Wall clock time and date at job start Tue Mar 31 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08994 * 109.47262 * 177.97032 * 3 2 1 5 5 C 1.50693 * 109.47299 * 57.96439 * 3 2 1 6 6 H 1.08003 * 120.00378 * 240.00042 * 5 3 2 7 7 C 1.37878 * 120.00111 * 59.99966 * 5 3 2 8 8 N 1.31509 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00175 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47043 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47166 * 120.00205 * 9 7 5 12 12 H 1.48496 * 109.46964 * 240.00357 * 9 7 5 13 13 N 1.46905 * 109.47028 * 297.96478 * 3 2 1 14 14 C 1.46895 * 110.99921 * 273.75757 * 13 3 2 15 15 C 1.50703 * 109.47130 * 174.74788 * 14 13 3 16 16 C 1.38169 * 120.02804 * 259.72121 * 15 14 13 17 17 C 1.38243 * 120.05302 * 179.72104 * 16 15 14 18 18 C 1.38286 * 120.11326 * 0.55299 * 17 16 15 19 19 N 1.48009 * 119.97070 * 179.70267 * 18 17 16 20 20 O 1.21801 * 119.99284 * 180.02562 * 19 18 17 21 21 O 1.21789 * 120.00122 * 0.02562 * 19 18 17 22 22 C 1.38124 * 120.05661 * 359.72556 * 18 17 16 23 23 C 1.38706 * 120.02963 * 79.99775 * 15 14 13 24 24 O 1.35903 * 120.05561 * 359.97438 * 23 15 14 25 25 C 1.42895 * 117.00273 * 180.02562 * 24 23 15 26 26 H 1.09001 * 109.47282 * 54.45419 * 1 2 3 27 27 H 1.09003 * 109.47212 * 294.45236 * 1 2 3 28 28 H 1.09002 * 109.47027 * 174.45315 * 1 2 3 29 29 H 1.08997 * 109.47288 * 119.99753 * 2 1 3 30 30 H 1.08999 * 109.47123 * 240.00081 * 2 1 3 31 31 H 0.96998 * 120.00194 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99996 * 149.79860 * 13 3 2 33 33 H 1.09002 * 109.47243 * 294.74560 * 14 13 3 34 34 H 1.09001 * 109.47481 * 54.74529 * 14 13 3 35 35 H 1.08003 * 119.97149 * 0.02562 * 16 15 14 36 36 H 1.08004 * 119.94080 * 180.25606 * 17 16 15 37 37 H 1.08000 * 120.02899 * 180.02562 * 22 18 17 38 38 H 1.09000 * 109.47714 * 59.99423 * 25 24 23 39 39 H 1.08999 * 109.47519 * 179.97438 * 25 24 23 40 40 H 1.09007 * 109.46765 * 299.99560 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 0.0364 5 6 1.4969 2.1673 1.2044 6 1 0.8798 3.0441 1.0742 7 6 1.7878 1.7112 2.4726 8 7 2.5396 0.6440 2.6312 9 14 1.1152 2.6101 3.9656 10 1 0.3043 3.7717 3.5202 11 1 0.2632 1.6867 4.7571 12 1 2.2429 3.0863 4.8063 13 7 1.5908 2.1207 -1.2233 14 6 2.5280 1.8856 -2.3298 15 6 1.9716 2.4856 -3.5954 16 6 1.3465 1.6786 -4.5265 17 6 0.8308 2.2294 -5.6849 18 6 0.9493 3.5869 -5.9202 19 7 0.4019 4.1722 -7.1646 20 8 0.5064 5.3678 -7.3724 21 8 -0.1530 3.4584 -7.9805 22 6 1.5784 4.3970 -4.9952 23 6 2.0918 3.8475 -3.8291 24 8 2.7108 4.6426 -2.9171 25 6 2.7976 6.0356 -3.2237 26 1 -0.3634 0.5974 -0.8362 27 1 -0.3634 0.4254 0.9355 28 1 -0.3633 -1.0229 -0.0993 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.7439 0.3228 3.5234 32 1 1.4615 3.1083 -1.0626 33 1 3.4868 2.3496 -2.0987 34 1 2.6669 0.8132 -2.4667 35 1 1.2562 0.6175 -4.3469 36 1 0.3388 1.5975 -6.4096 37 1 1.6703 5.4573 -5.1792 38 1 1.7943 6.4461 -3.3370 39 1 3.3128 6.5542 -2.4151 40 1 3.3519 6.1692 -4.1528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579608187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:44 Heat of formation + Delta-G solvation = -34.723448 kcal Electronic energy + Delta-G solvation = -23642.207740 eV Core-core repulsion = 20038.975574 eV Total energy + Delta-G solvation = -3603.232166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31838 -41.52407 -38.80801 -38.03291 -37.71438 -35.10706 -33.39536 -31.99898 -31.49295 -29.04775 -28.57307 -27.40212 -25.35319 -24.79182 -23.65563 -22.67489 -20.91325 -20.72329 -19.85472 -18.67278 -18.54663 -17.95993 -17.42845 -17.02383 -16.82360 -16.65089 -15.84158 -15.42715 -15.28608 -15.01158 -14.77589 -14.08081 -13.95363 -13.80776 -13.42008 -13.09794 -12.88535 -12.81180 -12.75078 -12.65427 -12.53634 -12.39616 -12.34006 -12.33447 -12.15787 -11.90820 -11.58981 -11.27471 -10.79035 -10.55576 -10.45666 -9.62884 -9.02306 -8.09181 -6.20095 -1.29807 -0.02139 0.26285 0.29434 1.40032 1.43860 1.53158 2.10167 2.21531 2.43401 3.20531 3.35716 3.37029 3.57755 3.66358 3.91211 4.04096 4.20760 4.30133 4.35417 4.44861 4.60327 4.65809 4.70253 4.72315 4.80266 4.84588 4.98477 5.10167 5.15017 5.33582 5.35987 5.41721 5.59254 5.72920 5.84979 5.92482 6.09048 6.30592 6.46544 6.47195 6.76905 7.01554 7.48361 8.95926 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.003701 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.857083 B = 7564.604414 C = 8216.961746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.031 1.031 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.670 5.670 14 C 0.101 3.899 15 C -0.052 4.052 16 C -0.059 4.059 17 C -0.081 4.081 18 C -0.026 4.026 19 N 0.033 4.967 20 O -0.184 6.184 21 O -0.166 6.166 22 C -0.151 4.151 23 C 0.134 3.866 24 O -0.319 6.319 25 C 0.012 3.988 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.332 0.668 33 H 0.031 0.969 34 H 0.087 0.913 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.068 0.932 39 H 0.120 0.880 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 5.282 -14.666 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.114 3.886 4 H -0.014 1.014 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.301 5.301 14 C -0.028 4.028 15 C -0.053 4.053 16 C -0.078 4.078 17 C -0.100 4.100 18 C -0.109 4.109 19 N 0.548 4.452 20 O -0.396 6.396 21 O -0.382 6.382 22 C -0.171 4.171 23 C 0.086 3.914 24 O -0.231 6.231 25 C -0.082 4.082 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.195 0.805 36 H 0.191 0.809 37 H 0.185 0.815 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.180 4.377 -13.913 14.587 hybrid contribution 0.453 1.407 0.864 1.712 sum 0.273 5.784 -13.050 14.277 Atomic orbital electron populations 1.21308 0.96165 0.98486 1.00550 1.21310 0.96147 0.97401 0.98798 1.18929 0.91283 0.92346 0.85995 1.01370 1.21445 1.31265 1.11847 0.91385 0.92802 1.25539 0.95394 0.95681 1.01304 1.70007 1.38403 1.24252 1.22744 0.85643 0.78112 0.78816 0.79885 1.19291 1.20906 1.20946 1.60716 1.46893 1.16226 1.06228 1.20788 0.93424 1.00505 0.88093 1.19906 0.97767 0.90577 0.97089 1.21201 0.94144 1.02007 0.90414 1.21202 0.98319 0.91531 0.98928 1.20898 1.07932 0.95032 0.87057 1.43809 0.98239 1.00677 1.02438 1.94512 1.63111 0.98817 1.83147 1.94510 1.42515 1.59762 1.41439 1.20995 1.00731 1.02378 0.92992 1.18677 0.93737 0.90812 0.88146 1.86221 1.72473 1.21577 1.42875 1.23478 1.03297 0.77056 1.04320 0.92595 0.95438 0.94638 0.92614 0.95197 0.93066 0.85114 0.95134 0.89476 0.80475 0.80890 0.81533 0.91363 0.86204 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 9.46 71.98 0.68 -3.78 16 2 C -0.10 -4.42 5.58 30.59 0.17 -4.25 16 3 C 0.22 10.46 2.30 44.17 0.10 10.56 16 4 H -0.03 -1.66 7.84 -2.39 -0.02 -1.67 16 5 C -0.52 -26.95 7.33 25.60 0.19 -26.76 16 6 H 0.05 2.79 7.60 -2.91 -0.02 2.76 16 7 C 0.02 1.07 5.30 84.66 0.45 1.52 16 8 N -0.91 -50.65 11.34 21.45 0.24 -50.40 16 9 Si 0.95 42.27 29.54 68.60 2.03 44.29 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 N -0.67 -25.60 5.50 -499.47 -2.74 -28.34 16 14 C 0.10 3.15 5.25 85.56 0.45 3.60 16 15 C -0.05 -1.32 5.45 -19.77 -0.11 -1.42 16 16 C -0.06 -1.19 9.67 22.25 0.22 -0.98 16 17 C -0.08 -1.59 9.55 22.28 0.21 -1.38 16 18 C -0.03 -0.61 6.85 36.36 0.25 -0.36 16 19 N 0.03 0.86 4.45 -46.51 -0.21 0.65 16 20 O -0.18 -5.08 18.45 18.89 0.35 -4.73 16 21 O -0.17 -4.45 18.44 18.90 0.35 -4.11 16 22 C -0.15 -3.38 8.54 22.37 0.19 -3.18 16 23 C 0.13 3.29 6.66 22.51 0.15 3.44 16 24 O -0.32 -8.01 9.70 -92.45 -0.90 -8.90 16 25 C 0.01 0.20 9.81 113.37 1.11 1.31 16 26 H 0.06 2.19 7.50 -2.39 -0.02 2.17 16 27 H 0.03 1.24 7.37 -2.39 -0.02 1.23 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.06 2.88 6.13 -2.39 -0.01 2.87 16 30 H 0.03 1.20 7.43 -2.39 -0.02 1.18 16 31 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 32 H 0.33 13.09 8.21 -89.69 -0.74 12.36 16 33 H 0.03 1.03 7.85 -2.39 -0.02 1.01 16 34 H 0.09 2.58 7.25 -2.39 -0.02 2.56 16 35 H 0.18 2.77 8.03 -2.91 -0.02 2.75 16 36 H 0.17 2.69 7.61 -2.91 -0.02 2.66 16 37 H 0.17 3.18 5.85 -2.91 -0.02 3.16 16 38 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 39 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 0.94 7.66 -2.38 -0.02 0.93 16 Total: -1.00 -60.43 339.08 3.51 -56.92 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.33 Total: 16.32 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 4.06 Total: -21.69 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -2.71 Total: -78.10 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.20 Total: -17.74 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -60.43 3.51 -56.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579608187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.197 kcal (2) G-P(sol) polarization free energy of solvation -60.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds