 27 27 H 1.08995 * 109.47109 * 304.50835 * 1 2 3 28 28 H 1.08997 * 109.47093 * 64.51508 * 1 2 3 29 29 H 1.09004 * 109.46947 * 240.00292 * 2 1 3 30 30 H 1.08999 * 109.47310 * 119.99928 * 2 1 3 31 31 H 0.96997 * 120.00092 * 357.03712 * 8 7 5 32 32 H 1.00899 * 111.00242 * 150.16658 * 13 3 2 33 33 H 1.09001 * 109.47135 * 304.12579 * 14 13 3 34 34 H 1.08996 * 109.47226 * 64.12911 * 14 13 3 35 35 H 1.09004 * 109.46722 * 185.00000 * 15 14 13 36 36 H 1.08997 * 109.47445 * 304.99519 * 15 14 13 37 37 H 1.08003 * 120.02641 * 0.02562 * 18 17 16 38 38 H 1.08005 * 119.97065 * 180.22958 * 19 18 17 39 39 H 1.07996 * 119.94675 * 179.76732 * 20 19 18 40 40 H 1.07997 * 120.02597 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1295 1.4427 -0.0321 5 6 1.5743 2.1399 1.2521 6 1 0.8863 2.9697 1.1840 7 6 2.0265 1.7188 2.4846 8 7 3.0037 0.8420 2.5620 9 14 1.2513 2.3936 4.0444 10 1 1.9112 1.7861 5.2281 11 1 1.4222 3.8681 4.0843 12 1 -0.1962 2.0624 4.0612 13 7 1.5152 2.1474 -1.1771 14 6 2.3761 1.9308 -2.3476 15 6 1.8564 2.7604 -3.5234 16 8 1.9787 4.1507 -3.2164 17 6 1.5581 5.0308 -4.1626 18 6 1.0437 4.5659 -5.3645 19 6 0.6130 5.4624 -6.3229 20 6 0.7034 6.8224 -6.0894 21 6 1.2198 7.2882 -4.8947 22 7 1.3157 8.7444 -4.6482 23 8 1.7711 9.1555 -3.5960 24 8 0.9390 9.5319 -5.4976 25 6 1.6477 6.3954 -3.9308 26 1 -0.3633 -1.0245 0.0808 27 1 -0.3633 0.5822 0.8468 28 1 -0.3633 0.4422 -0.9276 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 3.3772 0.4594 1.7528 32 1 1.4026 3.1322 -0.9885 33 1 3.3954 2.2355 -2.1103 34 1 2.3658 0.8743 -2.6157 35 1 2.4405 2.5325 -4.4151 36 1 0.8090 2.5188 -3.7038 37 1 0.9767 3.5039 -5.5490 38 1 0.2091 5.1010 -7.2571 39 1 0.3695 7.5219 -6.8415 40 1 2.0515 6.7598 -2.9978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571892281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:17 Heat of formation + Delta-G solvation = -41.039494 kcal Electronic energy + Delta-G solvation = -22970.967236 eV Core-core repulsion = 19367.461185 eV Total energy + Delta-G solvation = -3603.506051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.34373 -41.42082 -39.09348 -38.14120 -37.76003 -34.93769 -33.04457 -32.94612 -31.59063 -29.87201 -27.84214 -27.07407 -25.37618 -24.16514 -23.98829 -22.59556 -21.25913 -20.62395 -19.84131 -19.05134 -18.70535 -18.26936 -17.46520 -17.19012 -17.08833 -16.18745 -15.85662 -15.68832 -15.34457 -15.17261 -14.75897 -14.24288 -14.18166 -13.69270 -13.48837 -13.30663 -13.09764 -13.00611 -12.75724 -12.64626 -12.46993 -12.38179 -12.21606 -12.17300 -11.98139 -11.88390 -11.76738 -11.55646 -10.68931 -10.65231 -10.36089 -9.65942 -9.19793 -8.60358 -6.30511 -1.33993 -0.03265 0.22914 0.24354 1.52611 1.58868 1.77828 1.96334 2.24158 2.55247 3.19497 3.38523 3.42853 3.58273 3.64956 3.73348 3.92656 4.02001 4.18521 4.27151 4.33208 4.43083 4.55283 4.64047 4.68313 4.73245 4.80630 4.88085 4.96313 5.02380 5.04757 5.19393 5.33204 5.37059 5.55111 5.70385 5.87181 6.06617 6.13493 6.39741 6.46993 6.56257 6.78136 7.47690 8.77718 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.003264 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.614611 B = 8577.647110 C = 9741.230911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C 0.206 3.794 4 H -0.041 1.041 5 C -0.602 4.602 6 H 0.046 0.954 7 C -0.023 4.023 8 N -0.934 5.934 9 Si 1.106 2.894 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.271 1.271 13 N -0.672 5.672 14 C 0.055 3.945 15 C 0.066 3.934 16 O -0.329 6.329 17 C 0.131 3.869 18 C -0.145 4.145 19 C -0.058 4.058 20 C -0.092 4.092 21 C -0.022 4.022 22 N 0.029 4.971 23 O -0.210 6.210 24 O -0.142 6.142 25 C -0.119 4.119 26 H 0.041 0.959 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.029 0.971 31 H 0.259 0.741 32 H 0.334 0.666 33 H 0.014 0.986 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.179 0.821 38 H 0.197 0.803 39 H 0.174 0.826 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 4.888 -22.308 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C 0.097 3.903 4 H -0.024 1.024 5 C -0.641 4.641 6 H 0.064 0.936 7 C -0.222 4.222 8 N -0.571 5.571 9 Si 0.929 3.071 10 H -0.211 1.211 11 H -0.202 1.202 12 H -0.196 1.196 13 N -0.303 5.303 14 C -0.074 4.074 15 C -0.008 4.008 16 O -0.243 6.243 17 C 0.084 3.916 18 C -0.164 4.164 19 C -0.076 4.076 20 C -0.111 4.111 21 C -0.105 4.105 22 N 0.545 4.455 23 O -0.415 6.415 24 O -0.366 6.366 25 C -0.139 4.139 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.032 0.968 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.196 0.804 38 H 0.214 0.786 39 H 0.192 0.808 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.990 3.649 -20.664 21.822 hybrid contribution 1.224 1.003 -0.787 1.768 sum -4.766 4.652 -21.452 22.462 Atomic orbital electron populations 1.21316 0.94872 0.99006 1.01490 1.21387 0.97558 0.96997 0.98015 1.19093 0.90230 0.92452 0.88492 1.02358 1.22248 1.30412 1.18235 0.93161 0.93579 1.26957 0.94551 0.95836 1.04875 1.70919 1.23521 1.30509 1.32200 0.83056 0.75836 0.75821 0.72369 1.21147 1.20222 1.19587 1.60656 1.49202 1.15774 1.04654 1.22149 0.94206 0.99989 0.91070 1.23189 1.03387 0.75863 0.98380 1.86138 1.78761 1.18167 1.41252 1.18748 0.94957 0.88366 0.89508 1.22205 0.98472 1.03891 0.91823 1.21513 0.95774 0.89640 1.00699 1.21383 0.96891 0.98627 0.94172 1.20864 1.11927 0.77978 0.99769 1.43903 0.97465 1.04457 0.99710 1.94592 1.48428 1.83342 1.15121 1.94470 1.49197 1.53198 1.39705 1.20076 1.02338 0.91028 1.00441 0.94043 0.94702 0.92003 0.94047 0.95269 0.93043 0.84932 0.96793 0.88205 0.87947 0.89070 0.80415 0.78584 0.80825 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 9.52 71.98 0.69 -3.72 16 2 C -0.10 -4.51 5.49 30.59 0.17 -4.34 16 3 C 0.21 9.96 1.93 44.17 0.09 10.05 16 4 H -0.04 -2.23 7.08 -2.38 -0.02 -2.25 16 5 C -0.60 -32.80 7.24 25.60 0.19 -32.61 16 6 H 0.05 2.53 7.67 -2.91 -0.02 2.51 16 7 C -0.02 -1.29 5.18 84.65 0.44 -0.85 16 8 N -0.93 -55.94 13.04 21.45 0.28 -55.66 16 9 Si 1.11 50.28 29.91 68.60 2.05 52.33 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 N -0.67 -26.17 5.58 -495.43 -2.76 -28.93 16 14 C 0.06 1.65 5.95 86.30 0.51 2.16 16 15 C 0.07 1.34 5.07 71.98 0.36 1.70 16 16 O -0.33 -8.46 9.60 -92.37 -0.89 -9.34 16 17 C 0.13 2.74 6.69 22.51 0.15 2.89 16 18 C -0.15 -1.75 9.04 22.37 0.20 -1.55 16 19 C -0.06 -0.48 10.04 22.25 0.22 -0.26 16 20 C -0.09 -1.25 9.55 22.28 0.21 -1.04 16 21 C -0.02 -0.50 6.85 36.36 0.25 -0.25 16 22 N 0.03 0.79 4.45 -46.51 -0.21 0.58 16 23 O -0.21 -6.69 18.45 18.88 0.35 -6.34 16 24 O -0.14 -3.70 18.44 18.89 0.35 -3.35 16 25 C -0.12 -2.89 9.49 22.37 0.21 -2.67 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 1.56 7.12 -2.39 -0.02 1.54 16 28 H 0.06 2.27 7.70 -2.39 -0.02 2.25 16 29 H 0.04 1.63 7.64 -2.38 -0.02 1.61 16 30 H 0.03 1.47 6.37 -2.39 -0.02 1.45 16 31 H 0.26 15.62 6.03 -92.71 -0.56 15.07 16 32 H 0.33 13.86 7.70 -89.69 -0.69 13.17 16 33 H 0.01 0.47 7.95 -2.39 -0.02 0.45 16 34 H 0.10 2.68 7.63 -2.39 -0.02 2.66 16 35 H 0.10 1.31 7.65 -2.38 -0.02 1.29 16 36 H 0.09 1.57 7.67 -2.39 -0.02 1.55 16 37 H 0.18 1.07 6.30 -2.91 -0.02 1.05 16 38 H 0.20 -0.10 8.06 -2.91 -0.02 -0.13 16 39 H 0.17 1.65 7.60 -2.91 -0.02 1.62 16 40 H 0.14 3.85 7.61 -2.91 -0.02 3.83 16 Total: -1.00 -69.90 338.78 3.45 -66.46 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.58 Total: 14.75 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.69 Total: -30.49 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.69 Total: -84.01 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.19 Total: -19.04 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Total: -69.90 3.45 -66.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571892281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.418 kcal (2) G-P(sol) polarization free energy of solvation -69.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds