Wall clock time and date at job start Tue Mar 31 2020 06:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47234 * 2 1 4 4 C 1.53001 * 109.47038 * 239.99272 * 2 1 3 5 5 C 1.50701 * 109.46841 * 60.00679 * 4 2 1 6 6 H 1.08000 * 120.00177 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99773 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99824 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00150 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47162 * 89.99592 * 9 7 5 11 11 H 1.48496 * 109.47093 * 210.00140 * 9 7 5 12 12 H 1.48501 * 109.47054 * 330.00046 * 9 7 5 13 13 C 1.53002 * 109.46920 * 119.99881 * 2 1 3 14 14 N 1.46501 * 109.47182 * 300.00115 * 13 2 1 15 15 C 1.34771 * 120.00512 * 180.02562 * 14 13 2 16 16 O 1.21523 * 119.99613 * 0.02562 * 15 14 13 17 17 C 1.48163 * 120.00320 * 179.97438 * 15 14 13 18 18 C 1.38976 * 119.66627 * 180.02562 * 17 15 14 19 19 C 1.39388 * 119.10683 * 180.02562 * 18 17 15 20 20 O 1.35757 * 120.77337 * 179.97438 * 19 18 17 21 21 C 1.38954 * 118.44339 * 359.97438 * 19 18 17 22 22 C 1.38991 * 119.24594 * 0.25187 * 21 19 18 23 23 O 1.35670 * 119.58028 * 179.72514 * 22 21 19 24 24 N 1.32026 * 120.83371 * 359.47723 * 22 21 19 25 25 H 1.08999 * 109.47156 * 300.00149 * 1 2 3 26 26 H 1.09004 * 109.46826 * 60.00281 * 1 2 3 27 27 H 1.09001 * 109.47336 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47214 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46985 * 299.99622 * 3 2 1 30 30 H 1.08998 * 109.47429 * 59.99376 * 3 2 1 31 31 H 1.09001 * 109.46971 * 180.02562 * 4 2 1 32 32 H 1.08993 * 109.47443 * 300.00038 * 4 2 1 33 33 H 0.96991 * 119.99883 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47007 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.47382 * 59.99703 * 13 2 1 36 36 H 0.97004 * 119.99973 * 359.97438 * 14 13 2 37 37 H 1.07998 * 120.44716 * 359.97438 * 18 17 15 38 38 H 0.96695 * 114.00238 * 270.02276 * 20 19 18 39 39 H 1.08002 * 120.37322 * 179.97438 * 21 19 18 40 40 H 0.96696 * 114.00515 * 90.00296 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3807 7 6 1.8713 -0.4819 -3.7319 8 7 1.4326 0.1378 -4.8058 9 14 2.9462 -1.9999 -3.9032 10 1 2.0885 -3.2113 -3.9486 11 1 3.7382 -1.9069 -5.1559 12 1 3.8666 -2.0884 -2.7411 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6696 16 8 2.5769 -1.4782 3.7811 17 6 1.3840 0.2081 4.8793 18 6 1.7248 -0.2720 6.1381 19 6 1.2537 0.3942 7.2683 20 8 1.5654 -0.0458 8.5142 21 6 0.4577 1.5190 7.0897 22 6 0.1541 1.9382 5.7998 23 8 -0.6272 3.0323 5.6176 24 7 0.6204 1.2881 4.7496 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 3.1300 -0.7218 -1.2489 32 1 1.6767 -1.7490 -1.2491 33 1 1.6669 -0.1937 -5.6867 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2494 36 1 0.9942 0.7583 2.3564 37 1 2.3456 -1.1499 6.2394 38 1 0.9348 -0.6838 8.8752 39 1 0.0755 2.0587 7.9436 40 1 -0.1346 3.8626 5.5622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597660716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:46 Heat of formation + Delta-G solvation = -121.313379 kcal Electronic energy + Delta-G solvation = -23238.365160 eV Core-core repulsion = 19631.378173 eV Total energy + Delta-G solvation = -3606.986988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.02426 -40.64352 -39.02471 -38.76439 -37.45394 -35.28154 -34.04384 -32.38705 -31.66291 -29.75442 -28.00890 -27.98968 -25.73277 -24.36075 -24.09745 -21.96759 -20.58996 -19.62752 -19.01789 -18.88593 -18.45475 -17.57878 -17.11658 -16.88474 -16.66130 -16.21956 -16.05863 -15.82344 -15.29771 -15.23878 -14.94190 -14.21978 -14.18855 -14.12617 -14.03741 -13.63070 -12.93383 -12.86676 -12.82275 -12.63133 -12.30618 -12.17668 -12.06869 -11.78713 -11.63702 -11.52336 -11.21455 -10.93481 -10.79502 -10.69475 -10.62378 -10.30797 -10.04604 -8.21290 -6.21651 -0.60163 -0.13623 1.37475 1.39913 1.49876 1.50193 1.91044 2.39678 2.40378 2.56993 2.89885 3.14157 3.38830 3.77526 3.80234 3.88603 4.03816 4.14790 4.26465 4.33325 4.51586 4.62842 4.68976 4.74285 4.88530 4.93303 4.99992 5.08292 5.20067 5.28103 5.31646 5.40255 5.41441 5.54423 5.66921 5.76182 6.27166 6.39286 6.52728 6.61573 6.71214 6.85279 7.04127 7.40997 8.94473 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029585 B = 0.003151 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.206758 B = 8883.568425 C = 9628.373765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.058 4.058 3 C -0.124 4.124 4 C -0.002 4.002 5 C -0.503 4.503 6 H 0.051 0.949 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.936 3.064 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.250 1.250 13 C 0.133 3.867 14 N -0.691 5.691 15 C 0.563 3.437 16 O -0.565 6.565 17 C 0.109 3.891 18 C -0.154 4.154 19 C 0.176 3.824 20 O -0.489 6.489 21 C -0.180 4.180 22 C 0.327 3.673 23 O -0.483 6.483 24 N -0.504 5.504 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.262 0.738 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.417 0.583 37 H 0.156 0.844 38 H 0.426 0.574 39 H 0.181 0.819 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 3.194 28.894 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.059 4.059 3 C -0.181 4.181 4 C -0.040 4.040 5 C -0.541 4.541 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.761 3.239 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.173 1.173 13 C 0.010 3.990 14 N -0.342 5.342 15 C 0.348 3.652 16 O -0.445 6.445 17 C -0.028 4.028 18 C -0.176 4.176 19 C 0.123 3.877 20 O -0.304 6.304 21 C -0.202 4.202 22 C 0.145 3.855 23 O -0.294 6.294 24 N -0.228 5.228 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.255 0.745 37 H 0.173 0.827 38 H 0.288 0.712 39 H 0.199 0.801 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -1.941 2.790 27.913 28.119 hybrid contribution 0.280 -0.458 -0.207 0.575 sum -1.662 2.333 27.706 27.853 Atomic orbital electron populations 1.21706 0.94130 1.01308 1.01010 1.20563 0.96351 0.96140 0.92822 1.21698 1.00371 0.94989 1.01050 1.19558 0.96121 0.95531 0.92788 1.21370 1.30244 1.12312 0.90143 0.93118 1.25849 0.97471 0.99983 0.95822 1.70046 1.48178 1.42738 0.98452 0.85870 0.79844 0.80246 0.77965 1.19686 1.21548 1.17320 1.21470 0.98823 0.95858 0.82859 1.45917 1.51807 1.31826 1.04657 1.18144 0.80102 0.83472 0.83446 1.90774 1.39540 1.27191 1.86945 1.20420 0.96531 0.92720 0.93120 1.22514 1.01723 1.02139 0.91250 1.18340 0.92105 0.92172 0.85072 1.84734 1.54313 1.65215 1.26183 1.22806 0.98926 0.99557 0.98870 1.19004 0.89334 0.90061 0.87068 1.84772 1.33616 1.16343 1.94628 1.66994 1.10342 1.08324 1.37128 0.92060 0.93439 0.93381 0.93356 0.93440 0.91955 0.96363 0.96558 0.92868 0.91719 0.91707 0.74461 0.82656 0.71170 0.80139 0.71235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.05 71.98 0.58 -3.81 16 2 C -0.06 -2.14 0.54 -52.18 -0.03 -2.16 16 3 C -0.12 -4.33 8.05 71.98 0.58 -3.75 16 4 C 0.00 -0.10 3.11 29.85 0.09 0.00 16 5 C -0.50 -27.51 8.20 25.60 0.21 -27.30 16 6 H 0.05 3.00 5.92 -2.91 -0.02 2.99 16 7 C 0.00 0.28 5.47 84.65 0.46 0.74 16 8 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 9 Si 0.94 44.46 27.47 68.60 1.88 46.34 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.25 -11.12 6.54 99.48 0.65 -10.46 16 13 C 0.13 4.38 4.56 86.38 0.39 4.77 16 14 N -0.69 -20.01 4.95 -465.66 -2.30 -22.31 16 15 C 0.56 16.67 7.81 86.88 0.68 17.35 16 16 O -0.57 -19.79 16.31 -3.79 -0.06 -19.85 16 17 C 0.11 2.62 6.74 41.80 0.28 2.90 16 18 C -0.15 -2.99 9.59 22.72 0.22 -2.77 16 19 C 0.18 2.42 6.77 22.72 0.15 2.57 16 20 O -0.49 -4.59 13.54 -90.83 -1.23 -5.82 16 21 C -0.18 -2.16 10.00 22.62 0.23 -1.94 16 22 C 0.33 5.43 7.74 84.84 0.66 6.09 16 23 O -0.48 -6.38 13.56 -89.86 -1.22 -7.60 16 24 N -0.50 -11.18 9.56 -298.37 -2.85 -14.03 16 25 H 0.06 1.80 6.86 -2.39 -0.02 1.79 16 26 H 0.05 1.92 6.62 -2.38 -0.02 1.90 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.90 6.62 -2.38 -0.02 1.89 16 30 H 0.06 1.80 6.86 -2.39 -0.02 1.78 16 31 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 32 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 33 H 0.26 15.39 8.31 -92.72 -0.77 14.62 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.42 11.16 5.49 -92.70 -0.51 10.65 16 37 H 0.16 3.04 7.63 -2.91 -0.02 3.02 16 38 H 0.43 -0.38 9.06 -74.06 -0.67 -1.05 16 39 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.43 1.43 9.06 -74.06 -0.67 0.76 16 Total: -1.00 -74.36 334.56 -1.78 -76.13 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -0.80 Total: 13.28 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.51 Total: -7.30 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -4.86 Total: -95.18 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -2.51 Total: -33.27 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -74.36 -1.78 -76.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597660716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.180 kcal (2) G-P(sol) polarization free energy of solvation -74.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds