Wall clock time and date at job start Tue Mar 31 2020 06:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47542 * 2 1 4 4 H 1.09004 * 109.46589 * 305.64567 * 3 2 1 5 5 C 1.50696 * 109.47322 * 185.64163 * 3 2 1 6 6 H 1.07996 * 119.99785 * 239.99796 * 5 3 2 7 7 C 1.37878 * 120.00097 * 60.00113 * 5 3 2 8 8 N 1.31515 * 119.99582 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00178 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47039 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46726 * 120.00079 * 9 7 5 12 12 H 1.48493 * 109.47293 * 239.99570 * 9 7 5 13 13 N 1.46902 * 109.46939 * 65.64019 * 3 2 1 14 14 C 1.46899 * 111.00167 * 205.22227 * 13 3 2 15 15 C 1.52996 * 109.47423 * 185.20461 * 14 13 3 16 16 O 1.42895 * 109.47229 * 64.99654 * 15 14 13 17 17 C 1.35900 * 116.99676 * 180.02562 * 16 15 14 18 18 C 1.38727 * 120.05863 * 359.72697 * 17 16 15 19 19 C 1.38148 * 119.94179 * 179.77184 * 18 17 16 20 20 C 1.38265 * 120.05710 * 0.50577 * 19 18 17 21 21 N 1.48007 * 119.94240 * 179.72671 * 20 19 18 22 22 O 1.21802 * 119.99927 * 180.02562 * 21 20 19 23 23 O 1.21801 * 120.00298 * 0.02562 * 21 20 19 24 24 C 1.38260 * 120.10986 * 359.74335 * 20 19 18 25 25 C 1.38141 * 120.06001 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.46988 * 294.41433 * 1 2 3 27 27 H 1.08994 * 109.47198 * 54.41476 * 1 2 3 28 28 H 1.09001 * 109.47349 * 174.41630 * 1 2 3 29 29 H 1.09002 * 109.47419 * 239.99612 * 2 1 3 30 30 H 1.09008 * 109.46770 * 119.99877 * 2 1 3 31 31 H 0.97007 * 120.00035 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00183 * 329.17939 * 13 3 2 33 33 H 1.09005 * 109.46941 * 305.20805 * 14 13 3 34 34 H 1.09000 * 109.47115 * 65.19739 * 14 13 3 35 35 H 1.09003 * 109.47307 * 185.00297 * 15 14 13 36 36 H 1.09007 * 109.46804 * 304.99690 * 15 14 13 37 37 H 1.07994 * 120.02803 * 0.02562 * 18 17 16 38 38 H 1.08008 * 119.96856 * 180.22892 * 19 18 17 39 39 H 1.08003 * 119.97105 * 180.02562 * 24 20 19 40 40 H 1.07997 * 120.03068 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1397 6 1 4.1540 1.8864 0.6317 7 6 4.1302 0.8829 -1.2522 8 7 3.3831 0.3447 -2.1912 9 14 5.9901 0.8863 -1.4257 10 1 6.5964 1.5468 -0.2420 11 1 6.4812 -0.5121 -1.5173 12 1 6.3712 1.6263 -2.6555 13 7 1.6647 2.0945 1.2617 14 6 1.5791 3.5516 1.0962 15 6 1.3148 4.2046 2.4543 16 8 2.4355 3.9870 3.3136 17 6 2.3614 4.5060 4.5675 18 6 1.2357 5.2150 4.9606 19 6 1.1610 5.7375 6.2373 20 6 2.2113 5.5632 7.1195 21 7 2.1310 6.1293 8.4847 22 8 3.0559 5.9768 9.2625 23 8 1.1402 6.7476 8.8304 24 6 3.3365 4.8614 6.7283 25 6 3.4142 4.3329 5.4544 26 1 -0.3633 0.4248 0.9358 27 1 -0.3633 0.5980 -0.8357 28 1 -0.3634 -1.0228 -0.1000 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 3.7979 -0.0502 -2.9742 32 1 0.7987 1.7197 1.6189 33 1 2.5181 3.9269 0.6891 34 1 0.7650 3.7924 0.4125 35 1 1.1630 5.2756 2.3192 36 1 0.4232 3.7649 2.9015 37 1 0.4168 5.3549 4.2706 38 1 0.2832 6.2864 6.5451 39 1 4.1554 4.7263 7.4194 40 1 4.2935 3.7851 5.1492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582071444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:23 Heat of formation + Delta-G solvation = -37.293058 kcal Electronic energy + Delta-G solvation = -22779.912604 eV Core-core repulsion = 19176.569011 eV Total energy + Delta-G solvation = -3603.343593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.19679 -41.37101 -38.96811 -37.94206 -37.63102 -34.68431 -33.31617 -32.50709 -32.02628 -29.91757 -28.02814 -27.02902 -25.02137 -24.30039 -23.39865 -22.42210 -21.45238 -20.35699 -19.70152 -19.42243 -18.56409 -18.34458 -17.25788 -17.15779 -16.59679 -16.09557 -15.96109 -15.61906 -14.95324 -14.86125 -14.70148 -14.31546 -14.20915 -13.95964 -13.66055 -13.22507 -13.15561 -12.86448 -12.72200 -12.63062 -12.49235 -12.28013 -12.27348 -12.19011 -11.96832 -11.91756 -11.54023 -11.34248 -11.01899 -10.49154 -10.43030 -9.75518 -8.98110 -8.06965 -6.18064 -1.15158 -0.06958 0.35228 0.44589 1.39120 1.42592 1.53371 2.01370 2.27179 2.43837 3.18471 3.34891 3.48998 3.57788 3.64056 3.87192 4.04636 4.17261 4.25595 4.36272 4.50365 4.53938 4.58220 4.65458 4.70183 4.72105 4.75087 4.93346 5.02160 5.10947 5.11702 5.24706 5.37512 5.39793 5.59559 5.75472 5.90548 6.19648 6.36474 6.51401 6.54103 6.96119 7.02117 7.51197 8.95978 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.002938 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.286808 B = 9527.831865 C =10354.979332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.226 3.774 4 H -0.026 1.026 5 C -0.507 4.507 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.686 5.686 14 C 0.062 3.938 15 C 0.063 3.937 16 O -0.299 6.299 17 C 0.187 3.813 18 C -0.206 4.206 19 C -0.006 4.006 20 C -0.111 4.111 21 N 0.041 4.959 22 O -0.195 6.195 23 O -0.184 6.184 24 C -0.011 4.011 25 C -0.160 4.160 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.259 0.741 32 H 0.329 0.671 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 9.541 12.483 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.118 3.882 4 H -0.009 1.009 5 C -0.546 4.546 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.318 5.318 14 C -0.068 4.068 15 C -0.011 4.011 16 O -0.210 6.210 17 C 0.138 3.862 18 C -0.225 4.225 19 C -0.025 4.025 20 C -0.195 4.195 21 N 0.552 4.448 22 O -0.405 6.405 23 O -0.397 6.397 24 C -0.030 4.030 25 C -0.180 4.180 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.196 0.804 38 H 0.189 0.811 39 H 0.186 0.814 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.946 9.093 11.811 16.047 hybrid contribution 0.191 0.053 -0.606 0.637 sum -5.755 9.146 11.205 15.567 Atomic orbital electron populations 1.21743 0.96045 1.01109 1.00684 1.21600 0.94402 0.99094 1.01046 1.18906 0.93869 0.90676 0.84792 1.00885 1.21509 0.93065 1.36186 1.03842 0.93358 1.25637 1.01932 0.95501 0.95768 1.69997 1.36006 1.40132 1.09915 0.85612 0.81283 0.77601 0.77752 1.19617 1.20829 1.20798 1.60517 1.37038 1.03185 1.31079 1.21927 1.01242 0.89378 0.94266 1.23245 0.87328 1.01563 0.88961 1.86375 1.43734 1.70617 1.20299 1.19770 0.93487 0.87926 0.84987 1.21544 1.00050 1.03428 0.97460 1.21030 0.96720 0.93725 0.91023 1.21127 1.02298 1.12706 0.83415 1.43805 0.99375 0.98150 1.03455 1.94517 1.31117 1.64601 1.50239 1.94495 1.22565 1.40355 1.82308 1.20924 0.95782 0.90379 0.95885 1.20633 1.00503 1.05195 0.91633 0.92026 0.94252 0.92755 0.91630 0.94739 0.93153 0.85203 0.92355 0.92466 0.88258 0.89401 0.80410 0.81109 0.81430 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.65 71.98 0.69 -4.04 16 2 C -0.12 -5.48 5.36 30.59 0.16 -5.32 16 3 C 0.23 10.58 2.02 44.17 0.09 10.66 16 4 H -0.03 -1.36 7.85 -2.38 -0.02 -1.38 16 5 C -0.51 -27.25 8.55 25.60 0.22 -27.03 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C 0.01 0.52 5.29 84.65 0.45 0.97 16 8 N -0.92 -51.58 11.29 21.45 0.24 -51.34 16 9 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.69 -25.48 6.22 -495.45 -3.08 -28.56 16 14 C 0.06 1.86 5.84 86.30 0.50 2.36 16 15 C 0.06 1.29 5.06 71.98 0.36 1.66 16 16 O -0.30 -7.62 10.08 -92.43 -0.93 -8.56 16 17 C 0.19 3.80 6.69 22.51 0.15 3.95 16 18 C -0.21 -3.10 9.04 22.37 0.20 -2.89 16 19 C -0.01 -0.10 9.55 22.25 0.21 0.12 16 20 C -0.11 -2.28 6.85 36.39 0.25 -2.03 16 21 N 0.04 1.02 4.45 -46.44 -0.21 0.81 16 22 O -0.19 -5.28 18.44 18.88 0.35 -4.93 16 23 O -0.18 -4.80 18.44 18.88 0.35 -4.45 16 24 C -0.01 -0.20 9.55 22.25 0.21 0.01 16 25 C -0.16 -3.14 9.99 22.37 0.22 -2.92 16 26 H 0.06 1.76 6.65 -2.39 -0.02 1.75 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 3.40 5.94 -2.39 -0.01 3.39 16 30 H 0.03 1.54 8.14 -2.38 -0.02 1.53 16 31 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 32 H 0.33 10.55 6.65 -89.70 -0.60 9.96 16 33 H 0.06 2.12 7.92 -2.38 -0.02 2.10 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.38 7.65 -2.39 -0.02 1.36 16 36 H 0.09 1.38 7.67 -2.38 -0.02 1.36 16 37 H 0.18 1.63 6.30 -2.91 -0.02 1.61 16 38 H 0.17 2.10 7.61 -2.91 -0.02 2.08 16 39 H 0.17 2.65 7.61 -2.91 -0.02 2.63 16 40 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -64.79 341.81 2.94 -61.85 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.46 Total: 14.28 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 3.73 Total: -24.50 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -3.04 Total: -79.08 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.24 Total: -17.94 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.79 2.94 -61.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582071444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.559 kcal (2) G-P(sol) polarization free energy of solvation -64.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds