Wall clock time and date at job start Tue Mar 31 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 H 1.08995 * 109.46789 * 179.90733 * 3 2 1 5 5 C 1.50699 * 109.47261 * 299.90462 * 3 2 1 6 6 H 1.08003 * 120.00027 * 119.99939 * 5 3 2 7 7 C 1.37882 * 119.99970 * 300.00601 * 5 3 2 8 8 N 1.31512 * 120.00277 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99895 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47432 * 89.99468 * 9 7 5 11 11 H 1.48499 * 109.47023 * 209.99453 * 9 7 5 12 12 H 1.48498 * 109.47368 * 329.99542 * 9 7 5 13 13 N 1.46901 * 109.47289 * 59.90563 * 3 2 1 14 14 C 1.46899 * 110.99520 * 85.97041 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.52859 * 14 13 3 16 16 C 1.38172 * 120.02809 * 259.72649 * 15 14 13 17 17 C 1.38246 * 120.04937 * 179.72379 * 16 15 14 18 18 C 1.38287 * 120.11452 * 0.55391 * 17 16 15 19 19 N 1.48005 * 119.96861 * 179.70418 * 18 17 16 20 20 O 1.21803 * 119.99619 * 180.02562 * 19 18 17 21 21 O 1.21800 * 120.00545 * 0.02562 * 19 18 17 22 22 C 1.38111 * 120.05521 * 359.72383 * 18 17 16 23 23 C 1.38710 * 120.02729 * 80.00360 * 15 14 13 24 24 O 1.35899 * 120.05713 * 359.97438 * 23 15 14 25 25 C 1.42894 * 117.00302 * 179.97438 * 24 23 15 26 26 H 1.08997 * 109.47427 * 175.59648 * 1 2 3 27 27 H 1.08997 * 109.47138 * 55.59632 * 1 2 3 28 28 H 1.09001 * 109.46996 * 295.59645 * 1 2 3 29 29 H 1.08994 * 109.47157 * 120.00249 * 2 1 3 30 30 H 1.09004 * 109.46781 * 240.00384 * 2 1 3 31 31 H 0.96998 * 120.00292 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99908 * 209.92708 * 13 3 2 33 33 H 1.08995 * 109.47219 * 295.52690 * 14 13 3 34 34 H 1.08999 * 109.47280 * 55.53367 * 14 13 3 35 35 H 1.07992 * 119.97298 * 0.02562 * 16 15 14 36 36 H 1.08006 * 119.93723 * 180.25248 * 17 16 15 37 37 H 1.08002 * 120.02604 * 180.02562 * 22 18 17 38 38 H 1.09004 * 109.47419 * 180.02562 * 25 24 23 39 39 H 1.08997 * 109.47112 * 300.00050 * 25 24 23 40 40 H 1.09005 * 109.47089 * 59.99987 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0017 5 6 1.5396 2.1523 -1.2316 6 1 0.9185 3.0304 -1.1340 7 6 1.8746 1.6804 -2.4832 8 7 2.6312 0.6114 -2.6021 9 14 1.2537 2.5598 -4.0098 10 1 2.2320 3.6016 -4.4133 11 1 1.0907 1.5799 -5.1136 12 1 -0.0551 3.1970 -3.7162 13 7 1.5485 2.1357 1.1983 14 6 2.4429 1.9092 2.3414 15 6 1.9684 2.7214 3.5189 16 6 2.5862 3.9183 3.8272 17 6 2.1477 4.6665 4.9038 18 6 1.0976 4.2139 5.6815 19 7 0.6350 5.0143 6.8373 20 8 -0.2896 4.6160 7.5229 21 8 1.1787 6.0714 7.1029 22 6 0.4805 3.0154 5.3809 23 6 0.9149 2.2653 4.2974 24 8 0.3090 1.0860 3.9993 25 6 -0.7686 0.6783 4.8445 26 1 -0.3634 -1.0246 -0.0789 27 1 -0.3633 0.5806 -0.8479 28 1 -0.3633 0.4440 0.9268 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.8671 0.2797 -3.4825 32 1 1.4293 3.1221 1.0221 33 1 2.4366 0.8513 2.6036 34 1 3.4558 2.2119 2.0758 35 1 3.4091 4.2718 3.2238 36 1 2.6292 5.6037 5.1408 37 1 -0.3398 2.6626 5.9883 38 1 -1.1617 -0.2771 4.4970 39 1 -0.4077 0.5717 5.8675 40 1 -1.5582 1.4292 4.8143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579608188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:47 Heat of formation + Delta-G solvation = -33.383788 kcal Electronic energy + Delta-G solvation = -23700.728887 eV Core-core repulsion = 20097.554813 eV Total energy + Delta-G solvation = -3603.174074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.31986 -41.47746 -38.78990 -38.01329 -37.71564 -35.11282 -33.40045 -31.94395 -31.51079 -29.05757 -28.50715 -27.38745 -25.34008 -24.80283 -23.63895 -22.66906 -20.92469 -20.71009 -19.85481 -18.67533 -18.55182 -17.92422 -17.40666 -17.04458 -16.78855 -16.59807 -15.75721 -15.40572 -15.18759 -15.04672 -14.70450 -14.05880 -14.00247 -13.81231 -13.48532 -13.05099 -12.92245 -12.81685 -12.75633 -12.62128 -12.51853 -12.39481 -12.33819 -12.27869 -12.14094 -11.87171 -11.58288 -11.28049 -10.79979 -10.53359 -10.48002 -9.57389 -8.97534 -8.08232 -6.19705 -1.30800 -0.01932 0.26014 0.29011 1.42129 1.45227 1.53552 2.16174 2.23017 2.44124 3.21268 3.34724 3.38580 3.58605 3.62087 3.96094 4.04759 4.19484 4.34504 4.34943 4.44628 4.61953 4.65683 4.72595 4.75104 4.83268 4.85323 4.99123 5.07633 5.12407 5.34320 5.35708 5.44364 5.58737 5.73930 5.84547 5.91990 6.18429 6.31296 6.46554 6.48802 6.79894 7.03982 7.49036 8.96536 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.003701 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.168053 B = 7564.251849 C = 8206.527062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C 0.224 3.776 4 H -0.028 1.028 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.669 5.669 14 C 0.104 3.896 15 C -0.062 4.062 16 C -0.068 4.068 17 C -0.084 4.084 18 C -0.023 4.023 19 N 0.032 4.968 20 O -0.182 6.182 21 O -0.167 6.167 22 C -0.156 4.156 23 C 0.151 3.849 24 O -0.305 6.305 25 C 0.012 3.988 26 H 0.028 0.972 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.260 0.740 32 H 0.332 0.668 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.119 0.881 39 H 0.071 0.929 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 3.185 15.241 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C 0.116 3.884 4 H -0.011 1.011 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.300 5.300 14 C -0.024 4.024 15 C -0.063 4.063 16 C -0.087 4.087 17 C -0.103 4.103 18 C -0.106 4.106 19 N 0.548 4.452 20 O -0.395 6.395 21 O -0.383 6.383 22 C -0.176 4.176 23 C 0.103 3.897 24 O -0.217 6.217 25 C -0.083 4.083 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.193 0.807 36 H 0.190 0.810 37 H 0.185 0.815 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.446 1.998 14.576 14.915 hybrid contribution 0.241 0.957 -0.698 1.209 sum -2.205 2.955 13.878 14.360 Atomic orbital electron populations 1.21279 0.96146 0.98051 1.00755 1.21285 0.96144 0.97757 0.98338 1.18931 0.91077 0.92006 0.86377 1.01083 1.21430 1.31323 1.11917 0.91283 0.92519 1.25556 0.95291 0.95585 1.01530 1.70005 1.37692 1.23855 1.23922 0.85680 0.78835 0.78293 0.79547 1.20326 1.21340 1.19482 1.60658 1.48728 1.15633 1.04993 1.20772 0.94240 0.98981 0.88456 1.19913 0.94240 0.95977 0.96171 1.21231 1.00040 0.91617 0.95774 1.21149 0.93871 1.01835 0.93423 1.20898 1.02784 0.95225 0.91694 1.43822 0.99184 1.00624 1.01578 1.94513 1.21042 1.74746 1.49152 1.94513 1.57799 1.10692 1.75317 1.21035 1.03197 0.94004 0.99315 1.18599 0.92554 0.86613 0.91904 1.86318 1.47922 1.33281 1.54140 1.23465 0.87594 1.02411 0.94785 0.95267 0.94843 0.92816 0.96172 0.92585 0.93067 0.85085 0.90959 0.94026 0.80672 0.81005 0.81534 0.86287 0.90997 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.46 9.52 71.98 0.69 -3.78 16 2 C -0.10 -4.48 5.59 30.60 0.17 -4.31 16 3 C 0.22 10.49 2.30 44.17 0.10 10.59 16 4 H -0.03 -1.47 7.71 -2.39 -0.02 -1.49 16 5 C -0.52 -26.61 7.26 25.60 0.19 -26.43 16 6 H 0.06 2.86 7.60 -2.91 -0.02 2.84 16 7 C 0.02 1.04 5.30 84.66 0.45 1.49 16 8 N -0.92 -50.61 11.32 21.45 0.24 -50.36 16 9 Si 0.95 41.96 29.54 68.60 2.03 43.99 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 N -0.67 -25.26 5.64 -499.47 -2.82 -28.08 16 14 C 0.10 3.23 5.33 85.56 0.46 3.69 16 15 C -0.06 -1.55 5.36 -19.77 -0.11 -1.65 16 16 C -0.07 -1.34 9.67 22.26 0.22 -1.13 16 17 C -0.08 -1.64 9.55 22.28 0.21 -1.43 16 18 C -0.02 -0.53 6.85 36.36 0.25 -0.28 16 19 N 0.03 0.84 4.45 -46.52 -0.21 0.63 16 20 O -0.18 -5.02 18.45 18.88 0.35 -4.67 16 21 O -0.17 -4.50 18.45 18.89 0.35 -4.15 16 22 C -0.16 -3.48 8.54 22.36 0.19 -3.29 16 23 C 0.15 3.74 6.66 22.51 0.15 3.89 16 24 O -0.30 -7.80 9.73 -92.41 -0.90 -8.70 16 25 C 0.01 0.19 9.81 113.37 1.11 1.31 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.03 1.54 7.07 -2.39 -0.02 1.52 16 28 H 0.05 2.16 7.74 -2.39 -0.02 2.14 16 29 H 0.02 0.86 7.61 -2.39 -0.02 0.84 16 30 H 0.06 2.96 6.07 -2.38 -0.01 2.94 16 31 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 32 H 0.33 12.30 8.13 -89.69 -0.73 11.57 16 33 H 0.07 2.40 7.32 -2.39 -0.02 2.39 16 34 H 0.04 1.25 7.80 -2.39 -0.02 1.23 16 35 H 0.18 2.65 8.03 -2.91 -0.02 2.63 16 36 H 0.17 2.67 7.61 -2.91 -0.02 2.65 16 37 H 0.17 3.20 5.85 -2.91 -0.02 3.18 16 38 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 40 H 0.07 0.99 7.66 -2.38 -0.02 0.97 16 Total: -1.00 -60.22 339.11 3.45 -56.77 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.34 Total: 15.89 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.07 Total: -21.32 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -2.78 Total: -77.81 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.20 Total: -17.52 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -60.22 3.45 -56.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579608188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.382 kcal (2) G-P(sol) polarization free energy of solvation -60.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds