Wall clock time and date at job start Tue Mar 31 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 H 1.08995 * 109.46789 * 179.90733 * 3 2 1 5 5 C 1.50699 * 109.47261 * 299.90462 * 3 2 1 6 6 H 1.08003 * 120.00027 * 119.99939 * 5 3 2 7 7 C 1.37882 * 119.99970 * 300.00601 * 5 3 2 8 8 N 1.31512 * 120.00277 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99895 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47432 * 89.99468 * 9 7 5 11 11 H 1.48499 * 109.47023 * 209.99453 * 9 7 5 12 12 H 1.48498 * 109.47368 * 329.99542 * 9 7 5 13 13 N 1.46901 * 109.47289 * 59.90563 * 3 2 1 14 14 C 1.46899 * 110.99520 * 85.97041 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.52859 * 14 13 3 16 16 C 1.38172 * 120.02809 * 259.72649 * 15 14 13 17 17 C 1.38246 * 120.04937 * 179.72379 * 16 15 14 18 18 C 1.38287 * 120.11452 * 0.55391 * 17 16 15 19 19 N 1.48005 * 119.96861 * 179.70418 * 18 17 16 20 20 O 1.21803 * 119.99619 * 180.02562 * 19 18 17 21 21 O 1.21800 * 120.00545 * 0.02562 * 19 18 17 22 22 C 1.38111 * 120.05521 * 359.72383 * 18 17 16 23 23 C 1.38710 * 120.02729 * 80.00360 * 15 14 13 24 24 O 1.35899 * 120.05713 * 359.97438 * 23 15 14 25 25 C 1.42894 * 117.00302 * 179.97438 * 24 23 15 26 26 H 1.08997 * 109.47427 * 175.59648 * 1 2 3 27 27 H 1.08997 * 109.47138 * 55.59632 * 1 2 3 28 28 H 1.09001 * 109.46996 * 295.59645 * 1 2 3 29 29 H 1.08994 * 109.47157 * 120.00249 * 2 1 3 30 30 H 1.09004 * 109.46781 * 240.00384 * 2 1 3 31 31 H 0.96998 * 120.00292 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99908 * 209.92708 * 13 3 2 33 33 H 1.08995 * 109.47219 * 295.52690 * 14 13 3 34 34 H 1.08999 * 109.47280 * 55.53367 * 14 13 3 35 35 H 1.07992 * 119.97298 * 0.02562 * 16 15 14 36 36 H 1.08006 * 119.93723 * 180.25248 * 17 16 15 37 37 H 1.08002 * 120.02604 * 180.02562 * 22 18 17 38 38 H 1.09004 * 109.47419 * 180.02562 * 25 24 23 39 39 H 1.08997 * 109.47112 * 300.00050 * 25 24 23 40 40 H 1.09005 * 109.47089 * 59.99987 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0017 5 6 1.5396 2.1523 -1.2316 6 1 0.9185 3.0304 -1.1340 7 6 1.8746 1.6804 -2.4832 8 7 2.6312 0.6114 -2.6021 9 14 1.2537 2.5598 -4.0098 10 1 2.2320 3.6016 -4.4133 11 1 1.0907 1.5799 -5.1136 12 1 -0.0551 3.1970 -3.7162 13 7 1.5485 2.1357 1.1983 14 6 2.4429 1.9092 2.3414 15 6 1.9684 2.7214 3.5189 16 6 2.5862 3.9183 3.8272 17 6 2.1477 4.6665 4.9038 18 6 1.0976 4.2139 5.6815 19 7 0.6350 5.0143 6.8373 20 8 -0.2896 4.6160 7.5229 21 8 1.1787 6.0714 7.1029 22 6 0.4805 3.0154 5.3809 23 6 0.9149 2.2653 4.2974 24 8 0.3090 1.0860 3.9993 25 6 -0.7686 0.6783 4.8445 26 1 -0.3634 -1.0246 -0.0789 27 1 -0.3633 0.5806 -0.8479 28 1 -0.3633 0.4440 0.9268 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.8671 0.2797 -3.4825 32 1 1.4293 3.1221 1.0221 33 1 2.4366 0.8513 2.6036 34 1 3.4558 2.2119 2.0758 35 1 3.4091 4.2718 3.2238 36 1 2.6292 5.6037 5.1408 37 1 -0.3398 2.6626 5.9883 38 1 -1.1617 -0.2771 4.4970 39 1 -0.4077 0.5717 5.8675 40 1 -1.5582 1.4292 4.8143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579608188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:47 Heat of formation + Delta-G solvation = -17.633058 kcal Electronic energy + Delta-G solvation = -23700.045885 eV Core-core repulsion = 20097.554813 eV Total energy + Delta-G solvation = -3602.491071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.26889 -40.50888 -37.81638 -36.63731 -36.40716 -33.62382 -31.75675 -30.72187 -30.25661 -27.87646 -27.41448 -25.87257 -23.89605 -23.13419 -22.73327 -21.56710 -19.73222 -19.10265 -18.79776 -17.61925 -17.05704 -16.79195 -16.38470 -15.92733 -15.59580 -14.92515 -14.53157 -14.06185 -13.89222 -13.76773 -13.27149 -12.94257 -12.54651 -12.36047 -12.00924 -11.93711 -11.74185 -11.58853 -11.47829 -11.38594 -11.23597 -11.12190 -10.97568 -10.78769 -10.45675 -10.14737 -9.81739 -9.56101 -9.39848 -8.86640 -8.60748 -8.53114 -7.37186 -6.09006 -4.14929 -0.26388 0.88901 1.29961 1.30967 3.02881 3.17512 3.24114 3.31912 3.35096 4.25160 4.33417 4.38490 4.50766 4.67049 4.88133 4.99837 5.06629 5.19457 5.21911 5.37084 5.38193 5.51220 5.57622 5.78672 5.94834 6.16936 6.19595 6.33724 6.50356 6.65243 6.81471 7.06645 7.19380 7.22579 7.42232 7.56321 7.68619 7.71110 7.76901 8.16867 8.27613 8.54019 8.92975 9.50202 10.96721 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.003701 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.168053 B = 7564.251849 C = 8206.527062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.673 5.673 14 C 0.098 3.902 15 C -0.048 4.048 16 C -0.080 4.080 17 C -0.091 4.091 18 C -0.015 4.015 19 N 0.032 4.968 20 O -0.169 6.169 21 O -0.162 6.162 22 C -0.159 4.159 23 C 0.156 3.844 24 O -0.280 6.280 25 C 0.020 3.980 26 H 0.012 0.988 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 2.321 14.508 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.304 5.304 14 C -0.031 4.031 15 C -0.049 4.049 16 C -0.099 4.099 17 C -0.110 4.110 18 C -0.098 4.098 19 N 0.550 4.450 20 O -0.383 6.383 21 O -0.378 6.378 22 C -0.179 4.179 23 C 0.108 3.892 24 O -0.191 6.191 25 C -0.075 4.075 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.029 0.971 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.974 1.127 13.811 13.996 hybrid contribution 0.089 1.239 -0.541 1.355 sum -1.885 2.366 13.270 13.610 Atomic orbital electron populations 1.21436 0.97477 0.97330 1.01371 1.21410 0.95104 0.98027 0.99406 1.19178 0.92997 0.91597 0.85210 0.98051 1.21153 1.31838 1.12033 0.90254 0.92319 1.24870 0.94992 0.94951 0.98912 1.69875 1.36549 1.22636 1.23561 0.86579 0.79268 0.79353 0.82706 1.20787 1.21201 1.19869 1.60812 1.47992 1.15877 1.05708 1.20911 0.94518 0.98964 0.88749 1.20053 0.93146 0.95154 0.96555 1.21031 1.00130 0.92789 0.95971 1.20915 0.94608 1.01303 0.94183 1.20706 1.02137 0.95055 0.91898 1.43641 0.99353 1.00624 1.01363 1.94517 1.20607 1.74617 1.48583 1.94523 1.57824 1.10381 1.75098 1.20967 1.03002 0.94336 0.99584 1.18547 0.92536 0.86426 0.91700 1.86357 1.46813 1.33147 1.52766 1.23203 0.88316 1.01704 0.94269 0.96909 0.92671 0.93734 0.97121 0.89588 0.92886 0.85269 0.89838 0.94510 0.82905 0.83037 0.82801 0.87466 0.92671 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.52 37.16 0.35 -2.21 16 2 C -0.10 -2.33 5.59 -26.73 -0.15 -2.48 16 3 C 0.22 5.04 2.30 -68.86 -0.16 4.89 16 4 H 0.00 0.05 7.71 -51.93 -0.40 -0.35 16 5 C -0.51 -13.11 7.26 -34.44 -0.25 -13.36 16 6 H 0.06 1.49 7.60 -52.48 -0.40 1.10 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.20 11.32 55.43 0.63 -23.57 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.67 -12.88 5.64 -109.22 -0.62 -13.49 16 14 C 0.10 1.55 5.33 -4.97 -0.03 1.52 16 15 C -0.05 -0.64 5.36 -104.47 -0.56 -1.19 16 16 C -0.08 -0.89 9.67 -39.60 -0.38 -1.27 16 17 C -0.09 -1.01 9.55 -39.56 -0.38 -1.39 16 18 C -0.01 -0.19 6.85 -79.98 -0.55 -0.73 16 19 N 0.03 0.45 4.45 33.95 0.15 0.60 16 20 O -0.17 -2.44 18.45 -29.46 -0.54 -2.98 16 21 O -0.16 -2.33 18.45 -29.46 -0.54 -2.87 16 22 C -0.16 -1.92 8.54 -39.44 -0.34 -2.26 16 23 C 0.16 2.05 6.66 -39.22 -0.26 1.79 16 24 O -0.28 -3.76 9.73 -19.42 -0.19 -3.95 16 25 C 0.02 0.19 9.81 101.05 0.99 1.18 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 1.29 7.07 -51.93 -0.37 0.93 16 28 H 0.04 0.92 7.74 -51.93 -0.40 0.52 16 29 H 0.01 0.22 7.61 -51.93 -0.39 -0.17 16 30 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.33 6.26 8.13 -39.29 -0.32 5.94 16 33 H 0.08 1.40 7.32 -51.93 -0.38 1.02 16 34 H 0.04 0.57 7.80 -51.93 -0.41 0.16 16 35 H 0.15 1.39 8.03 -52.49 -0.42 0.97 16 36 H 0.15 1.42 7.61 -52.48 -0.40 1.02 16 37 H 0.15 1.63 5.85 -52.49 -0.31 1.32 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 40 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -28.36 339.11 -8.11 -36.47 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.29 Total: 3.14 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.80 Total: -13.93 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.16 Total: -36.46 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -1.28 Total: -9.80 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.36 -8.11 -36.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579608188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.840 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds