Wall clock time and date at job start Tue Mar 31 2020 06:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.08996 * 109.47255 * 54.66571 * 3 2 1 5 5 O 1.42906 * 109.47012 * 294.66516 * 3 2 1 6 6 C 1.42898 * 113.99691 * 151.51650 * 5 3 2 7 7 C 1.53001 * 109.46899 * 175.33909 * 6 5 3 8 8 S 1.81398 * 109.47454 * 180.02562 * 7 6 5 9 9 C 1.81396 * 103.00175 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47012 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.47356 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99301 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99988 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00634 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99648 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47334 * 59.99822 * 15 13 11 17 17 H 1.48498 * 109.47271 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47165 * 300.00117 * 15 13 11 19 19 C 1.50698 * 109.47053 * 174.66965 * 3 2 1 20 20 C 1.38234 * 120.00393 * 84.72400 * 19 3 2 21 21 C 1.38232 * 120.00164 * 179.78425 * 20 19 3 22 22 C 1.38236 * 119.99928 * 0.44553 * 21 20 19 23 23 C 1.38230 * 119.99986 * 359.80727 * 22 21 20 24 24 C 1.38234 * 120.00330 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47399 * 55.78849 * 1 2 3 26 26 H 1.09006 * 109.47013 * 175.78281 * 1 2 3 27 27 H 1.09001 * 109.47754 * 295.78600 * 1 2 3 28 28 H 1.09000 * 109.47281 * 239.99546 * 2 1 3 29 29 H 1.09006 * 109.46847 * 119.99755 * 2 1 3 30 30 H 1.09002 * 109.46864 * 55.34200 * 6 5 3 31 31 H 1.08992 * 109.47531 * 295.33449 * 6 5 3 32 32 H 1.09007 * 109.46982 * 300.00344 * 7 6 5 33 33 H 1.09000 * 109.47222 * 59.99677 * 7 6 5 34 34 H 1.09002 * 109.46847 * 299.99407 * 9 8 7 35 35 H 1.08995 * 109.47267 * 59.99625 * 9 8 7 36 36 H 1.09007 * 109.47127 * 299.99596 * 10 9 8 37 37 H 1.08995 * 109.47523 * 59.99644 * 10 9 8 38 38 H 0.96996 * 120.00592 * 179.97438 * 14 13 11 39 39 H 1.07999 * 119.99846 * 359.97438 * 20 19 3 40 40 H 1.08003 * 119.99988 * 180.27374 * 21 20 19 41 41 H 1.07996 * 119.99852 * 179.83130 * 22 21 20 42 42 H 1.08006 * 120.00262 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00649 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6007 1.9832 0.8383 5 8 1.6686 2.0790 -1.2244 6 6 1.4952 3.4932 -1.1150 7 6 1.2152 4.0813 -2.4994 8 16 0.9958 5.8766 -2.3607 9 6 0.6782 6.3824 -4.0735 10 6 0.4689 7.8971 -4.1275 11 6 0.2056 8.3175 -5.5506 12 1 0.1897 7.5782 -6.3378 13 6 -0.0149 9.6457 -5.8474 14 7 0.0050 10.5459 -4.8890 15 14 -0.3420 10.1666 -7.6113 16 1 -1.5595 9.4800 -8.1126 17 1 -0.5451 11.6367 -7.6637 18 1 0.8194 9.7973 -8.4599 19 6 3.5411 1.4446 0.1320 20 6 4.3340 1.2986 -0.9909 21 6 5.7110 1.3050 -0.8704 22 6 6.2952 1.4481 0.3743 23 6 5.5023 1.5888 1.4978 24 6 4.1253 1.5870 1.3768 25 1 -0.3634 0.5778 -0.8498 26 1 -0.3633 -1.0249 -0.0756 27 1 -0.3634 0.4470 0.9253 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.4020 3.9399 -0.7070 31 1 0.6558 3.7062 -0.4533 32 1 2.0547 3.8682 -3.1612 33 1 0.3085 3.6345 -2.9074 34 1 1.5307 6.1115 -4.6964 35 1 -0.2154 5.8784 -4.4415 36 1 -0.3835 8.1685 -3.5045 37 1 1.3627 8.4008 -3.7597 38 1 -0.1498 11.4804 -5.0979 39 1 3.8775 1.1826 -1.9628 40 1 6.3305 1.1953 -1.7483 41 1 7.3710 1.4503 0.4688 42 1 5.9587 1.7002 2.4704 43 1 3.5058 1.6965 2.2547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593197296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:52 Heat of formation + Delta-G solvation = -50.527791 kcal Electronic energy + Delta-G solvation = -20191.638708 eV Core-core repulsion = 17134.014428 eV Total energy + Delta-G solvation = -3057.624280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.93872 -37.95922 -34.28583 -33.68669 -31.32200 -31.13507 -30.87378 -30.72577 -26.18199 -25.32311 -23.29725 -22.64607 -22.41478 -20.97600 -20.88611 -17.46987 -17.00395 -16.51686 -16.01875 -15.50917 -15.24946 -14.86645 -14.69452 -14.50443 -14.16058 -14.11847 -13.64271 -13.57030 -13.07921 -12.96221 -12.69851 -12.33055 -12.11884 -11.95625 -11.72610 -11.41718 -11.38833 -11.28413 -11.12762 -10.99783 -10.87068 -10.61949 -10.19209 -9.75482 -9.66307 -9.53526 -9.11945 -9.08755 -8.95901 -8.42020 -7.17296 -6.06028 -4.10790 1.10174 1.20732 2.00639 3.20623 3.30662 3.35276 3.37840 3.54749 3.67368 4.38391 4.41888 4.64695 4.75029 4.80263 4.85162 4.92980 4.97876 5.05194 5.08132 5.25600 5.29453 5.34826 5.41028 5.43820 5.57853 5.68137 5.75243 5.78455 5.79298 5.82864 5.91798 5.99148 6.07896 6.18062 6.24010 6.31442 6.35001 6.71682 6.78798 7.07017 7.56022 7.64736 7.90029 8.27060 8.93931 9.53079 11.04805 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.002489 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.499932 B =11245.182379 C =11921.763162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.132 3.868 4 H 0.070 0.930 5 O -0.373 6.373 6 C 0.083 3.917 7 C -0.091 4.091 8 S -0.279 6.279 9 C -0.054 4.054 10 C 0.038 3.962 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.113 4.113 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.113 4.113 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 -22.555 13.012 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C 0.073 3.927 4 H 0.088 0.912 5 O -0.292 6.292 6 C 0.006 3.994 7 C -0.239 4.239 8 S -0.052 6.052 9 C -0.202 4.202 10 C -0.001 4.001 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.131 4.131 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.727 -21.855 13.794 26.974 hybrid contribution -0.073 -0.185 -1.801 1.812 sum 7.654 -22.040 11.993 26.233 Atomic orbital electron populations 1.21756 0.94964 1.01854 1.02403 1.21587 0.96594 0.93950 1.02883 1.20972 0.89413 0.94555 0.87738 0.91244 1.87897 1.89359 1.20014 1.31932 1.22147 1.00684 0.80608 0.96008 1.23123 1.05064 0.96075 0.99641 1.86823 1.94624 1.03634 1.20156 1.23698 1.02819 1.04405 0.89312 1.18907 0.98275 0.85241 0.97666 1.21056 1.49616 0.92893 0.92653 0.92475 1.25007 0.95184 0.96582 0.97459 1.69956 1.49122 1.01776 1.32083 0.86574 0.78858 0.77466 0.84614 1.20131 1.21156 1.20143 1.20460 0.96309 1.00862 0.93747 1.21029 0.93256 0.98015 0.98790 1.21209 0.95002 1.00265 0.97572 1.21180 0.99817 0.99994 0.92848 1.21104 0.93687 1.00638 0.98672 1.21006 0.95056 1.00318 0.96767 0.91626 0.92607 0.92907 0.90936 0.90714 0.92449 0.92378 0.89924 0.89827 0.91267 0.91242 0.95484 0.95495 0.92698 0.85493 0.86038 0.86199 0.86108 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.86 37.16 0.37 -0.85 16 2 C -0.11 -0.93 5.62 -26.73 -0.15 -1.08 16 3 C 0.13 1.29 2.31 -27.88 -0.06 1.22 16 4 H 0.07 0.63 7.75 -51.93 -0.40 0.23 16 5 O -0.37 -4.44 8.63 -35.23 -0.30 -4.74 16 6 C 0.08 1.06 5.72 37.16 0.21 1.28 16 7 C -0.09 -1.33 6.31 37.16 0.23 -1.09 16 8 S -0.28 -5.22 21.74 -107.50 -2.34 -7.56 16 9 C -0.05 -1.16 5.88 37.16 0.22 -0.94 16 10 C 0.04 0.99 4.98 -27.88 -0.14 0.85 16 11 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.11 -1.15 4.88 -104.62 -0.51 -1.66 16 20 C -0.09 -0.98 9.35 -39.59 -0.37 -1.35 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 23 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 24 C -0.11 -1.04 9.68 -39.58 -0.38 -1.42 16 25 H 0.06 0.61 7.73 -51.93 -0.40 0.21 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.76 8.08 -51.93 -0.42 0.35 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 33 H 0.08 1.19 8.14 -51.92 -0.42 0.76 16 34 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.13 1.35 7.64 -52.49 -0.40 0.95 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -30.24 372.85 -11.00 -41.25 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.51 Total: -2.06 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -2.19 Total: -22.95 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.30 Total: -4.74 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -5.22 SS G_CDS: -2.34 Total: -7.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.24 -11.00 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593197296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.279 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds