Wall clock time and date at job start Tue Mar 31 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.08996 * 109.47255 * 54.66571 * 3 2 1 5 5 O 1.42906 * 109.47012 * 294.66516 * 3 2 1 6 6 C 1.42898 * 113.99691 * 151.51650 * 5 3 2 7 7 C 1.53001 * 109.46899 * 175.33909 * 6 5 3 8 8 S 1.81398 * 109.47454 * 180.02562 * 7 6 5 9 9 C 1.81396 * 103.00175 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47012 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.47356 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99301 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99988 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00634 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99648 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47334 * 59.99822 * 15 13 11 17 17 H 1.48498 * 109.47271 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47165 * 300.00117 * 15 13 11 19 19 C 1.50698 * 109.47053 * 174.66965 * 3 2 1 20 20 C 1.38234 * 120.00393 * 84.72400 * 19 3 2 21 21 C 1.38232 * 120.00164 * 179.78425 * 20 19 3 22 22 C 1.38236 * 119.99928 * 0.44553 * 21 20 19 23 23 C 1.38230 * 119.99986 * 359.80727 * 22 21 20 24 24 C 1.38234 * 120.00330 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47399 * 55.78849 * 1 2 3 26 26 H 1.09006 * 109.47013 * 175.78281 * 1 2 3 27 27 H 1.09001 * 109.47754 * 295.78600 * 1 2 3 28 28 H 1.09000 * 109.47281 * 239.99546 * 2 1 3 29 29 H 1.09006 * 109.46847 * 119.99755 * 2 1 3 30 30 H 1.09002 * 109.46864 * 55.34200 * 6 5 3 31 31 H 1.08992 * 109.47531 * 295.33449 * 6 5 3 32 32 H 1.09007 * 109.46982 * 300.00344 * 7 6 5 33 33 H 1.09000 * 109.47222 * 59.99677 * 7 6 5 34 34 H 1.09002 * 109.46847 * 299.99407 * 9 8 7 35 35 H 1.08995 * 109.47267 * 59.99625 * 9 8 7 36 36 H 1.09007 * 109.47127 * 299.99596 * 10 9 8 37 37 H 1.08995 * 109.47523 * 59.99644 * 10 9 8 38 38 H 0.96996 * 120.00592 * 179.97438 * 14 13 11 39 39 H 1.07999 * 119.99846 * 359.97438 * 20 19 3 40 40 H 1.08003 * 119.99988 * 180.27374 * 21 20 19 41 41 H 1.07996 * 119.99852 * 179.83130 * 22 21 20 42 42 H 1.08006 * 120.00262 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00649 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6007 1.9832 0.8383 5 8 1.6686 2.0790 -1.2244 6 6 1.4952 3.4932 -1.1150 7 6 1.2152 4.0813 -2.4994 8 16 0.9958 5.8766 -2.3607 9 6 0.6782 6.3824 -4.0735 10 6 0.4689 7.8971 -4.1275 11 6 0.2056 8.3175 -5.5506 12 1 0.1897 7.5782 -6.3378 13 6 -0.0149 9.6457 -5.8474 14 7 0.0050 10.5459 -4.8890 15 14 -0.3420 10.1666 -7.6113 16 1 -1.5595 9.4800 -8.1126 17 1 -0.5451 11.6367 -7.6637 18 1 0.8194 9.7973 -8.4599 19 6 3.5411 1.4446 0.1320 20 6 4.3340 1.2986 -0.9909 21 6 5.7110 1.3050 -0.8704 22 6 6.2952 1.4481 0.3743 23 6 5.5023 1.5888 1.4978 24 6 4.1253 1.5870 1.3768 25 1 -0.3634 0.5778 -0.8498 26 1 -0.3633 -1.0249 -0.0756 27 1 -0.3634 0.4470 0.9253 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.4020 3.9399 -0.7070 31 1 0.6558 3.7062 -0.4533 32 1 2.0547 3.8682 -3.1612 33 1 0.3085 3.6345 -2.9074 34 1 1.5307 6.1115 -4.6964 35 1 -0.2154 5.8784 -4.4415 36 1 -0.3835 8.1685 -3.5045 37 1 1.3627 8.4008 -3.7597 38 1 -0.1498 11.4804 -5.0979 39 1 3.8775 1.1826 -1.9628 40 1 6.3305 1.1953 -1.7483 41 1 7.3710 1.4503 0.4688 42 1 5.9587 1.7002 2.4704 43 1 3.5058 1.6965 2.2547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593197296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:51 Heat of formation + Delta-G solvation = -64.036284 kcal Electronic energy + Delta-G solvation = -20192.224480 eV Core-core repulsion = 17134.014428 eV Total energy + Delta-G solvation = -3058.210052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68433 -38.77983 -35.79103 -35.07460 -32.92573 -32.10674 -31.87071 -31.63337 -27.40389 -26.87444 -24.47204 -23.45881 -23.12132 -22.73689 -21.67761 -18.68149 -18.26343 -17.84693 -16.92647 -16.85645 -16.51443 -16.15675 -15.81137 -15.52472 -15.45140 -15.03054 -14.75497 -14.59767 -14.24898 -13.98017 -13.78222 -13.54113 -13.42847 -13.18384 -12.90693 -12.80044 -12.58473 -12.45804 -12.17903 -12.10709 -11.94547 -11.87475 -11.70144 -11.60637 -11.30862 -10.88289 -10.65404 -10.60612 -9.81935 -9.66363 -8.70026 -8.23673 -6.37442 0.39267 0.50431 0.59322 1.41013 1.44343 1.52481 1.67611 2.40256 2.72852 2.87863 3.09605 3.66225 3.83018 3.86953 3.99166 4.13125 4.20420 4.22484 4.23605 4.29489 4.32948 4.36796 4.40780 4.58297 4.63761 4.66437 4.71413 4.77346 4.84595 4.92870 5.05857 5.11973 5.15697 5.19880 5.36860 5.43760 5.48224 5.55668 5.60441 5.63088 5.72747 6.09960 6.11146 6.19446 6.76512 7.32095 8.88036 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.002489 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.499932 B =11245.182379 C =11921.763162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C 0.129 3.871 4 H 0.078 0.922 5 O -0.379 6.379 6 C 0.092 3.908 7 C -0.075 4.075 8 S -0.299 6.299 9 C -0.046 4.046 10 C 0.045 3.955 11 C -0.544 4.544 12 H 0.067 0.933 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.972 3.028 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.265 1.265 19 C -0.125 4.125 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.121 4.121 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.078 0.922 36 H -0.002 1.002 37 H -0.003 1.003 38 H 0.266 0.734 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.050 -24.014 12.997 28.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C 0.071 3.929 4 H 0.096 0.904 5 O -0.299 6.299 6 C 0.014 3.986 7 C -0.223 4.223 8 S -0.072 6.072 9 C -0.194 4.194 10 C 0.006 3.994 11 C -0.584 4.584 12 H 0.086 0.914 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.795 3.205 16 H -0.189 1.189 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.125 4.125 20 C -0.130 4.130 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.075 0.925 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.050 -23.332 13.779 28.268 hybrid contribution -0.118 0.183 -1.692 1.706 sum 7.932 -23.149 12.087 27.293 Atomic orbital electron populations 1.21740 0.94672 1.02337 1.02034 1.21579 0.96751 0.92969 1.03249 1.21154 0.89510 0.95209 0.87024 0.90436 1.87880 1.89514 1.19107 1.33398 1.21943 1.00605 0.81330 0.94685 1.23097 1.05702 0.92381 1.01109 1.86819 1.94677 1.07768 1.17943 1.23346 1.03584 1.01033 0.91451 1.18676 0.95576 0.88620 0.96490 1.21517 1.49512 0.93592 0.93754 0.91449 1.26020 0.94674 0.96630 1.02339 1.70099 1.50088 1.02222 1.34677 0.85401 0.79281 0.77075 0.78695 1.18917 1.20793 1.18989 1.20558 0.96407 1.01403 0.94154 1.21092 0.93959 0.99253 0.98706 1.21437 0.94868 1.00305 0.98592 1.21494 1.01048 0.99393 0.92590 1.21447 0.93649 0.99765 0.99698 1.21273 0.95699 0.99974 0.96970 0.93228 0.91538 0.92195 0.91680 0.89198 0.93026 0.91826 0.89474 0.88940 0.90511 0.90329 0.98337 0.98450 0.92510 0.86381 0.84938 0.84216 0.83914 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.86 71.98 0.71 -1.47 16 2 C -0.11 -1.63 5.62 30.59 0.17 -1.46 16 3 C 0.13 2.36 2.31 29.85 0.07 2.43 16 4 H 0.08 1.29 7.75 -2.39 -0.02 1.27 16 5 O -0.38 -8.66 8.63 -148.98 -1.29 -9.94 16 6 C 0.09 2.26 5.72 71.98 0.41 2.67 16 7 C -0.07 -2.10 6.31 71.98 0.45 -1.65 16 8 S -0.30 -11.14 21.74 -56.49 -1.23 -12.37 16 9 C -0.05 -1.96 5.88 71.98 0.42 -1.54 16 10 C 0.04 2.42 4.98 29.85 0.15 2.57 16 11 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 12 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 13 C 0.00 0.11 5.46 84.65 0.46 0.57 16 14 N -0.93 -57.05 13.29 21.44 0.28 -56.77 16 15 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 19 C -0.12 -2.41 4.88 -19.86 -0.10 -2.51 16 20 C -0.11 -2.32 9.35 22.27 0.21 -2.11 16 21 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 22 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 23 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 24 C -0.12 -2.02 9.68 22.27 0.22 -1.80 16 25 H 0.05 0.88 7.73 -2.39 -0.02 0.86 16 26 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.05 1.33 8.08 -2.39 -0.02 1.31 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.12 2.55 7.64 -2.91 -0.02 2.53 16 40 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -65.34 372.85 4.82 -60.52 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.94 Total: 13.43 kcal Atomic # 6 Polarization: -44.86 SS G_CDS: 4.08 Total: -40.78 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.28 Total: -56.77 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -1.29 Total: -9.94 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -11.14 SS G_CDS: -1.23 Total: -12.37 kcal Total: -65.34 4.82 -60.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593197296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.517 kcal (2) G-P(sol) polarization free energy of solvation -65.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds