Wall clock time and date at job start Tue Mar 31 2020 07:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 C 1.50697 * 119.94043 * 180.27986 * 6 5 4 8 8 H 1.08998 * 109.47248 * 180.32368 * 7 6 5 9 9 C 1.52997 * 109.47464 * 300.32624 * 7 6 5 10 10 C 1.53004 * 109.47165 * 60.32604 * 7 6 5 11 11 S 1.81397 * 109.47273 * 174.99905 * 10 7 6 12 12 C 1.81399 * 102.99936 * 180.02562 * 11 10 7 13 13 C 1.53001 * 109.47097 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47168 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47582 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99476 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00568 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00217 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99674 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47117 * 90.00356 * 19 17 15 21 21 H 1.48500 * 109.46977 * 210.00406 * 19 17 15 22 22 H 1.48503 * 109.47246 * 330.00096 * 19 17 15 23 23 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 24 24 C 1.38146 * 120.05909 * 359.67357 * 23 6 5 25 25 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 26 26 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 28 28 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 30 30 H 1.09009 * 109.47314 * 60.00045 * 9 7 6 31 31 H 1.09000 * 109.47122 * 179.97438 * 9 7 6 32 32 H 1.08999 * 109.47351 * 300.00005 * 9 7 6 33 33 H 1.08996 * 109.46942 * 295.00098 * 10 7 6 34 34 H 1.09005 * 109.46989 * 55.00064 * 10 7 6 35 35 H 1.09002 * 109.46757 * 299.99803 * 12 11 10 36 36 H 1.08994 * 109.47363 * 59.99823 * 12 11 10 37 37 H 1.09002 * 109.46985 * 299.99454 * 13 12 11 38 38 H 1.08994 * 109.47331 * 59.99593 * 13 12 11 39 39 H 1.09003 * 109.47442 * 299.99344 * 14 13 12 40 40 H 1.09001 * 109.47622 * 59.99687 * 14 13 12 41 41 H 0.97000 * 120.00308 * 179.97438 * 18 17 15 42 42 H 1.08006 * 119.97147 * 179.69567 * 23 6 5 43 43 H 1.07993 * 120.03340 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 6 3.9862 5.0184 -0.0018 8 1 3.2356 5.8087 -0.0013 9 6 4.8612 5.1453 1.2468 10 6 4.8596 5.1453 -1.2516 11 16 5.5663 6.8142 -1.3285 12 6 6.5513 6.7705 -2.8512 13 6 7.2247 8.1280 -3.0621 14 6 8.0560 8.0909 -4.3460 15 6 8.7188 9.4283 -4.5542 16 1 8.5624 10.2251 -3.8422 17 6 9.5249 9.6346 -5.6536 18 7 10.1028 10.8018 -5.8355 19 14 9.7960 8.2561 -6.8847 20 1 8.7571 8.3267 -7.9436 21 1 11.1401 8.3989 -7.4997 22 1 9.7062 6.9468 -6.1897 23 6 1.9212 3.6047 -0.0004 24 6 1.2916 2.3751 0.0001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 4.0209 0.3797 -0.0005 29 1 5.1346 2.5748 0.0090 30 1 5.6120 4.3550 1.2463 31 1 5.3565 6.1163 1.2462 32 1 4.2391 5.0549 2.1372 33 1 5.6644 4.4116 -1.2085 34 1 4.2522 4.9668 -2.1390 35 1 7.3139 5.9960 -2.7684 36 1 5.9013 6.5513 -3.6982 37 1 6.4624 8.9028 -3.1447 38 1 7.8747 8.3467 -2.2150 39 1 8.8184 7.3163 -4.2631 40 1 7.4063 7.8720 -5.1934 41 1 10.6702 10.9468 -6.6088 42 1 1.3343 4.5114 -0.0003 43 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596381823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:30 Heat of formation + Delta-G solvation = -58.697932 kcal Electronic energy + Delta-G solvation = -19920.976794 eV Core-core repulsion = 16862.998230 eV Total energy + Delta-G solvation = -3057.978564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15562 -39.06354 -36.39733 -35.76672 -34.15421 -32.09262 -30.17398 -29.94010 -28.28385 -28.09379 -25.07625 -23.89241 -23.61430 -22.01710 -20.95744 -19.12361 -18.94796 -17.44916 -16.92077 -16.75164 -16.63612 -16.33268 -16.21134 -15.64338 -15.37175 -14.98986 -14.61077 -14.49328 -14.27936 -14.20510 -13.87947 -13.80373 -13.51630 -13.26380 -12.95903 -12.87808 -12.68445 -12.44339 -12.09251 -12.06152 -11.83950 -11.79295 -11.60911 -11.56243 -11.39427 -11.29006 -10.79351 -10.77053 -9.95749 -9.06093 -8.59287 -8.29657 -6.34727 0.37259 0.39047 0.77695 1.36347 1.38562 1.50463 1.72122 2.36205 2.38806 2.76659 3.05347 3.68896 3.84279 3.92958 4.00697 4.02864 4.04804 4.07380 4.28446 4.38497 4.41416 4.43650 4.51305 4.56380 4.66839 4.69018 4.74862 4.76879 4.78995 4.85356 4.99436 5.01068 5.06926 5.16390 5.27910 5.37717 5.43100 5.44575 5.52574 5.64009 5.70276 5.81195 6.27023 6.44749 6.72969 7.29654 8.87273 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028062 B = 0.002267 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.549533 B =12349.644787 C =12933.180778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.076 4.076 6 C -0.115 4.115 7 C -0.022 4.022 8 H 0.085 0.915 9 C -0.144 4.144 10 C -0.068 4.068 11 S -0.292 6.292 12 C -0.072 4.072 13 C -0.079 4.079 14 C -0.005 4.005 15 C -0.536 4.536 16 H 0.029 0.971 17 C 0.001 3.999 18 N -0.952 5.952 19 Si 0.955 3.045 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.243 1.243 23 C -0.080 4.080 24 C -0.209 4.209 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.064 0.936 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.025 0.975 40 H 0.023 0.977 41 H 0.267 0.733 42 H 0.140 0.860 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.896 -24.215 13.987 34.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.182 4.182 5 C -0.094 4.094 6 C -0.117 4.117 7 C -0.041 4.041 8 H 0.103 0.897 9 C -0.201 4.201 10 C -0.216 4.216 11 S -0.064 6.064 12 C -0.220 4.220 13 C -0.117 4.117 14 C -0.044 4.044 15 C -0.574 4.574 16 H 0.047 0.953 17 C -0.195 4.195 18 N -0.592 5.592 19 Si 0.778 3.222 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.167 1.167 23 C -0.098 4.098 24 C -0.227 4.227 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.083 0.917 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.158 0.842 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.850 -23.475 14.596 34.624 hybrid contribution 0.406 -0.662 -1.522 1.708 sum -20.444 -24.137 13.074 34.227 Atomic orbital electron populations 1.23320 0.76577 1.05479 1.02187 1.86040 1.23380 1.27055 1.88756 1.19271 0.92740 0.84695 0.96902 1.20622 0.91763 0.99102 1.06724 1.20982 1.00570 0.90779 0.97110 1.19721 0.93719 0.94356 1.03911 1.19743 0.96717 0.94319 0.93347 0.89696 1.21891 0.99426 1.02486 0.96305 1.23518 1.01720 0.94412 1.01932 1.86928 1.63154 1.21516 1.34786 1.23379 1.00659 1.01453 0.96514 1.21035 0.98090 0.94363 0.98256 1.19509 0.95246 0.95211 0.94465 1.21483 1.28793 0.98534 1.08614 0.95300 1.26083 0.94850 0.98440 1.00175 1.70076 1.33287 1.25392 1.30472 0.85591 0.77698 0.80191 0.78752 1.19058 1.20972 1.16653 1.21111 0.93865 0.97870 0.96919 1.21441 1.01035 0.91861 1.08412 0.91897 0.86483 0.91699 0.84653 0.84346 0.91873 0.92234 0.91789 0.89293 0.89944 0.89513 0.89661 0.93049 0.92965 0.95664 0.95861 0.92455 0.84248 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.63 10.50 -92.33 -0.97 -6.60 16 3 C 0.11 1.91 6.69 22.51 0.15 2.06 16 4 C -0.16 -2.84 9.99 22.37 0.22 -2.62 16 5 C -0.08 -1.26 8.75 22.26 0.19 -1.06 16 6 C -0.12 -1.92 4.78 -19.85 -0.09 -2.02 16 7 C -0.02 -0.38 2.56 -11.54 -0.03 -0.41 16 8 H 0.08 1.51 7.87 -2.39 -0.02 1.49 16 9 C -0.14 -2.48 8.83 71.98 0.64 -1.84 16 10 C -0.07 -1.37 5.13 71.98 0.37 -1.00 16 11 S -0.29 -8.09 20.55 -56.49 -1.16 -9.25 16 12 C -0.07 -2.22 5.94 71.98 0.43 -1.80 16 13 C -0.08 -3.15 5.16 30.59 0.16 -2.99 16 14 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 15 C -0.54 -31.58 9.66 25.60 0.25 -31.33 16 16 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 17 C 0.00 0.07 5.47 84.65 0.46 0.53 16 18 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 19 Si 0.95 44.27 27.47 68.60 1.88 46.15 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 23 C -0.08 -1.23 9.66 22.25 0.22 -1.01 16 24 C -0.21 -3.13 9.04 22.37 0.20 -2.93 16 25 H 0.06 0.43 7.66 -2.39 -0.02 0.41 16 26 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.06 0.41 7.66 -2.39 -0.02 0.39 16 28 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 29 H 0.14 1.92 7.15 -2.91 -0.02 1.90 16 30 H 0.06 1.01 7.37 -2.38 -0.02 0.99 16 31 H 0.06 1.20 7.13 -2.39 -0.02 1.18 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.65 7.58 -2.39 -0.02 1.63 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 40 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.14 1.69 7.94 -2.91 -0.02 1.66 16 43 H 0.15 1.50 6.30 -2.91 -0.02 1.48 16 Total: -1.00 -69.10 361.53 5.35 -63.74 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.91 Total: 11.49 kcal Atomic # 6 Polarization: -49.66 SS G_CDS: 4.39 Total: -45.26 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.30 Total: -60.28 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.97 Total: -6.60 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -69.10 5.35 -63.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596381823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.044 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds