Wall clock time and date at job start Tue Mar 31 2020 06:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 H 1.09002 * 109.47388 * 185.55515 * 3 2 1 5 5 C 1.50700 * 109.47316 * 305.54840 * 3 2 1 6 6 H 1.07998 * 119.99826 * 116.63251 * 5 3 2 7 7 C 1.37885 * 120.00162 * 296.63954 * 5 3 2 8 8 N 1.31506 * 119.99649 * 352.48108 * 7 5 3 9 9 Si 1.86803 * 119.99983 * 172.48496 * 7 5 3 10 10 H 1.48494 * 109.46952 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.46846 * 299.99669 * 9 7 5 12 12 H 1.48498 * 109.46943 * 59.99580 * 9 7 5 13 13 N 1.46899 * 109.47128 * 65.55113 * 3 2 1 14 14 C 1.46895 * 110.99861 * 87.05334 * 13 3 2 15 15 C 1.53005 * 109.47157 * 184.39912 * 14 13 3 16 16 O 1.42900 * 109.47240 * 64.99239 * 15 14 13 17 17 C 1.35898 * 116.99864 * 180.02562 * 16 15 14 18 18 C 1.38726 * 120.05788 * 359.72621 * 17 16 15 19 19 C 1.38144 * 119.94311 * 179.76745 * 18 17 16 20 20 C 1.38268 * 120.05714 * 0.50966 * 19 18 17 21 21 N 1.48003 * 119.94438 * 179.72044 * 20 19 18 22 22 O 1.21803 * 119.99840 * 180.02562 * 21 20 19 23 23 O 1.21805 * 120.00153 * 0.02562 * 21 20 19 24 24 C 1.38268 * 120.10969 * 359.74440 * 20 19 18 25 25 C 1.38147 * 120.05639 * 359.97438 * 24 20 19 26 26 H 1.09000 * 109.47515 * 63.32970 * 1 2 3 27 27 H 1.09001 * 109.47549 * 183.33796 * 1 2 3 28 28 H 1.09002 * 109.47270 * 303.33189 * 1 2 3 29 29 H 1.08999 * 109.46892 * 240.00321 * 2 1 3 30 30 H 1.08998 * 109.47679 * 119.99705 * 2 1 3 31 31 H 0.97001 * 120.00561 * 355.70746 * 8 7 5 32 32 H 1.00899 * 110.99776 * 323.09317 * 13 3 2 33 33 H 1.09001 * 109.47196 * 304.39100 * 14 13 3 34 34 H 1.08998 * 109.47417 * 64.39636 * 14 13 3 35 35 H 1.08995 * 109.47200 * 184.99884 * 15 14 13 36 36 H 1.08998 * 109.46756 * 304.99616 * 15 14 13 37 37 H 1.08006 * 120.02900 * 0.02562 * 18 17 16 38 38 H 1.08002 * 119.97220 * 180.23136 * 19 18 17 39 39 H 1.07997 * 119.97077 * 180.02562 * 24 20 19 40 40 H 1.07990 * 120.02843 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1254 1.4442 -0.0995 5 6 1.4286 2.1915 -1.1560 6 1 0.7765 3.0322 -0.9704 7 6 1.7015 1.8034 -2.4506 8 7 2.6071 0.8785 -2.6826 9 14 0.7850 2.5914 -3.8749 10 1 1.2593 2.0046 -5.1539 11 1 -0.6711 2.3419 -3.7251 12 1 1.0389 4.0546 -3.8778 13 7 1.6627 2.0952 1.2608 14 6 2.6717 1.8541 2.3008 15 6 2.1932 2.4542 3.6245 16 8 1.0229 1.7628 4.0655 17 6 0.4663 2.1755 5.2345 18 6 1.0381 3.2205 5.9456 19 6 0.4676 3.6413 7.1313 20 6 -0.6662 3.0149 7.6149 21 7 -1.2718 3.4637 8.8886 22 8 -2.2704 2.9123 9.3157 23 8 -0.7716 4.3844 9.5097 24 6 -1.2350 1.9697 6.9107 25 6 -0.6717 1.5490 5.7215 26 1 -0.3634 0.4613 -0.9183 27 1 -0.3634 -1.0259 0.0598 28 1 -0.3634 0.5647 0.8586 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.1271 0.5139 -1.9494 32 1 0.7497 1.7926 1.5655 33 1 2.8202 0.7810 2.4211 34 1 3.6126 2.3208 2.0094 35 1 2.9784 2.3540 4.3737 36 1 1.9598 3.5092 3.4817 37 1 1.9262 3.7074 5.5704 38 1 0.9102 4.4572 7.6833 39 1 -2.1209 1.4824 7.2903 40 1 -1.1161 0.7323 5.1721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582071445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:26 Heat of formation + Delta-G solvation = -40.643336 kcal Electronic energy + Delta-G solvation = -22893.920023 eV Core-core repulsion = 19290.431151 eV Total energy + Delta-G solvation = -3603.488872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.22829 -41.48231 -39.18457 -38.29269 -37.66069 -34.94756 -33.04456 -32.52191 -32.04244 -29.91070 -27.45736 -26.99981 -25.47905 -24.69948 -23.54660 -22.59908 -21.46991 -20.40312 -19.73950 -19.46263 -18.79691 -18.59029 -17.40938 -17.19237 -16.40734 -15.99993 -15.82349 -15.49794 -15.45253 -14.92906 -14.90230 -14.46383 -14.38024 -14.02973 -13.67127 -13.47414 -13.12104 -12.80542 -12.68413 -12.60859 -12.31281 -12.30006 -12.27220 -12.17974 -12.00609 -11.89285 -11.85090 -11.67207 -10.65498 -10.53736 -10.37289 -9.85316 -9.08302 -8.49389 -6.19150 -1.20095 -0.12008 0.29895 0.40866 1.56343 1.62078 1.81088 1.85851 2.21520 2.60365 3.25751 3.29511 3.42965 3.46034 3.57063 3.79545 3.95329 4.13080 4.20232 4.28238 4.32391 4.36656 4.39285 4.53898 4.61052 4.69137 4.72431 4.74162 4.89669 4.95116 5.07027 5.11726 5.21633 5.33281 5.41098 5.53544 5.96628 6.03269 6.22103 6.50187 6.54478 6.73419 6.79617 7.55363 8.86420 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030548 B = 0.002640 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.368446 B =10603.913492 C =10685.859179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.143 4.143 3 C 0.207 3.793 4 H -0.004 1.004 5 C -0.575 4.575 6 H 0.044 0.956 7 C -0.026 4.026 8 N -0.940 5.940 9 Si 1.103 2.897 10 H -0.289 1.289 11 H -0.273 1.273 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.056 3.944 15 C 0.061 3.939 16 O -0.312 6.312 17 C 0.187 3.813 18 C -0.205 4.205 19 C -0.008 4.008 20 C -0.108 4.108 21 N 0.040 4.960 22 O -0.189 6.189 23 O -0.188 6.188 24 C -0.011 4.011 25 C -0.155 4.155 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.258 0.742 32 H 0.338 0.662 33 H 0.029 0.971 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.175 0.825 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.243 2.044 18.571 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.182 4.182 3 C 0.098 3.902 4 H 0.014 0.986 5 C -0.614 4.614 6 H 0.062 0.938 7 C -0.224 4.224 8 N -0.579 5.579 9 Si 0.927 3.073 10 H -0.215 1.215 11 H -0.198 1.198 12 H -0.201 1.201 13 N -0.315 5.315 14 C -0.074 4.074 15 C -0.013 4.013 16 O -0.224 6.224 17 C 0.139 3.861 18 C -0.224 4.224 19 C -0.027 4.027 20 C -0.192 4.192 21 N 0.551 4.449 22 O -0.400 6.400 23 O -0.400 6.400 24 C -0.030 4.030 25 C -0.174 4.174 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.192 0.808 38 H 0.187 0.813 39 H 0.189 0.811 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.926 2.267 16.032 16.454 hybrid contribution 0.255 -0.766 2.052 2.205 sum -2.671 1.500 18.084 18.342 Atomic orbital electron populations 1.21441 0.95157 0.99787 1.01288 1.22053 0.97543 0.99833 0.98820 1.19098 0.93472 0.89498 0.88159 0.98597 1.22088 1.30779 1.16270 0.92268 0.93750 1.26876 0.97077 0.96012 1.02484 1.70914 1.22534 1.28777 1.35631 0.83089 0.75504 0.75516 0.73173 1.21517 1.19844 1.20149 1.60746 1.05154 1.62469 1.03108 1.22103 0.96642 0.98755 0.89888 1.23233 0.85354 0.97120 0.95616 1.86147 1.43396 1.57868 1.34996 1.19646 0.91227 0.90832 0.84384 1.21545 1.04603 1.00025 0.96254 1.21019 0.90428 0.97016 0.94269 1.21167 1.02639 1.06352 0.89083 1.43816 0.99616 0.98947 1.02480 1.94515 1.15406 1.57618 1.72475 1.94511 1.64892 1.21589 1.59005 1.20985 0.98749 0.91450 0.91802 1.20665 0.96038 1.03998 0.96686 0.93914 0.93256 0.92829 0.94333 0.94295 0.93169 0.84297 0.95313 0.89240 0.87845 0.89578 0.80762 0.81339 0.81091 0.81417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 9.38 71.98 0.68 -3.98 16 2 C -0.14 -6.17 5.46 30.59 0.17 -6.01 16 3 C 0.21 9.58 1.97 44.17 0.09 9.67 16 4 H 0.00 -0.20 7.24 -2.39 -0.02 -0.21 16 5 C -0.58 -30.38 7.33 25.60 0.19 -30.20 16 6 H 0.04 2.40 7.83 -2.91 -0.02 2.37 16 7 C -0.03 -1.43 5.25 84.66 0.44 -0.99 16 8 N -0.94 -54.71 12.90 21.45 0.28 -54.44 16 9 Si 1.10 48.90 29.91 68.60 2.05 50.95 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 12 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 13 N -0.68 -25.53 6.27 -495.45 -3.11 -28.64 16 14 C 0.06 1.57 5.90 86.31 0.51 2.08 16 15 C 0.06 1.17 5.07 71.98 0.36 1.53 16 16 O -0.31 -6.55 9.59 -92.40 -0.89 -7.44 16 17 C 0.19 3.24 6.69 22.51 0.15 3.39 16 18 C -0.21 -2.87 9.04 22.36 0.20 -2.67 16 19 C -0.01 -0.13 9.55 22.25 0.21 0.09 16 20 C -0.11 -2.05 6.85 36.39 0.25 -1.80 16 21 N 0.04 0.94 4.45 -46.44 -0.21 0.74 16 22 O -0.19 -4.82 18.44 18.88 0.35 -4.47 16 23 O -0.19 -4.79 18.44 18.88 0.35 -4.44 16 24 C -0.01 -0.17 9.55 22.26 0.21 0.04 16 25 C -0.15 -2.42 9.99 22.37 0.22 -2.20 16 26 H 0.04 1.88 7.20 -2.39 -0.02 1.86 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.88 6.34 -2.39 -0.02 1.87 16 29 H 0.04 1.89 6.26 -2.39 -0.01 1.88 16 30 H 0.04 1.50 7.45 -2.39 -0.02 1.49 16 31 H 0.26 15.07 6.02 -92.71 -0.56 14.51 16 32 H 0.34 12.17 5.98 -89.69 -0.54 11.63 16 33 H 0.03 0.84 7.43 -2.39 -0.02 0.82 16 34 H 0.09 2.51 8.13 -2.39 -0.02 2.49 16 35 H 0.10 1.29 7.65 -2.39 -0.02 1.27 16 36 H 0.09 1.56 7.67 -2.39 -0.02 1.54 16 37 H 0.18 1.62 6.30 -2.91 -0.02 1.60 16 38 H 0.17 2.04 7.61 -2.91 -0.02 2.02 16 39 H 0.17 2.19 7.60 -2.91 -0.02 2.17 16 40 H 0.17 2.16 8.06 -2.92 -0.02 2.14 16 Total: -1.00 -64.70 336.24 3.25 -61.45 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.74 Total: 17.34 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 3.69 Total: -31.05 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -3.04 Total: -82.34 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.19 Total: -16.35 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.05 Total: 50.95 kcal Total: -64.70 3.25 -61.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582071445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.804 kcal (2) G-P(sol) polarization free energy of solvation -64.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds