Wall clock time and date at job start Tue Mar 31 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08994 * 109.47262 * 177.97032 * 3 2 1 5 5 C 1.50693 * 109.47299 * 57.96439 * 3 2 1 6 6 H 1.08003 * 120.00378 * 240.00042 * 5 3 2 7 7 C 1.37878 * 120.00111 * 59.99966 * 5 3 2 8 8 N 1.31509 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00175 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47043 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47166 * 120.00205 * 9 7 5 12 12 H 1.48496 * 109.46964 * 240.00357 * 9 7 5 13 13 N 1.46905 * 109.47028 * 297.96478 * 3 2 1 14 14 C 1.46895 * 110.99921 * 273.75757 * 13 3 2 15 15 C 1.50703 * 109.47130 * 174.74788 * 14 13 3 16 16 C 1.38169 * 120.02804 * 259.72121 * 15 14 13 17 17 C 1.38243 * 120.05302 * 179.72104 * 16 15 14 18 18 C 1.38286 * 120.11326 * 0.55299 * 17 16 15 19 19 N 1.48009 * 119.97070 * 179.70267 * 18 17 16 20 20 O 1.21801 * 119.99284 * 180.02562 * 19 18 17 21 21 O 1.21789 * 120.00122 * 0.02562 * 19 18 17 22 22 C 1.38124 * 120.05661 * 359.72556 * 18 17 16 23 23 C 1.38706 * 120.02963 * 79.99775 * 15 14 13 24 24 O 1.35903 * 120.05561 * 359.97438 * 23 15 14 25 25 C 1.42895 * 117.00273 * 180.02562 * 24 23 15 26 26 H 1.09001 * 109.47282 * 54.45419 * 1 2 3 27 27 H 1.09003 * 109.47212 * 294.45236 * 1 2 3 28 28 H 1.09002 * 109.47027 * 174.45315 * 1 2 3 29 29 H 1.08997 * 109.47288 * 119.99753 * 2 1 3 30 30 H 1.08999 * 109.47123 * 240.00081 * 2 1 3 31 31 H 0.96998 * 120.00194 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99996 * 149.79860 * 13 3 2 33 33 H 1.09002 * 109.47243 * 294.74560 * 14 13 3 34 34 H 1.09001 * 109.47481 * 54.74529 * 14 13 3 35 35 H 1.08003 * 119.97149 * 0.02562 * 16 15 14 36 36 H 1.08004 * 119.94080 * 180.25606 * 17 16 15 37 37 H 1.08000 * 120.02899 * 180.02562 * 22 18 17 38 38 H 1.09000 * 109.47714 * 59.99423 * 25 24 23 39 39 H 1.08999 * 109.47519 * 179.97438 * 25 24 23 40 40 H 1.09007 * 109.46765 * 299.99560 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 0.0364 5 6 1.4969 2.1673 1.2044 6 1 0.8798 3.0441 1.0742 7 6 1.7878 1.7112 2.4726 8 7 2.5396 0.6440 2.6312 9 14 1.1152 2.6101 3.9656 10 1 0.3043 3.7717 3.5202 11 1 0.2632 1.6867 4.7571 12 1 2.2429 3.0863 4.8063 13 7 1.5908 2.1207 -1.2233 14 6 2.5280 1.8856 -2.3298 15 6 1.9716 2.4856 -3.5954 16 6 1.3465 1.6786 -4.5265 17 6 0.8308 2.2294 -5.6849 18 6 0.9493 3.5869 -5.9202 19 7 0.4019 4.1722 -7.1646 20 8 0.5064 5.3678 -7.3724 21 8 -0.1530 3.4584 -7.9805 22 6 1.5784 4.3970 -4.9952 23 6 2.0918 3.8475 -3.8291 24 8 2.7108 4.6426 -2.9171 25 6 2.7976 6.0356 -3.2237 26 1 -0.3634 0.5974 -0.8362 27 1 -0.3634 0.4254 0.9355 28 1 -0.3633 -1.0229 -0.0993 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.7439 0.3228 3.5234 32 1 1.4615 3.1083 -1.0626 33 1 3.4868 2.3496 -2.0987 34 1 2.6669 0.8132 -2.4667 35 1 1.2562 0.6175 -4.3469 36 1 0.3388 1.5975 -6.4096 37 1 1.6703 5.4573 -5.1792 38 1 1.7943 6.4461 -3.3370 39 1 3.3128 6.5542 -2.4151 40 1 3.3519 6.1692 -4.1528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579608187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:44 Heat of formation + Delta-G solvation = -19.023734 kcal Electronic energy + Delta-G solvation = -23641.526949 eV Core-core repulsion = 20038.975574 eV Total energy + Delta-G solvation = -3602.551376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.26582 -40.55850 -37.84768 -36.63417 -36.41736 -33.61590 -31.75443 -30.76612 -30.26084 -27.90729 -27.46536 -25.87031 -23.88485 -23.17683 -22.73719 -21.57255 -19.74652 -19.10556 -18.79676 -17.61501 -17.13621 -16.72138 -16.39822 -16.00881 -15.61502 -14.95031 -14.47091 -14.28475 -13.93958 -13.73347 -13.28299 -12.94067 -12.45719 -12.42927 -12.04605 -11.96529 -11.69631 -11.61894 -11.54180 -11.37786 -11.23152 -11.13197 -10.99041 -10.77992 -10.46707 -10.19639 -9.83605 -9.52621 -9.42582 -8.87055 -8.66573 -8.53781 -7.39568 -6.09028 -4.14250 -0.25113 0.88999 1.30554 1.31703 2.94510 3.17953 3.23445 3.32266 3.35631 4.25919 4.33384 4.37653 4.50682 4.69005 4.84245 4.93930 5.05402 5.21766 5.22693 5.31687 5.40226 5.54226 5.59186 5.73238 5.97087 6.15265 6.22027 6.34610 6.44754 6.62744 6.77522 6.96972 7.14408 7.18294 7.41000 7.57016 7.65364 7.71303 7.75681 8.15575 8.26318 8.54120 8.93543 9.50702 10.97103 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.003701 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.857083 B = 7564.604414 C = 8216.961746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.003 0.997 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.095 3.905 15 C -0.036 4.036 16 C -0.069 4.069 17 C -0.088 4.088 18 C -0.018 4.018 19 N 0.033 4.967 20 O -0.170 6.170 21 O -0.162 6.162 22 C -0.154 4.154 23 C 0.137 3.863 24 O -0.295 6.295 25 C 0.022 3.978 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.013 0.987 29 H 0.086 0.914 30 H 0.010 0.990 31 H 0.260 0.740 32 H 0.336 0.664 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 5.115 -13.664 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.309 5.309 14 C -0.035 4.035 15 C -0.038 4.038 16 C -0.088 4.088 17 C -0.107 4.107 18 C -0.101 4.101 19 N 0.551 4.449 20 O -0.384 6.384 21 O -0.378 6.378 22 C -0.174 4.174 23 C 0.089 3.911 24 O -0.207 6.207 25 C -0.073 4.073 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.105 0.895 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.173 0.827 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.604 4.178 -12.887 13.561 hybrid contribution 0.173 1.437 0.608 1.570 sum 0.776 5.616 -12.280 13.525 Atomic orbital electron populations 1.21442 0.97462 0.97172 1.01613 1.21439 0.95128 0.98104 0.99386 1.19156 0.93485 0.91602 0.84830 0.97951 1.21179 1.31686 1.11971 0.90242 0.92288 1.24865 0.95034 0.95001 0.98845 1.69884 1.37337 1.23099 1.22368 0.86526 0.78754 0.79803 0.82860 1.19794 1.20974 1.21115 1.60813 1.46163 1.16841 1.07038 1.20876 0.94448 1.00012 0.88120 1.20042 0.96225 0.89965 0.97563 1.20993 0.95492 1.01177 0.91173 1.20969 0.98999 0.91930 0.98812 1.20700 1.07594 0.94314 0.87519 1.43630 0.98409 1.00761 1.02137 1.94515 1.62628 0.98488 1.82804 1.94521 1.42389 1.59854 1.41024 1.20916 1.01222 1.01668 0.93566 1.18633 0.93685 0.90849 0.87893 1.86245 1.72439 1.19771 1.42291 1.23206 1.02296 0.78878 1.02954 0.93500 0.92932 0.96797 0.89547 0.97143 0.92958 0.84689 0.93934 0.90112 0.82673 0.82984 0.82837 0.92190 0.87393 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.46 37.16 0.35 -2.20 16 2 C -0.10 -2.32 5.58 -26.73 -0.15 -2.47 16 3 C 0.22 5.04 2.30 -68.86 -0.16 4.88 16 4 H 0.00 0.07 7.84 -51.93 -0.41 -0.33 16 5 C -0.51 -13.14 7.33 -34.44 -0.25 -13.40 16 6 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.21 11.34 55.43 0.63 -23.59 16 9 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -13.09 5.50 -109.22 -0.60 -13.69 16 14 C 0.09 1.51 5.25 -4.98 -0.03 1.49 16 15 C -0.04 -0.49 5.45 -104.47 -0.57 -1.06 16 16 C -0.07 -0.79 9.67 -39.60 -0.38 -1.18 16 17 C -0.09 -0.99 9.55 -39.56 -0.38 -1.37 16 18 C -0.02 -0.23 6.85 -79.98 -0.55 -0.78 16 19 N 0.03 0.46 4.45 33.95 0.15 0.61 16 20 O -0.17 -2.46 18.45 -29.46 -0.54 -3.01 16 21 O -0.16 -2.32 18.44 -29.46 -0.54 -2.86 16 22 C -0.15 -1.85 8.54 -39.43 -0.34 -2.19 16 23 C 0.14 1.77 6.66 -39.22 -0.26 1.51 16 24 O -0.30 -3.82 9.70 -19.43 -0.19 -4.01 16 25 C 0.02 0.19 9.81 101.05 0.99 1.18 16 26 H 0.05 0.96 7.50 -51.93 -0.39 0.57 16 27 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 2.21 6.13 -51.93 -0.32 1.89 16 30 H 0.01 0.21 7.43 -51.93 -0.39 -0.18 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.34 6.64 8.21 -39.29 -0.32 6.32 16 33 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 34 H 0.08 1.25 7.25 -51.93 -0.38 0.87 16 35 H 0.16 1.49 8.03 -52.48 -0.42 1.07 16 36 H 0.15 1.44 7.61 -52.48 -0.40 1.04 16 37 H 0.15 1.60 5.85 -52.49 -0.31 1.30 16 38 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -28.32 339.08 -8.11 -36.44 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.29 Total: 3.46 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.81 Total: -13.98 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.18 Total: -36.66 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.28 Total: -9.88 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.32 -8.11 -36.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579608187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.413 kcal (2) G-P(sol) polarization free energy of solvation -28.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds