Wall clock time and date at job start Tue Mar 31 2020 07:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 C 1.50697 * 119.94043 * 180.27986 * 6 5 4 8 8 H 1.08998 * 109.47248 * 180.32368 * 7 6 5 9 9 C 1.52997 * 109.47464 * 300.32624 * 7 6 5 10 10 C 1.53004 * 109.47165 * 60.32604 * 7 6 5 11 11 S 1.81397 * 109.47273 * 174.99905 * 10 7 6 12 12 C 1.81399 * 102.99936 * 180.02562 * 11 10 7 13 13 C 1.53001 * 109.47097 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47168 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47582 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99476 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00568 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00217 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99674 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47117 * 90.00356 * 19 17 15 21 21 H 1.48500 * 109.46977 * 210.00406 * 19 17 15 22 22 H 1.48503 * 109.47246 * 330.00096 * 19 17 15 23 23 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 24 24 C 1.38146 * 120.05909 * 359.67357 * 23 6 5 25 25 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 26 26 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 28 28 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 30 30 H 1.09009 * 109.47314 * 60.00045 * 9 7 6 31 31 H 1.09000 * 109.47122 * 179.97438 * 9 7 6 32 32 H 1.08999 * 109.47351 * 300.00005 * 9 7 6 33 33 H 1.08996 * 109.46942 * 295.00098 * 10 7 6 34 34 H 1.09005 * 109.46989 * 55.00064 * 10 7 6 35 35 H 1.09002 * 109.46757 * 299.99803 * 12 11 10 36 36 H 1.08994 * 109.47363 * 59.99823 * 12 11 10 37 37 H 1.09002 * 109.46985 * 299.99454 * 13 12 11 38 38 H 1.08994 * 109.47331 * 59.99593 * 13 12 11 39 39 H 1.09003 * 109.47442 * 299.99344 * 14 13 12 40 40 H 1.09001 * 109.47622 * 59.99687 * 14 13 12 41 41 H 0.97000 * 120.00308 * 179.97438 * 18 17 15 42 42 H 1.08006 * 119.97147 * 179.69567 * 23 6 5 43 43 H 1.07993 * 120.03340 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 6 3.9862 5.0184 -0.0018 8 1 3.2356 5.8087 -0.0013 9 6 4.8612 5.1453 1.2468 10 6 4.8596 5.1453 -1.2516 11 16 5.5663 6.8142 -1.3285 12 6 6.5513 6.7705 -2.8512 13 6 7.2247 8.1280 -3.0621 14 6 8.0560 8.0909 -4.3460 15 6 8.7188 9.4283 -4.5542 16 1 8.5624 10.2251 -3.8422 17 6 9.5249 9.6346 -5.6536 18 7 10.1028 10.8018 -5.8355 19 14 9.7960 8.2561 -6.8847 20 1 8.7571 8.3267 -7.9436 21 1 11.1401 8.3989 -7.4997 22 1 9.7062 6.9468 -6.1897 23 6 1.9212 3.6047 -0.0004 24 6 1.2916 2.3751 0.0001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 4.0209 0.3797 -0.0005 29 1 5.1346 2.5748 0.0090 30 1 5.6120 4.3550 1.2463 31 1 5.3565 6.1163 1.2462 32 1 4.2391 5.0549 2.1372 33 1 5.6644 4.4116 -1.2085 34 1 4.2522 4.9668 -2.1390 35 1 7.3139 5.9960 -2.7684 36 1 5.9013 6.5513 -3.6982 37 1 6.4624 8.9028 -3.1447 38 1 7.8747 8.3467 -2.2150 39 1 8.8184 7.3163 -4.2631 40 1 7.4063 7.8720 -5.1934 41 1 10.6702 10.9468 -6.6088 42 1 1.3343 4.5114 -0.0003 43 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596381823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:31 Heat of formation + Delta-G solvation = -42.729323 kcal Electronic energy + Delta-G solvation = -19920.284343 eV Core-core repulsion = 16862.998230 eV Total energy + Delta-G solvation = -3057.286113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53747 -38.42478 -35.05888 -34.56284 -32.07360 -31.46724 -29.53043 -28.17478 -27.63187 -27.32497 -23.47905 -23.04849 -22.87869 -20.47958 -19.98047 -18.53589 -16.83517 -16.64460 -16.17617 -16.11786 -15.61197 -15.09409 -14.85575 -14.49877 -14.24538 -13.98533 -13.73892 -13.55283 -13.43983 -12.93158 -12.82355 -12.40872 -12.38695 -12.13733 -12.04756 -11.73351 -11.42756 -11.27483 -11.15586 -11.09760 -10.92185 -10.84745 -10.01010 -9.82403 -9.70144 -9.52374 -9.31390 -9.21083 -8.54682 -8.40104 -7.44917 -6.04616 -4.02989 1.02402 1.07676 1.86414 2.84075 2.89782 3.29922 3.37371 3.40341 3.42907 4.37334 4.44283 4.50255 4.58040 4.63404 4.71701 4.75967 4.84023 5.02160 5.05374 5.10622 5.20537 5.28523 5.38551 5.41316 5.44737 5.51636 5.53512 5.70671 5.75280 5.89561 5.94512 6.00893 6.03477 6.15294 6.38399 6.42218 6.43416 6.51741 6.82689 7.02909 7.25646 7.37807 7.76994 8.53147 9.00400 9.57234 11.08783 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028062 B = 0.002267 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.549533 B =12349.644787 C =12933.180778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.149 4.149 5 C -0.073 4.073 6 C -0.107 4.107 7 C -0.029 4.029 8 H 0.086 0.914 9 C -0.146 4.146 10 C -0.081 4.081 11 S -0.271 6.271 12 C -0.078 4.078 13 C -0.087 4.087 14 C -0.008 4.008 15 C -0.520 4.520 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.074 4.074 24 C -0.206 4.206 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.017 0.983 40 H 0.012 0.988 41 H 0.263 0.737 42 H 0.126 0.874 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.544 -21.431 14.226 32.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.168 4.168 5 C -0.091 4.091 6 C -0.109 4.109 7 C -0.049 4.049 8 H 0.104 0.896 9 C -0.203 4.203 10 C -0.230 4.230 11 S -0.042 6.042 12 C -0.226 4.226 13 C -0.126 4.126 14 C -0.047 4.047 15 C -0.559 4.559 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.092 4.092 24 C -0.225 4.225 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.144 0.856 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.483 -20.687 14.820 32.049 hybrid contribution 0.073 -1.558 -1.704 2.310 sum -19.410 -22.245 13.116 32.305 Atomic orbital electron populations 1.23052 0.78396 1.03928 1.01388 1.86063 1.21391 1.27065 1.88805 1.19053 0.92406 0.84120 0.96886 1.20430 0.91358 0.98675 1.06334 1.20855 1.00029 0.90903 0.97308 1.19751 0.93380 0.94778 1.03019 1.19825 0.97013 0.93948 0.94071 0.89591 1.21920 0.99266 1.03156 0.96001 1.23458 1.01437 0.97080 1.00986 1.86823 1.63109 1.18203 1.36091 1.23627 1.00043 1.03977 0.94975 1.21268 0.98825 0.92058 1.00426 1.19576 0.94769 0.98111 0.92255 1.21113 1.28175 0.97182 1.09385 0.90901 1.25029 0.95293 0.95454 0.97737 1.69911 1.32155 1.22730 1.29339 0.86774 0.77541 0.83260 0.81674 1.20290 1.21341 1.19067 1.20882 0.93861 0.97125 0.97363 1.21214 0.99972 0.92314 1.09005 0.92624 0.88255 0.92649 0.85219 0.85253 0.92436 0.90818 0.92562 0.90266 0.90324 0.90637 0.90692 0.91822 0.91771 0.96508 0.96965 0.92713 0.85621 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.89 10.50 -19.40 -0.20 -3.09 16 3 C 0.12 1.15 6.69 -39.21 -0.26 0.88 16 4 C -0.15 -1.40 9.99 -39.43 -0.39 -1.79 16 5 C -0.07 -0.66 8.75 -39.60 -0.35 -1.01 16 6 C -0.11 -1.00 4.78 -104.60 -0.50 -1.50 16 7 C -0.03 -0.28 2.56 -91.77 -0.23 -0.52 16 8 H 0.09 0.84 7.87 -51.93 -0.41 0.44 16 9 C -0.15 -1.38 8.83 37.16 0.33 -1.05 16 10 C -0.08 -0.91 5.13 37.16 0.19 -0.72 16 11 S -0.27 -3.93 20.55 -107.50 -2.21 -6.14 16 12 C -0.08 -1.28 5.94 37.16 0.22 -1.06 16 13 C -0.09 -1.75 5.16 -26.73 -0.14 -1.89 16 14 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 15 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 16 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 19 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 23 C -0.07 -0.65 9.66 -39.61 -0.38 -1.03 16 24 C -0.21 -1.75 9.04 -39.43 -0.36 -2.11 16 25 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 26 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.23 7.66 -51.93 -0.40 -0.16 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.13 1.03 7.15 -52.49 -0.38 0.65 16 30 H 0.06 0.51 7.37 -51.92 -0.38 0.13 16 31 H 0.07 0.78 7.13 -51.93 -0.37 0.41 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.84 7.58 -51.93 -0.39 0.45 16 34 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.13 0.91 7.94 -52.48 -0.42 0.49 16 43 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -31.65 361.53 -9.50 -41.15 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -7.21 Total: -2.79 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -1.43 Total: -24.43 kcal Atomic # 7 Polarization: -28.03 SS G_CDS: 0.77 Total: -27.25 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: -0.20 Total: -3.09 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -2.21 Total: -6.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.65 -9.50 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596381823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.583 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds