Wall clock time and date at job start Tue Mar 31 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46752 * 2 1 4 4 C 1.50694 * 109.46871 * 240.00060 * 2 1 3 5 5 H 1.07999 * 119.99771 * 241.34455 * 4 2 1 6 6 C 1.37882 * 120.00213 * 61.35082 * 4 2 1 7 7 N 1.31512 * 119.99810 * 193.97564 * 6 4 2 8 8 Si 1.86799 * 119.99792 * 13.96894 * 6 4 2 9 9 H 1.48498 * 109.46918 * 84.55464 * 8 6 4 10 10 H 1.48497 * 109.46976 * 204.55117 * 8 6 4 11 11 H 1.48496 * 109.47215 * 324.55562 * 8 6 4 12 12 C 1.53004 * 109.47049 * 119.99813 * 2 1 3 13 13 N 1.46500 * 109.47347 * 300.00332 * 12 2 1 14 14 C 1.34774 * 120.00109 * 179.97438 * 13 12 2 15 15 O 1.21496 * 119.99690 * 0.02562 * 14 13 12 16 16 C 1.48324 * 120.00284 * 179.97438 * 14 13 12 17 17 N 1.31605 * 127.15431 * 359.97438 * 16 14 13 18 18 O 1.21559 * 111.54835 * 180.02562 * 17 16 14 19 19 C 1.32815 * 111.51819 * 359.94412 * 18 17 16 20 20 C 1.35716 * 106.70260 * 0.09549 * 19 18 17 21 21 C 1.50029 * 123.86332 * 179.88972 * 20 19 18 22 22 O 1.43614 * 107.83163 * 345.31777 * 21 20 19 23 23 C 1.42991 * 114.38976 * 49.99705 * 22 21 20 24 24 C 1.50467 * 130.85844 * 180.22367 * 19 18 17 25 25 H 1.09000 * 109.47293 * 309.36612 * 1 2 3 26 26 H 1.08994 * 109.47098 * 69.36788 * 1 2 3 27 27 H 1.09001 * 109.46909 * 189.36547 * 1 2 3 28 28 H 1.09002 * 109.46769 * 179.97438 * 3 2 1 29 29 H 1.08991 * 109.47450 * 300.00104 * 3 2 1 30 30 H 1.08999 * 109.47219 * 60.00469 * 3 2 1 31 31 H 0.97002 * 119.99557 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47173 * 179.97438 * 12 2 1 33 33 H 1.09003 * 109.46902 * 60.00068 * 12 2 1 34 34 H 0.96998 * 119.99695 * 359.97438 * 13 12 2 35 35 H 1.09007 * 109.78943 * 225.73325 * 21 20 19 36 36 H 1.08999 * 109.83912 * 104.93505 * 21 20 19 37 37 H 1.09003 * 109.39872 * 49.71012 * 23 22 21 38 38 H 1.08995 * 109.40465 * 169.54058 * 23 22 21 39 39 H 1.08996 * 109.72718 * 44.38568 * 24 19 18 40 40 H 1.09005 * 109.82458 * 283.51686 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6351 -1.6010 -1.1315 6 6 1.7223 -0.2233 -2.4826 7 7 1.9158 -0.9725 -3.5459 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4817 -2.7083 10 1 0.2469 1.5866 -3.9287 11 1 0.1418 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4455 14 6 1.8768 -0.4914 3.6696 15 8 2.5754 -1.4792 3.7810 16 6 1.3828 0.2081 4.8807 17 7 0.6246 1.2828 4.9241 18 8 0.3890 1.6170 6.0689 19 6 0.9644 0.7995 6.9433 20 6 1.6280 -0.1390 6.2216 21 6 2.4194 -1.2578 6.8322 22 8 2.6237 -0.9461 8.2191 23 6 1.4348 -0.5770 8.9227 24 6 0.9557 0.8035 8.4479 25 1 -0.3634 0.6518 0.7945 26 1 -0.3633 0.3621 -0.9617 27 1 -0.3633 -1.0140 0.1672 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6980 -0.6297 -4.4268 32 1 3.1300 -0.7216 1.2491 33 1 1.6767 -1.7489 1.2493 34 1 0.9943 0.7582 2.3564 35 1 3.3819 -1.3468 6.3283 36 1 1.8678 -2.1935 6.7415 37 1 0.6566 -1.3158 8.7311 38 1 1.6435 -0.5398 9.9918 39 1 -0.0558 0.9883 8.8095 40 1 1.6288 1.5762 8.8194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598937521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:28 Heat of formation + Delta-G solvation = -25.888024 kcal Electronic energy + Delta-G solvation = -23897.162968 eV Core-core repulsion = 20294.313935 eV Total energy + Delta-G solvation = -3602.849034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.34541 -40.97694 -39.88871 -38.53651 -35.40440 -35.06558 -34.24944 -33.48324 -31.63984 -28.42260 -28.08980 -27.49657 -27.04361 -25.25206 -24.74845 -22.32125 -21.19103 -21.03646 -19.16441 -19.00470 -18.28559 -17.98427 -17.26597 -17.02877 -16.77000 -16.52465 -16.48885 -15.88957 -15.39341 -15.05311 -14.81287 -14.61803 -14.59609 -14.36216 -14.09681 -13.82728 -13.79999 -13.09146 -12.83569 -12.73798 -12.44794 -12.25633 -12.04722 -12.02122 -11.84830 -11.56734 -11.54225 -11.11739 -10.92121 -10.66473 -10.47138 -10.29462 -10.23292 -8.33965 -6.35799 -0.11385 0.41835 1.33606 1.34769 1.47118 1.65234 1.87787 1.90942 2.30903 2.60127 2.83552 3.01772 3.40927 3.52730 3.69779 3.93033 4.01805 4.15887 4.22248 4.23340 4.32000 4.35297 4.44478 4.65072 4.68428 4.72916 4.77118 4.81037 4.84567 4.91049 4.96951 5.00201 5.02966 5.23838 5.41144 5.63301 5.70535 6.01265 6.20207 6.29200 6.67511 6.79091 6.90864 7.29153 8.82926 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036074 B = 0.003452 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.989957 B = 8110.015033 C = 8646.942457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.518 4.518 5 H 0.034 0.966 6 C 0.021 3.979 7 N -0.942 5.942 8 Si 0.941 3.059 9 H -0.281 1.281 10 H -0.312 1.312 11 H -0.210 1.210 12 C 0.154 3.846 13 N -0.696 5.696 14 C 0.590 3.410 15 O -0.553 6.553 16 C -0.020 4.020 17 N -0.349 5.349 18 O 0.144 5.856 19 C -0.012 4.012 20 C -0.221 4.221 21 C 0.146 3.854 22 O -0.388 6.388 23 C 0.050 3.950 24 C -0.065 4.065 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.266 0.734 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.411 0.589 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 6.853 28.423 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.556 4.556 5 H 0.052 0.948 6 C -0.177 4.177 7 N -0.581 5.581 8 Si 0.771 3.229 9 H -0.208 1.208 10 H -0.241 1.241 11 H -0.134 1.134 12 C 0.032 3.968 13 N -0.347 5.347 14 C 0.374 3.626 15 O -0.430 6.430 16 C -0.177 4.177 17 N -0.051 5.051 18 O 0.070 5.930 19 C -0.077 4.077 20 C -0.227 4.227 21 C 0.069 3.931 22 O -0.307 6.307 23 C -0.026 4.026 24 C -0.103 4.103 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.249 0.751 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.366 6.844 27.367 28.716 hybrid contribution 0.002 0.137 -1.173 1.181 sum -5.364 6.981 26.194 27.634 Atomic orbital electron populations 1.22233 0.96244 1.00646 1.00796 1.18658 0.93694 0.93020 0.91938 1.22312 1.01217 0.96981 1.00031 1.20964 1.33156 1.11277 0.90218 0.94753 1.25791 0.95284 1.01348 0.95248 1.70094 1.50452 1.38161 0.99423 0.86372 0.79440 0.80238 0.76897 1.20808 1.24143 1.13443 1.21258 0.98071 0.95312 0.82207 1.46009 1.52023 1.31761 1.04920 1.17132 0.80127 0.83287 0.82062 1.90761 1.39043 1.26634 1.86579 1.22757 1.02642 0.96666 0.95642 1.74673 1.16226 1.14137 1.00021 1.84621 1.54309 1.43861 1.10164 1.24745 0.95378 0.90215 0.97398 1.21571 1.06337 1.03839 0.90977 1.20819 0.99523 0.92133 0.80666 1.88118 1.33652 1.88366 1.20551 1.23137 0.87399 0.93284 0.98773 1.21358 1.07172 1.01494 0.80253 0.92492 0.93279 0.93693 0.93057 0.94399 0.91745 0.92532 0.92679 0.92797 0.75137 0.87815 0.90084 0.91383 0.83605 0.84182 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 7.53 71.98 0.54 -5.10 16 2 C 0.03 1.22 0.50 -52.93 -0.03 1.20 16 3 C -0.15 -5.85 7.52 71.98 0.54 -5.31 16 4 C -0.52 -28.67 8.62 25.60 0.22 -28.45 16 5 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 6 C 0.02 1.21 5.32 84.66 0.45 1.66 16 7 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 8 Si 0.94 43.33 22.79 68.60 1.56 44.89 16 9 H -0.28 -12.68 7.10 99.48 0.71 -11.97 16 10 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 11 H -0.21 -8.38 4.65 99.48 0.46 -7.91 16 12 C 0.15 6.30 4.49 86.38 0.39 6.69 16 13 N -0.70 -24.00 5.00 -465.51 -2.33 -26.33 16 14 C 0.59 20.53 7.85 86.93 0.68 21.21 16 15 O -0.55 -21.99 16.29 -3.70 -0.06 -22.05 16 16 C -0.02 -0.59 7.18 42.46 0.30 -0.29 16 17 N -0.35 -9.31 11.90 -48.98 -0.58 -9.89 16 18 O 0.14 3.03 11.17 81.71 0.91 3.95 16 19 C -0.01 -0.21 7.49 25.03 0.19 -0.02 16 20 C -0.22 -5.26 6.15 -20.07 -0.12 -5.38 16 21 C 0.15 3.16 6.67 71.03 0.47 3.63 16 22 O -0.39 -6.79 10.76 -148.98 -1.60 -8.39 16 23 C 0.05 0.40 6.78 72.20 0.49 0.89 16 24 C -0.07 -0.44 6.54 29.99 0.20 -0.24 16 25 H 0.06 1.87 7.13 -2.39 -0.02 1.85 16 26 H 0.05 2.04 4.30 -2.39 -0.01 2.03 16 27 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.54 2.25 -2.39 -0.01 1.53 16 30 H 0.06 2.09 6.86 -2.39 -0.02 2.07 16 31 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.41 12.79 6.03 -92.71 -0.56 12.23 16 35 H 0.10 2.58 8.00 -2.38 -0.02 2.56 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 0.48 8.10 -2.39 -0.02 0.46 16 38 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -71.72 317.45 2.81 -68.91 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.28 Total: 16.54 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.33 Total: -9.51 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -2.61 Total: -94.34 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.75 Total: -26.50 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.56 Total: 44.89 kcal Total: -71.72 2.81 -68.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598937521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.026 kcal (2) G-P(sol) polarization free energy of solvation -71.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds