Wall clock time and date at job start Tue Mar 31 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47234 * 2 1 4 4 C 1.53001 * 109.47038 * 239.99272 * 2 1 3 5 5 C 1.50701 * 109.46841 * 60.00679 * 4 2 1 6 6 H 1.08000 * 120.00177 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99773 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99824 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00150 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47162 * 89.99592 * 9 7 5 11 11 H 1.48496 * 109.47093 * 210.00140 * 9 7 5 12 12 H 1.48501 * 109.47054 * 330.00046 * 9 7 5 13 13 C 1.53002 * 109.46920 * 119.99881 * 2 1 3 14 14 N 1.46501 * 109.47182 * 300.00115 * 13 2 1 15 15 C 1.34771 * 120.00512 * 180.02562 * 14 13 2 16 16 O 1.21523 * 119.99613 * 0.02562 * 15 14 13 17 17 C 1.48163 * 120.00320 * 179.97438 * 15 14 13 18 18 C 1.38976 * 119.66627 * 180.02562 * 17 15 14 19 19 C 1.39388 * 119.10683 * 180.02562 * 18 17 15 20 20 O 1.35757 * 120.77337 * 179.97438 * 19 18 17 21 21 C 1.38954 * 118.44339 * 359.97438 * 19 18 17 22 22 C 1.38991 * 119.24594 * 0.25187 * 21 19 18 23 23 O 1.35670 * 119.58028 * 179.72514 * 22 21 19 24 24 N 1.32026 * 120.83371 * 359.47723 * 22 21 19 25 25 H 1.08999 * 109.47156 * 300.00149 * 1 2 3 26 26 H 1.09004 * 109.46826 * 60.00281 * 1 2 3 27 27 H 1.09001 * 109.47336 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47214 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46985 * 299.99622 * 3 2 1 30 30 H 1.08998 * 109.47429 * 59.99376 * 3 2 1 31 31 H 1.09001 * 109.46971 * 180.02562 * 4 2 1 32 32 H 1.08993 * 109.47443 * 300.00038 * 4 2 1 33 33 H 0.96991 * 119.99883 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47007 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.47382 * 59.99703 * 13 2 1 36 36 H 0.97004 * 119.99973 * 359.97438 * 14 13 2 37 37 H 1.07998 * 120.44716 * 359.97438 * 18 17 15 38 38 H 0.96695 * 114.00238 * 270.02276 * 20 19 18 39 39 H 1.08002 * 120.37322 * 179.97438 * 21 19 18 40 40 H 0.96696 * 114.00515 * 90.00296 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3807 7 6 1.8713 -0.4819 -3.7319 8 7 1.4326 0.1378 -4.8058 9 14 2.9462 -1.9999 -3.9032 10 1 2.0885 -3.2113 -3.9486 11 1 3.7382 -1.9069 -5.1559 12 1 3.8666 -2.0884 -2.7411 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6696 16 8 2.5769 -1.4782 3.7811 17 6 1.3840 0.2081 4.8793 18 6 1.7248 -0.2720 6.1381 19 6 1.2537 0.3942 7.2683 20 8 1.5654 -0.0458 8.5142 21 6 0.4577 1.5190 7.0897 22 6 0.1541 1.9382 5.7998 23 8 -0.6272 3.0323 5.6176 24 7 0.6204 1.2881 4.7496 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 3.1300 -0.7218 -1.2489 32 1 1.6767 -1.7490 -1.2491 33 1 1.6669 -0.1937 -5.6867 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2494 36 1 0.9942 0.7583 2.3564 37 1 2.3456 -1.1499 6.2394 38 1 0.9348 -0.6838 8.8752 39 1 0.0755 2.0587 7.9436 40 1 -0.1346 3.8626 5.5622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597660716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:47 Heat of formation + Delta-G solvation = -91.367820 kcal Electronic energy + Delta-G solvation = -23237.066623 eV Core-core repulsion = 19631.378173 eV Total energy + Delta-G solvation = -3605.688451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23539 -39.52490 -38.46431 -37.36280 -36.69879 -33.75567 -32.19874 -31.60187 -30.88687 -27.87385 -26.71381 -26.52264 -24.62666 -23.63947 -22.43231 -20.90965 -19.65249 -18.44962 -18.06133 -17.74201 -16.95512 -16.62151 -16.36084 -15.81166 -15.51009 -15.30546 -15.03498 -14.23951 -13.88264 -13.75998 -13.51291 -13.41342 -13.02228 -12.70213 -12.30195 -12.25629 -12.19502 -11.47861 -11.23264 -11.09746 -10.99307 -10.62123 -10.59140 -10.47648 -10.09250 -9.95897 -9.90290 -9.73031 -9.49381 -9.46068 -8.98307 -8.85306 -8.52290 -6.02912 -4.00100 0.17121 0.52567 2.41995 2.84721 3.22420 3.32504 3.39933 3.40668 3.44361 3.54999 4.25240 4.45362 4.46766 4.49256 4.94091 4.98382 5.19281 5.29618 5.38009 5.52700 5.55963 5.66441 5.81055 6.11909 6.13153 6.17731 6.35059 6.44944 6.62566 6.67213 6.91126 6.91431 6.99284 7.04011 7.07447 7.21127 7.25055 7.37583 7.63561 7.80262 8.18910 8.54549 9.01543 9.59698 11.09886 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029585 B = 0.003151 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.206758 B = 8883.568425 C = 9628.373765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.002 4.002 5 C -0.510 4.510 6 H 0.079 0.921 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.122 3.878 14 N -0.695 5.695 15 C 0.563 3.437 16 O -0.534 6.534 17 C 0.129 3.871 18 C -0.150 4.150 19 C 0.164 3.836 20 O -0.487 6.487 21 C -0.198 4.198 22 C 0.330 3.670 23 O -0.476 6.476 24 N -0.482 5.482 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.019 0.981 32 H 0.014 0.986 33 H 0.262 0.738 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.412 0.588 37 H 0.159 0.841 38 H 0.402 0.598 39 H 0.151 0.849 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 3.269 25.727 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.063 4.063 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.097 0.903 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.001 4.001 14 N -0.346 5.346 15 C 0.346 3.654 16 O -0.411 6.411 17 C -0.009 4.009 18 C -0.172 4.172 19 C 0.111 3.889 20 O -0.298 6.298 21 C -0.220 4.220 22 C 0.149 3.851 23 O -0.284 6.284 24 N -0.205 5.205 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.250 0.750 37 H 0.177 0.823 38 H 0.261 0.739 39 H 0.169 0.831 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -1.973 2.852 24.708 24.950 hybrid contribution 0.377 -0.597 0.634 0.949 sum -1.595 2.255 25.343 25.493 Atomic orbital electron populations 1.21792 0.94671 1.01291 1.01017 1.20698 0.95964 0.95977 0.93691 1.21783 1.00394 0.95556 1.00978 1.19594 0.96291 0.95496 0.92570 1.21084 1.31774 1.13372 0.88590 0.90349 1.25001 0.95721 0.96752 0.95979 1.69902 1.45964 1.40592 0.97876 0.86855 0.81334 0.83919 0.77640 1.20384 1.21534 1.18976 1.21783 0.99137 0.96201 0.82952 1.46064 1.51654 1.31781 1.05054 1.17765 0.80909 0.83895 0.82861 1.90802 1.38150 1.25782 1.86405 1.20889 0.94610 0.91620 0.93829 1.22482 1.01582 1.01999 0.91118 1.18425 0.93026 0.92482 0.84996 1.84773 1.53191 1.64443 1.27434 1.22580 1.00353 1.00319 0.98726 1.18813 0.89613 0.89801 0.86864 1.84806 1.33210 1.15681 1.94678 1.67118 1.09646 1.08105 1.35646 0.94767 0.90794 0.93408 0.93406 0.90792 0.94813 0.96323 0.96770 0.92807 0.91370 0.91379 0.75039 0.82301 0.73931 0.83082 0.73606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.05 37.16 0.30 -2.03 16 2 C -0.06 -1.17 0.54 -154.51 -0.08 -1.25 16 3 C -0.13 -2.30 8.05 37.15 0.30 -2.00 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.68 8.20 -34.44 -0.28 -13.97 16 6 H 0.08 2.23 5.92 -52.49 -0.31 1.92 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 C 0.12 2.06 4.56 -4.04 -0.02 2.04 16 14 N -0.69 -10.45 4.95 -61.15 -0.30 -10.76 16 15 C 0.56 8.54 7.81 -12.19 -0.10 8.44 16 16 O -0.53 -9.44 16.31 5.35 0.09 -9.35 16 17 C 0.13 1.62 6.74 -83.06 -0.56 1.06 16 18 C -0.15 -1.58 9.59 -38.88 -0.37 -1.95 16 19 C 0.16 1.36 6.77 -38.89 -0.26 1.10 16 20 O -0.49 -3.13 13.54 -18.98 -0.26 -3.39 16 21 C -0.20 -1.54 10.00 -39.04 -0.39 -1.93 16 22 C 0.33 3.19 7.74 -17.19 -0.13 3.05 16 23 O -0.48 -3.82 13.56 -18.71 -0.25 -4.08 16 24 N -0.48 -5.78 9.56 -9.95 -0.10 -5.87 16 25 H 0.03 0.52 6.86 -51.93 -0.36 0.17 16 26 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 30 H 0.03 0.51 6.86 -51.93 -0.36 0.15 16 31 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 32 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.41 5.84 5.49 -40.82 -0.22 5.61 16 37 H 0.16 1.63 7.63 -52.49 -0.40 1.23 16 38 H 0.40 0.56 9.06 45.56 0.41 0.98 16 39 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.41 1.26 9.06 45.56 0.41 1.67 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -34.00 334.56 -5.02 -39.01 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.56 Total: 4.85 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.79 Total: -5.77 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.38 Total: -43.15 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.42 Total: -16.81 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.00 -5.02 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597660716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.355 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds